Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0438

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0437 and Rru_A0438 are separated by 264 nucleotidesRru_A0438 and Rru_A0439 are separated by 212 nucleotides Rru_A0437: Rru_A0437 - OmpA family protein (NCBI), at 512,107 to 513,129 _A0437 Rru_A0438: Rru_A0438 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 513,394 to 516,138 _A0438 Rru_A0439: Rru_A0439 - extracellular solute-binding protein, family 3 (NCBI), at 516,351 to 517,445 _A0439 Position (kb) 513 514 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 513.041 kb on + strandat 513.146 kb on - strandat 513.146 kb on - strandat 513.246 kb on + strandat 513.247 kb on - strandat 513.255 kb on - strandat 513.255 kb on - strandat 513.280 kb on - strandat 513.395 kb on + strandat 513.395 kb on + strandat 513.395 kb on + strandat 513.510 kb on + strandat 513.540 kb on + strandat 513.541 kb on - strandat 513.541 kb on - strandat 513.541 kb on - strandat 513.542 kb on + strandat 513.543 kb on - strandat 513.543 kb on - strandat 513.549 kb on + strandat 513.550 kb on - strandat 513.550 kb on - strandat 513.754 kb on - strand, within Rru_A0438at 513.785 kb on + strand, within Rru_A0438at 513.786 kb on - strand, within Rru_A0438at 513.786 kb on - strand, within Rru_A0438at 513.786 kb on - strand, within Rru_A0438at 513.786 kb on - strand, within Rru_A0438at 513.881 kb on + strand, within Rru_A0438at 513.881 kb on + strand, within Rru_A0438at 513.882 kb on - strand, within Rru_A0438at 513.882 kb on - strand, within Rru_A0438at 513.882 kb on - strand, within Rru_A0438at 514.378 kb on + strand, within Rru_A0438at 514.378 kb on + strand, within Rru_A0438at 514.378 kb on + strand, within Rru_A0438at 514.378 kb on + strand, within Rru_A0438at 514.379 kb on - strand, within Rru_A0438at 514.379 kb on - strand, within Rru_A0438at 514.379 kb on - strand, within Rru_A0438at 514.379 kb on - strand, within Rru_A0438at 514.379 kb on - strand, within Rru_A0438at 514.379 kb on - strand, within Rru_A0438at 514.385 kb on + strand, within Rru_A0438at 514.385 kb on + strand, within Rru_A0438at 514.385 kb on + strand, within Rru_A0438at 514.385 kb on + strand, within Rru_A0438at 514.386 kb on - strand, within Rru_A0438at 514.386 kb on - strand, within Rru_A0438at 514.386 kb on - strand, within Rru_A0438at 514.386 kb on - strand, within Rru_A0438at 514.436 kb on + strand, within Rru_A0438at 514.436 kb on + strand, within Rru_A0438at 514.436 kb on + strand, within Rru_A0438at 514.436 kb on + strand, within Rru_A0438at 514.436 kb on + strand, within Rru_A0438at 514.437 kb on - strand, within Rru_A0438at 514.973 kb on + strand, within Rru_A0438at 514.973 kb on + strand, within Rru_A0438at 514.974 kb on - strand, within Rru_A0438at 515.303 kb on + strand, within Rru_A0438at 515.330 kb on + strand, within Rru_A0438at 515.330 kb on + strand, within Rru_A0438at 515.331 kb on - strand, within Rru_A0438at 515.331 kb on - strand, within Rru_A0438at 515.853 kb on + strand, within Rru_A0438at 515.854 kb on - strand, within Rru_A0438at 516.214 kb on + strandat 516.214 kb on + strandat 516.214 kb on + strandat 516.214 kb on + strandat 516.215 kb on - strandat 516.215 kb on - strandat 516.306 kb on - strandat 516.306 kb on - strandat 516.306 kb on - strandat 516.497 kb on + strand, within Rru_A0439at 516.497 kb on + strand, within Rru_A0439at 516.498 kb on - strand, within Rru_A0439at 516.519 kb on + strand, within Rru_A0439at 516.933 kb on - strand, within Rru_A0439at 516.933 kb on - strand, within Rru_A0439at 516.935 kb on - strand, within Rru_A0439at 517.000 kb on - strand, within Rru_A0439at 517.000 kb on - strand, within Rru_A0439at 517.000 kb on - strand, within Rru_A0439at 517.000 kb on - strand, within Rru_A0439

