Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_RNA41

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
2,808,218	-		Psyr_2427	0.44	+2.2
2,808,237	-		Psyr_2427	0.46	+2.2
2,808,269	+		Psyr_2427	0.48	-0.2
2,808,269	+		Psyr_2427	0.48	+0.8
2,808,322	+		Psyr_2427	0.52	+2.8
2,808,322	+		Psyr_2427	0.52	+1.4
2,808,323	-		Psyr_2427	0.52	-0.6
2,808,323	-		Psyr_2427	0.52	+2.4
2,808,386	+		Psyr_2427	0.57	+0.8
2,808,387	-		Psyr_2427	0.57	-1.0
2,808,421	+		Psyr_2427	0.60	-0.2
2,808,422	-		Psyr_2427	0.60	-1.8
2,808,422	-		Psyr_2427	0.60	-0.4
2,808,422	-		Psyr_2427	0.60	+2.2
2,808,422	-		Psyr_2427	0.60	+2.4
2,808,552	+		Psyr_2427	0.70	-0.2
2,808,697	+		Psyr_2427	0.82	-1.6
2,808,697	+		Psyr_2427	0.82	-2.0
2,808,904	+				-0.4
2,808,904	+				+0.8
2,808,905	-				+4.0
2,808,985	+				+2.8
2,809,305	-				+2.6
2,809,325	+				-4.0
2,809,325	+				-3.3
2,809,328	-				-2.7
2,809,364	-				+1.8
2,809,366	+				-0.2
2,809,367	-				+2.1
2,809,379	-				+2.8
2,809,427	+				-2.0
2,809,427	+				+0.8
2,809,428	-				-1.4
2,809,428	-				-1.0
2,809,428	-				+1.4
2,809,429	+				+2.4
2,809,429	+				+3.4
2,809,447	+				+0.8
2,809,482	-				-0.4
2,809,492	+				+3.0
2,809,493	-				+1.8
2,809,526	+				-0.4
2,809,548	-				+1.4
2,809,548	-				-1.4
2,809,548	-				+2.1
2,809,550	+				+0.5
2,809,550	+				+3.0
2,809,550	+				+3.3
2,809,551	-				-2.0
2,809,551	-				-1.9
2,809,551	-				+2.1
2,809,556	+				-0.5
2,809,556	+				-2.1
2,809,597	+				-1.3
2,809,597	+				+0.8
2,809,597	+				-2.0
2,809,598	-				-0.5
2,809,615	-				+3.0
2,809,646	+				-2.4
2,809,647	-				-0.9
2,809,647	-				-0.2
2,809,647	-				+3.7
2,809,661	-				-1.3
2,809,683	+				-1.4
2,809,684	-				+3.0
2,809,684	-				+4.0
2,809,684	-				-1.0
2,809,684	-				-1.3
2,809,689	+				+1.8
2,809,689	+				+2.8
2,809,690	-				-1.8
2,809,690	-				-0.9
2,809,699	-				+3.6
2,809,699	-				+0.8
2,809,703	-				-0.2
2,809,703	-				+0.0
2,809,777	-				+0.8
2,809,919	-		Psyr_2428	0.14	-2.0
2,810,028	+				-3.3
2,810,057	+		Psyr_2428	0.43	-4.0
2,810,058	-		Psyr_2428	0.44	+3.3
2,810,100	-		Psyr_2428	0.52	+0.5
2,810,131	+		Psyr_2428	0.59	-0.5
2,810,131	+		Psyr_2428	0.59	+1.0
2,810,150	+		Psyr_2428	0.63	-1.8
2,810,154	-		Psyr_2428	0.64	-2.0