Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0479 and Rru_A0480 are separated by 64 nucleotides Rru_A0480 and Rru_A0481 are separated by 123 nucleotides
Rru_A0479: Rru_A0479 - Radical SAM (NCBI), at 562,192 to 563,694
_A0479
Rru_A0480: Rru_A0480 - hypothetical protein (NCBI), at 563,759 to 563,947
_A0480
Rru_A0481: Rru_A0481 - hypothetical protein (NCBI), at 564,071 to 565,939
_A0481
Position (kb) 563
564 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 562.888 kb on - strand, within Rru_A0479 at 563.098 kb on - strand, within Rru_A0479 at 563.098 kb on - strand, within Rru_A0479 at 563.205 kb on - strand, within Rru_A0479 at 563.205 kb on - strand, within Rru_A0479 at 563.210 kb on + strand, within Rru_A0479 at 563.210 kb on + strand, within Rru_A0479 at 563.210 kb on + strand, within Rru_A0479 at 563.211 kb on - strand, within Rru_A0479 at 563.211 kb on - strand, within Rru_A0479 at 563.211 kb on - strand, within Rru_A0479 at 563.247 kb on + strand, within Rru_A0479 at 563.248 kb on - strand, within Rru_A0479 at 563.577 kb on + strand at 563.578 kb on - strand at 563.578 kb on - strand at 563.584 kb on - strand at 563.591 kb on + strand at 563.592 kb on - strand at 563.649 kb on + strand at 563.710 kb on + strand at 563.731 kb on - strand at 563.950 kb on + strand at 563.950 kb on + strand at 563.951 kb on - strand at 563.951 kb on - strand at 563.951 kb on - strand at 563.951 kb on - strand at 563.964 kb on + strand at 563.965 kb on - strand at 564.050 kb on - strand at 564.083 kb on - strand at 564.167 kb on + strand at 564.168 kb on - strand at 564.186 kb on + strand at 564.298 kb on + strand, within Rru_A0481 at 564.298 kb on + strand, within Rru_A0481 at 564.299 kb on - strand, within Rru_A0481 at 564.301 kb on - strand, within Rru_A0481 at 564.301 kb on - strand, within Rru_A0481 at 564.489 kb on + strand, within Rru_A0481 at 564.489 kb on + strand, within Rru_A0481 at 564.489 kb on + strand, within Rru_A0481 at 564.489 kb on + strand, within Rru_A0481 at 564.489 kb on + strand, within Rru_A0481 at 564.490 kb on - strand, within Rru_A0481 at 564.490 kb on - strand, within Rru_A0481 at 564.490 kb on - strand, within Rru_A0481 at 564.531 kb on + strand, within Rru_A0481 at 564.531 kb on + strand, within Rru_A0481 at 564.531 kb on + strand, within Rru_A0481 at 564.532 kb on - strand, within Rru_A0481 at 564.532 kb on - strand, within Rru_A0481 at 564.532 kb on - strand, within Rru_A0481 at 564.552 kb on + strand, within Rru_A0481 at 564.674 kb on - strand, within Rru_A0481 at 564.674 kb on - strand, within Rru_A0481 at 564.732 kb on + strand, within Rru_A0481 at 564.732 kb on + strand, within Rru_A0481 at 564.777 kb on + strand, within Rru_A0481 at 564.778 kb on - strand, within Rru_A0481 at 564.778 kb on - strand, within Rru_A0481 at 564.778 kb on - strand, within Rru_A0481 at 564.783 kb on + strand, within Rru_A0481 at 564.828 kb on + strand, within Rru_A0481 at 564.829 kb on - strand, within Rru_A0481
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 562,888 - Rru_A0479 0.46 +0.0 563,098 - Rru_A0479 0.60 +0.1 563,098 - Rru_A0479 0.60 +0.0 563,205 - Rru_A0479 0.67 -1.1 563,205 - Rru_A0479 0.67 +3.0 563,210 + Rru_A0479 0.68 -0.3 563,210 + Rru_A0479 0.68 -2.5 563,210 + Rru_A0479 0.68 -0.3 563,211 - Rru_A0479 0.68 -0.1 563,211 - Rru_A0479 0.68 -0.2 563,211 - Rru_A0479 0.68 +0.6 563,247 + Rru_A0479 0.70 +1.4 563,248 - Rru_A0479 0.70 +0.7 563,577 + -1.1 563,578 - +0.6 563,578 - +2.1 563,584 - -0.1 563,591 + -0.5 563,592 - +0.7 563,649 + -0.4 563,710 + -0.1 563,731 - +0.4 563,950 + +0.0 563,950 + -0.5 563,951 - -1.0 563,951 - +0.9 563,951 - -0.2 563,951 - +0.6 563,964 + +0.2 563,965 - +1.3 564,050 - -0.3 564,083 - -0.2 564,167 + -1.1 564,168 - +0.5 564,186 + -3.6 564,298 + Rru_A0481 0.12 -1.4 564,298 + Rru_A0481 0.12 -0.7 564,299 - Rru_A0481 0.12 -0.0 564,301 - Rru_A0481 0.12 -3.3 564,301 - Rru_A0481 0.12 +0.8 564,489 + Rru_A0481 0.22 +0.9 564,489 + Rru_A0481 0.22 -0.6 564,489 + Rru_A0481 0.22 +0.2 564,489 + Rru_A0481 0.22 -1.3 564,489 + Rru_A0481 0.22 +0.5 564,490 - Rru_A0481 0.22 -0.4 564,490 - Rru_A0481 0.22 +0.0 564,490 - Rru_A0481 0.22 +1.8 564,531 + Rru_A0481 0.25 -0.4 564,531 + Rru_A0481 0.25 +0.5 564,531 + Rru_A0481 0.25 +0.7 564,532 - Rru_A0481 0.25 +0.3 564,532 - Rru_A0481 0.25 -0.6 564,532 - Rru_A0481 0.25 +0.2 564,552 + Rru_A0481 0.26 -0.1 564,674 - Rru_A0481 0.32 +0.1 564,674 - Rru_A0481 0.32 -0.1 564,732 + Rru_A0481 0.35 +0.4 564,732 + Rru_A0481 0.35 -0.5 564,777 + Rru_A0481 0.38 -1.6 564,778 - Rru_A0481 0.38 -0.9 564,778 - Rru_A0481 0.38 +1.6 564,778 - Rru_A0481 0.38 +0.4 564,783 + Rru_A0481 0.38 -0.4 564,828 + Rru_A0481 0.41 -2.0 564,829 - Rru_A0481 0.41 -0.0
Or see this region's nucleotide sequence