Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0553 and Rru_A0554 are separated by 175 nucleotides Rru_A0554 and Rru_A0555 are separated by 14 nucleotides Rru_A0555 and Rru_A0556 are separated by 219 nucleotides
Rru_A0553: Rru_A0553 - Response Regulator Receiver Signal Transduction Histidine Kinase (NCBI), at 653,714 to 655,036
_A0553
Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531
_A0554
Rru_A0555: Rru_A0555 - Nitrogen regulatory protein P-II (GlnB, GlnK) (NCBI), at 656,546 to 656,884
_A0555
Rru_A0556: Rru_A0556 - Formyltetrahydrofolate deformylase (NCBI), at 657,104 to 657,997
_A0556
Position (kb) 655
656
657 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.321 kb on + strand, within Rru_A0553 at 654.322 kb on - strand, within Rru_A0553 at 654.555 kb on + strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.621 kb on + strand, within Rru_A0553 at 654.637 kb on - strand, within Rru_A0553 at 655.084 kb on - strand at 655.179 kb on - strand at 655.213 kb on + strand at 655.687 kb on + strand, within Rru_A0554 at 655.687 kb on + strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.805 kb on + strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554 at 656.604 kb on + strand, within Rru_A0555 at 656.733 kb on + strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.734 kb on - strand, within Rru_A0555 at 656.749 kb on - strand, within Rru_A0555 at 657.229 kb on - strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.294 kb on + strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.295 kb on - strand, within Rru_A0556 at 657.346 kb on - strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.388 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556 at 657.444 kb on + strand, within Rru_A0556
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 654,319 + Rru_A0553 0.46 +0.9 654,319 + Rru_A0553 0.46 +0.6 654,319 + Rru_A0553 0.46 +0.3 654,319 + Rru_A0553 0.46 -2.6 654,319 + Rru_A0553 0.46 +2.1 654,319 + Rru_A0553 0.46 -2.1 654,319 + Rru_A0553 0.46 +0.7 654,319 + Rru_A0553 0.46 -0.7 654,320 - Rru_A0553 0.46 -0.0 654,320 - Rru_A0553 0.46 -3.7 654,320 - Rru_A0553 0.46 -0.6 654,321 + Rru_A0553 0.46 +0.3 654,322 - Rru_A0553 0.46 +0.5 654,555 + Rru_A0553 0.64 -2.1 654,556 - Rru_A0553 0.64 -1.0 654,556 - Rru_A0553 0.64 -0.1 654,556 - Rru_A0553 0.64 -0.7 654,621 + Rru_A0553 0.69 -1.2 654,637 - Rru_A0553 0.70 -0.1 655,084 - +0.3 655,179 - -0.3 655,213 + -0.9 655,687 + Rru_A0554 0.36 +0.9 655,687 + Rru_A0554 0.36 -0.5 655,688 - Rru_A0554 0.36 -0.2 655,688 - Rru_A0554 0.36 -1.9 655,688 - Rru_A0554 0.36 -0.9 655,688 - Rru_A0554 0.36 -2.9 655,805 + Rru_A0554 0.45 -2.6 655,806 - Rru_A0554 0.45 -1.5 655,806 - Rru_A0554 0.45 -2.2 656,604 + Rru_A0555 0.17 -0.6 656,733 + Rru_A0555 0.55 -0.5 656,734 - Rru_A0555 0.55 -1.2 656,734 - Rru_A0555 0.55 -0.6 656,749 - Rru_A0555 0.60 -1.1 657,229 - Rru_A0556 0.14 +0.3 657,294 + Rru_A0556 0.21 -1.6 657,294 + Rru_A0556 0.21 +0.3 657,294 + Rru_A0556 0.21 +0.5 657,295 - Rru_A0556 0.21 +0.4 657,295 - Rru_A0556 0.21 +1.8 657,346 - Rru_A0556 0.27 +0.9 657,388 + Rru_A0556 0.32 +2.0 657,388 + Rru_A0556 0.32 +0.2 657,444 + Rru_A0556 0.38 +0.3 657,444 + Rru_A0556 0.38 +0.2
Or see this region's nucleotide sequence