Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0371

Experiment: Hexanoic 21 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0369 and Rru_A0370 are separated by 5 nucleotidesRru_A0370 and Rru_A0371 overlap by 4 nucleotidesRru_A0371 and Rru_A0372 are separated by 52 nucleotides Rru_A0369: Rru_A0369 - ATPase associated with various cellular activities, AAA_3 (NCBI), at 443,155 to 444,165 _A0369 Rru_A0370: Rru_A0370 - Protein of unknown function DUF58 (NCBI), at 444,171 to 445,109 _A0370 Rru_A0371: Rru_A0371 - Double-transmembrane region-like (NCBI), at 445,106 to 447,889 _A0371 Rru_A0372: Rru_A0372 - hypothetical protein (NCBI), at 447,942 to 450,014 _A0372 Position (kb) 445 446 447 448Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 444.435 kb on + strand, within Rru_A0370at 444.495 kb on + strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 444.496 kb on - strand, within Rru_A0370at 445.123 kb on + strandat 445.123 kb on + strandat 445.139 kb on + strandat 445.139 kb on + strandat 445.139 kb on + strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.140 kb on - strandat 445.276 kb on + strandat 445.277 kb on - strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.349 kb on + strandat 445.350 kb on - strandat 445.351 kb on + strandat 445.459 kb on - strand, within Rru_A0371at 445.459 kb on - strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.119 kb on + strand, within Rru_A0371at 446.120 kb on - strand, within Rru_A0371at 446.195 kb on + strand, within Rru_A0371at 446.196 kb on - strand, within Rru_A0371at 446.196 kb on - strand, within Rru_A0371at 446.196 kb on - strand, within Rru_A0371at 446.891 kb on + strand, within Rru_A0371at 446.892 kb on - strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.254 kb on + strand, within Rru_A0371at 447.255 kb on - strand, within Rru_A0371at 447.255 kb on - strand, within Rru_A0371at 447.408 kb on - strand, within Rru_A0371at 447.408 kb on - strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.470 kb on + strand, within Rru_A0371at 447.471 kb on - strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.472 kb on + strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.473 kb on - strand, within Rru_A0371at 447.599 kb on + strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.600 kb on - strand, within Rru_A0371at 447.744 kb on - strandat 447.744 kb on - strandat 447.791 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.818 kb on + strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.819 kb on - strandat 447.836 kb on + strandat 447.836 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.887 kb on + strandat 447.888 kb on - strandat 447.888 kb on - strandat 447.953 kb on + strandat 447.954 kb on - strandat 447.959 kb on + strandat 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.444 kb on + strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.445 kb on - strand, within Rru_A0372at 448.854 kb on - strand, within Rru_A0372

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic
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444,435 + Rru_A0370 0.28 -0.8
444,495 + Rru_A0370 0.35 +0.2
444,496 - Rru_A0370 0.35 +1.0
444,496 - Rru_A0370 0.35 -1.4
444,496 - Rru_A0370 0.35 -0.6
445,123 + -2.5
445,123 + -0.9
445,139 + -2.6
445,139 + -3.2
445,139 + -0.3
445,140 - +1.4
445,140 - -0.7
445,140 - +1.4
445,140 - +0.4
445,276 + +0.2
445,277 - +2.1
445,349 + +2.4
445,349 + +1.0
445,349 + -2.1
445,349 + -0.4
445,350 - +0.1
445,351 + +1.4
445,459 - Rru_A0371 0.13 -1.1
445,459 - Rru_A0371 0.13 -1.3
446,119 + Rru_A0371 0.36 +1.6
446,119 + Rru_A0371 0.36 -2.0
446,119 + Rru_A0371 0.36 +1.4
446,119 + Rru_A0371 0.36 -1.4
446,119 + Rru_A0371 0.36 +0.4
446,119 + Rru_A0371 0.36 -0.4
446,120 - Rru_A0371 0.36 -1.9
446,195 + Rru_A0371 0.39 -3.3
446,196 - Rru_A0371 0.39 +3.3
446,196 - Rru_A0371 0.39 +1.3
446,196 - Rru_A0371 0.39 -1.8
446,891 + Rru_A0371 0.64 -2.2
446,892 - Rru_A0371 0.64 +0.4
447,254 + Rru_A0371 0.77 +1.0
447,254 + Rru_A0371 0.77 +2.1
447,254 + Rru_A0371 0.77 +0.7
447,255 - Rru_A0371 0.77 +0.8
447,255 - Rru_A0371 0.77 +1.8
447,408 - Rru_A0371 0.83 +0.3
447,408 - Rru_A0371 0.83 -2.2
447,470 + Rru_A0371 0.85 +1.4
447,470 + Rru_A0371 0.85 +0.1
447,470 + Rru_A0371 0.85 +3.1
447,470 + Rru_A0371 0.85 +0.1
447,470 + Rru_A0371 0.85 -2.1
447,471 - Rru_A0371 0.85 +1.5
447,472 + Rru_A0371 0.85 -1.2
447,472 + Rru_A0371 0.85 -2.5
447,472 + Rru_A0371 0.85 +2.3
447,472 + Rru_A0371 0.85 +3.7
447,473 - Rru_A0371 0.85 +2.4
447,473 - Rru_A0371 0.85 -1.5
447,473 - Rru_A0371 0.85 +0.4
447,473 - Rru_A0371 0.85 -2.2
447,473 - Rru_A0371 0.85 -1.1
447,599 + Rru_A0371 0.90 +0.2
447,600 - Rru_A0371 0.90 -0.5
447,600 - Rru_A0371 0.90 -1.5
447,600 - Rru_A0371 0.90 -0.5
447,600 - Rru_A0371 0.90 +1.1
447,744 - -0.6
447,744 - +0.4
447,791 + -1.0
447,818 + -3.0
447,818 + -2.8
447,818 + +0.8
447,818 + -0.2
447,818 + -2.1
447,819 - -0.7
447,819 - +1.4
447,819 - -1.8
447,819 - -0.8
447,819 - -1.4
447,836 + +2.4
447,836 + +1.8
447,887 + +0.2
447,887 + +0.8
447,887 + -0.4
447,887 + +1.6
447,887 + +0.5
447,888 - -0.4
447,888 - -0.9
447,953 + -1.6
447,954 - +0.5
447,959 + +0.3
448,444 + Rru_A0372 0.24 +0.7
448,444 + Rru_A0372 0.24 +1.4
448,444 + Rru_A0372 0.24 +0.3
448,444 + Rru_A0372 0.24 +0.4
448,444 + Rru_A0372 0.24 +2.4
448,444 + Rru_A0372 0.24 -0.5
448,444 + Rru_A0372 0.24 +0.2
448,444 + Rru_A0372 0.24 +0.4
448,445 - Rru_A0372 0.24 -2.2
448,445 - Rru_A0372 0.24 -2.6
448,445 - Rru_A0372 0.24 -4.5
448,854 - Rru_A0372 0.44 -1.4

Or see this region's nucleotide sequence