Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5024 and Psyr_5025 are separated by 0 nucleotides Psyr_5025 and Psyr_5026 are separated by 165 nucleotides Psyr_5026 and Psyr_5027 are separated by 247 nucleotides Psyr_5027 and Psyr_5028 are separated by 192 nucleotides
Psyr_5024: Psyr_5024 - conserved hypothetical protein, at 5,964,171 to 5,966,132
_5024
Psyr_5025: Psyr_5025 - conserved hypothetical protein, at 5,966,133 to 5,966,510
_5025
Psyr_5026: Psyr_5026 - conserved hypothetical protein, at 5,966,676 to 5,967,119
_5026
Psyr_5027: Psyr_5027 - bacterial nucleoid protein HU alpha subunit, at 5,967,367 to 5,967,642
_5027
Psyr_5028: Psyr_5028 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 5,967,835 to 5,968,983
_5028
Position (kb) 5966
5967
5968 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.705 kb on + strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.706 kb on - strand, within Psyr_5024 at 5965.709 kb on + strand, within Psyr_5024 at 5965.709 kb on + strand, within Psyr_5024 at 5965.710 kb on - strand, within Psyr_5024 at 5965.791 kb on + strand, within Psyr_5024 at 5965.791 kb on + strand, within Psyr_5024 at 5965.792 kb on - strand, within Psyr_5024 at 5965.792 kb on - strand, within Psyr_5024 at 5966.161 kb on + strand at 5966.162 kb on - strand at 5966.511 kb on - strand at 5966.511 kb on - strand at 5966.560 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.718 kb on + strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.719 kb on - strand at 5966.743 kb on + strand, within Psyr_5026 at 5966.743 kb on + strand, within Psyr_5026 at 5966.743 kb on + strand, within Psyr_5026 at 5966.743 kb on + strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.744 kb on - strand, within Psyr_5026 at 5966.890 kb on + strand, within Psyr_5026 at 5966.890 kb on + strand, within Psyr_5026 at 5966.890 kb on + strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5966.891 kb on - strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.052 kb on + strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.053 kb on - strand, within Psyr_5026 at 5967.137 kb on + strand at 5967.137 kb on + strand at 5967.138 kb on - strand at 5967.138 kb on - strand at 5967.138 kb on - strand at 5967.138 kb on - strand at 5967.169 kb on - strand at 5967.169 kb on - strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.223 kb on + strand at 5967.224 kb on - strand at 5967.224 kb on - strand at 5967.224 kb on - strand at 5967.224 kb on - strand at 5967.279 kb on + strand at 5967.279 kb on + strand at 5967.279 kb on + strand at 5967.280 kb on - strand at 5967.280 kb on - strand at 5967.508 kb on + strand, within Psyr_5027 at 5967.547 kb on - strand, within Psyr_5027 at 5967.642 kb on + strand at 5967.642 kb on + strand at 5967.642 kb on + strand at 5967.643 kb on - strand at 5967.643 kb on - strand at 5967.643 kb on - strand at 5967.657 kb on - strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.672 kb on + strand at 5967.673 kb on - strand at 5967.725 kb on + strand at 5967.726 kb on - strand at 5967.726 kb on - strand at 5967.726 kb on - strand at 5967.804 kb on + strand at 5967.804 kb on + strand at 5967.805 kb on - strand at 5968.055 kb on + strand, within Psyr_5028 at 5968.056 kb on - strand, within Psyr_5028
