Experiment: Hexanoic 21 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0366 and Rru_A0367 are separated by 192 nucleotides Rru_A0367 and Rru_A0368 are separated by 32 nucleotides Rru_A0368 and Rru_A0369 are separated by 27 nucleotides
Rru_A0366: Rru_A0366 - Polynucleotide adenylyltransferase region (NCBI), at 439,994 to 441,571
_A0366
Rru_A0367: Rru_A0367 - NUDIX hydrolase (NCBI), at 441,764 to 442,495
_A0367
Rru_A0368: Rru_A0368 - Protein of unknown function DUF1285 (NCBI), at 442,528 to 443,127
_A0368
Rru_A0369: Rru_A0369 - ATPase associated with various cellular activities, AAA_3 (NCBI), at 443,155 to 444,165
_A0369
Position (kb) 441
442
443 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 441.446 kb on - strand at 441.536 kb on + strand at 441.536 kb on + strand at 441.536 kb on + strand at 441.538 kb on + strand at 441.538 kb on + strand at 441.538 kb on + strand at 441.538 kb on + strand at 441.538 kb on + strand at 441.538 kb on + strand at 441.539 kb on - strand at 441.539 kb on - strand at 441.539 kb on - strand at 441.571 kb on + strand at 441.571 kb on + strand at 441.572 kb on - strand at 441.572 kb on - strand at 441.572 kb on - strand at 441.579 kb on + strand at 441.579 kb on + strand at 441.579 kb on + strand at 441.580 kb on - strand at 441.580 kb on - strand at 441.580 kb on - strand at 441.580 kb on - strand at 441.580 kb on - strand at 441.844 kb on + strand, within Rru_A0367 at 441.844 kb on + strand, within Rru_A0367 at 441.844 kb on + strand, within Rru_A0367 at 441.844 kb on + strand, within Rru_A0367 at 441.845 kb on - strand, within Rru_A0367 at 441.845 kb on - strand, within Rru_A0367 at 441.845 kb on - strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.846 kb on + strand, within Rru_A0367 at 441.847 kb on - strand, within Rru_A0367 at 441.847 kb on - strand, within Rru_A0367 at 441.847 kb on - strand, within Rru_A0367 at 441.847 kb on - strand, within Rru_A0367 at 441.870 kb on + strand, within Rru_A0367 at 441.870 kb on + strand, within Rru_A0367 at 441.870 kb on + strand, within Rru_A0367 at 441.870 kb on + strand, within Rru_A0367 at 441.871 kb on - strand, within Rru_A0367 at 441.871 kb on - strand, within Rru_A0367 at 442.050 kb on + strand, within Rru_A0367 at 442.050 kb on + strand, within Rru_A0367 at 442.051 kb on - strand, within Rru_A0367 at 442.051 kb on - strand, within Rru_A0367 at 442.051 kb on - strand, within Rru_A0367 at 442.092 kb on - strand, within Rru_A0367 at 442.388 kb on + strand, within Rru_A0367 at 442.389 kb on - strand, within Rru_A0367 at 442.529 kb on + strand at 442.529 kb on + strand at 443.193 kb on - strand at 443.193 kb on - strand at 443.426 kb on + strand, within Rru_A0369 at 443.427 kb on - strand, within Rru_A0369
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic 21 mM; anaerobic remove 441,446 - +2.1 441,536 + +1.1 441,536 + -0.7 441,536 + -0.1 441,538 + -0.3 441,538 + -2.5 441,538 + -0.7 441,538 + -0.3 441,538 + -0.0 441,538 + -0.8 441,539 - +0.6 441,539 - -1.8 441,539 - +1.2 441,571 + -0.1 441,571 + -0.8 441,572 - +0.6 441,572 - -0.2 441,572 - -0.9 441,579 + -0.5 441,579 + -0.2 441,579 + -0.1 441,580 - +0.1 441,580 - +0.7 441,580 - -0.2 441,580 - +0.7 441,580 - +0.9 441,844 + Rru_A0367 0.11 -0.9 441,844 + Rru_A0367 0.11 -1.3 441,844 + Rru_A0367 0.11 -0.7 441,844 + Rru_A0367 0.11 -0.1 441,845 - Rru_A0367 0.11 +0.0 441,845 - Rru_A0367 0.11 +1.3 441,845 - Rru_A0367 0.11 -2.2 441,846 + Rru_A0367 0.11 -3.8 441,846 + Rru_A0367 0.11 -0.9 441,846 + Rru_A0367 0.11 -0.9 441,846 + Rru_A0367 0.11 -1.1 441,846 + Rru_A0367 0.11 -1.0 441,846 + Rru_A0367 0.11 -1.7 441,846 + Rru_A0367 0.11 -1.3 441,846 + Rru_A0367 0.11 -0.9 441,847 - Rru_A0367 0.11 -1.7 441,847 - Rru_A0367 0.11 -2.5 441,847 - Rru_A0367 0.11 -0.7 441,847 - Rru_A0367 0.11 -0.1 441,870 + Rru_A0367 0.14 -0.5 441,870 + Rru_A0367 0.14 -0.2 441,870 + Rru_A0367 0.14 -0.0 441,870 + Rru_A0367 0.14 -0.7 441,871 - Rru_A0367 0.15 -1.0 441,871 - Rru_A0367 0.15 +1.7 442,050 + Rru_A0367 0.39 -1.2 442,050 + Rru_A0367 0.39 +0.1 442,051 - Rru_A0367 0.39 +0.0 442,051 - Rru_A0367 0.39 -0.1 442,051 - Rru_A0367 0.39 -2.0 442,092 - Rru_A0367 0.45 +0.6 442,388 + Rru_A0367 0.85 -1.5 442,389 - Rru_A0367 0.85 +1.3 442,529 + -1.5 442,529 + +0.4 443,193 - -0.8 443,193 - +0.5 443,426 + Rru_A0369 0.27 -1.2 443,427 - Rru_A0369 0.27 +1.1
Or see this region's nucleotide sequence