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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513,041 + +2.4
513,146 - -0.4
513,146 - +0.1
513,246 + +2.4
513,247 - +0.2
513,255 - -3.1
513,255 - +0.2
513,280 - -2.2
513,395 + -1.5
513,395 + +0.9
513,395 + -0.2
513,510 + -1.7
513,540 + -0.8
513,541 - -0.6
513,541 - -0.3
513,541 - -0.9
513,542 + +0.4
513,543 - -1.3
513,543 - -1.1
513,549 + -0.0
513,550 - -1.3
513,550 - +0.4
513,754 - Rru_A0438 0.13 -0.5
513,785 + Rru_A0438 0.14 +0.3
513,786 - Rru_A0438 0.14 +0.6
513,786 - Rru_A0438 0.14 -0.8
513,786 - Rru_A0438 0.14 -0.2
513,786 - Rru_A0438 0.14 +0.3
513,881 + Rru_A0438 0.18 -2.2
513,881 + Rru_A0438 0.18 -0.3
513,882 - Rru_A0438 0.18 -1.2
513,882 - Rru_A0438 0.18 -0.3
513,882 - Rru_A0438 0.18 -2.0
514,378 + Rru_A0438 0.36 -0.6
514,378 + Rru_A0438 0.36 -0.9
514,378 + Rru_A0438 0.36 +0.2
514,378 + Rru_A0438 0.36 +0.5
514,379 - Rru_A0438 0.36 -1.2
514,379 - Rru_A0438 0.36 -0.5
514,379 - Rru_A0438 0.36 +0.1
514,379 - Rru_A0438 0.36 +0.6
514,379 - Rru_A0438 0.36 -2.0
514,379 - Rru_A0438 0.36 +0.5
514,385 + Rru_A0438 0.36 +1.2
514,385 + Rru_A0438 0.36 -2.8
514,385 + Rru_A0438 0.36 +0.1
514,385 + Rru_A0438 0.36 -0.9
514,386 - Rru_A0438 0.36 +0.3
514,386 - Rru_A0438 0.36 -0.5
514,386 - Rru_A0438 0.36 -0.3
514,386 - Rru_A0438 0.36 -0.2
514,436 + Rru_A0438 0.38 -0.1
514,436 + Rru_A0438 0.38 -2.0
514,436 + Rru_A0438 0.38 -0.2
514,436 + Rru_A0438 0.38 -2.1
514,436 + Rru_A0438 0.38 -3.2
514,437 - Rru_A0438 0.38 -1.4
514,973 + Rru_A0438 0.58 +0.9
514,973 + Rru_A0438 0.58 -0.4
514,974 - Rru_A0438 0.58 -0.3
515,303 + Rru_A0438 0.70 -0.7
515,330 + Rru_A0438 0.71 -0.6
515,330 + Rru_A0438 0.71 +0.5
515,331 - Rru_A0438 0.71 -0.2
515,331 - Rru_A0438 0.71 -2.1
515,853 + Rru_A0438 0.90 -0.6
515,854 - Rru_A0438 0.90 -0.2
516,214 + +0.7
516,214 + -0.8
516,214 + +0.4
516,214 + -2.4
516,215 - -1.2
516,215 - -1.6
516,306 - -1.4
516,306 - -1.0
516,306 - -0.4
516,497 + Rru_A0439 0.13 -1.0
516,497 + Rru_A0439 0.13 -0.8
516,498 - Rru_A0439 0.13 +0.6
516,519 + Rru_A0439 0.15 -0.1
516,933 - Rru_A0439 0.53 -0.4
516,933 - Rru_A0439 0.53 +0.0
516,935 - Rru_A0439 0.53 +0.0
517,000 - Rru_A0439 0.59 -0.5
517,000 - Rru_A0439 0.59 +0.3
517,000 - Rru_A0439 0.59 -1.3
517,000 - Rru_A0439 0.59 +0.3

Or see this region's nucleotide sequence