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,965,705 + Psyr_5024 0.78 -0.2 5,965,705 + Psyr_5024 0.78 +0.9 5,965,705 + Psyr_5024 0.78 +0.7 5,965,705 + Psyr_5024 0.78 -0.7 5,965,705 + Psyr_5024 0.78 +0.3 5,965,705 + Psyr_5024 0.78 +1.7 5,965,705 + Psyr_5024 0.78 -1.6 5,965,705 + Psyr_5024 0.78 -2.5 5,965,706 - Psyr_5024 0.78 +0.3 5,965,706 - Psyr_5024 0.78 +1.9 5,965,706 - Psyr_5024 0.78 -3.9 5,965,706 - Psyr_5024 0.78 +1.3 5,965,706 - Psyr_5024 0.78 +2.1 5,965,706 - Psyr_5024 0.78 -0.4 5,965,706 - Psyr_5024 0.78 -1.2 5,965,706 - Psyr_5024 0.78 -1.3 5,965,709 + Psyr_5024 0.78 +1.9 5,965,709 + Psyr_5024 0.78 -0.7 5,965,710 - Psyr_5024 0.78 +0.3 5,965,791 + Psyr_5024 0.83 -0.5 5,965,791 + Psyr_5024 0.83 +4.1 5,965,792 - Psyr_5024 0.83 +4.2 5,965,792 - Psyr_5024 0.83 +3.3 5,966,161 + +2.9 5,966,162 - -0.6 5,966,511 - -1.3 5,966,511 - -0.6 5,966,560 + -1.6 5,966,718 + -2.9 5,966,718 + -0.7 5,966,718 + -1.4 5,966,718 + +0.3 5,966,718 + -2.2 5,966,718 + +0.5 5,966,718 + +0.2 5,966,718 + +3.9 5,966,719 - -2.4 5,966,719 - +2.3 5,966,719 - +0.5 5,966,719 - -2.1 5,966,719 - -0.8 5,966,719 - -1.3 5,966,719 - -2.1 5,966,719 - +0.5 5,966,743 + Psyr_5026 0.15 -2.7 5,966,743 + Psyr_5026 0.15 +4.7 5,966,743 + Psyr_5026 0.15 -3.2 5,966,743 + Psyr_5026 0.15 -0.2 5,966,744 - Psyr_5026 0.15 -2.1 5,966,744 - Psyr_5026 0.15 +4.1 5,966,744 - Psyr_5026 0.15 +4.6 5,966,744 - Psyr_5026 0.15 -1.3 5,966,744 - Psyr_5026 0.15 +3.9 5,966,890 + Psyr_5026 0.48 +3.3 5,966,890 + Psyr_5026 0.48 +4.0 5,966,890 + Psyr_5026 0.48 -0.2 5,966,891 - Psyr_5026 0.48 +2.6 5,966,891 - Psyr_5026 0.48 -1.5 5,966,891 - Psyr_5026 0.48 -0.0 5,966,891 - Psyr_5026 0.48 +2.9 5,966,891 - Psyr_5026 0.48 +4.5 5,966,891 - Psyr_5026 0.48 +4.0 5,966,891 - Psyr_5026 0.48 +3.3 5,967,052 + Psyr_5026 0.85 +2.0 5,967,052 + Psyr_5026 0.85 +3.6 5,967,052 + Psyr_5026 0.85 -0.8 5,967,052 + Psyr_5026 0.85 -0.5 5,967,053 - Psyr_5026 0.85 +0.9 5,967,053 - Psyr_5026 0.85 +2.3 5,967,053 - Psyr_5026 0.85 +3.5 5,967,053 - Psyr_5026 0.85 -0.4 5,967,053 - Psyr_5026 0.85 -2.6 5,967,053 - Psyr_5026 0.85 -1.3 5,967,053 - Psyr_5026 0.85 +2.6 5,967,137 + -0.1 5,967,137 + -1.2 5,967,138 - +2.3 5,967,138 - -2.8 5,967,138 - -2.2 5,967,138 - -0.3 5,967,169 - -2.1 5,967,169 - +3.6 5,967,223 + +1.7 5,967,223 + -2.9 5,967,223 + +2.3 5,967,223 + -0.7 5,967,223 + -1.3 5,967,223 + +3.9 5,967,224 - -1.6 5,967,224 - -2.9 5,967,224 - +2.9 5,967,224 - -4.7 5,967,279 + +3.3 5,967,279 + -2.0 5,967,279 + +0.3 5,967,280 - -3.0 5,967,280 - -1.3 5,967,508 + Psyr_5027 0.51 +4.2 5,967,547 - Psyr_5027 0.65 -1.7 5,967,642 + -0.0 5,967,642 + -2.5 5,967,642 + -2.4 5,967,643 - -1.4 5,967,643 - -1.5 5,967,643 - -1.0 5,967,657 - -1.2 5,967,672 + +1.3 5,967,672 + +0.4 5,967,672 + -0.4 5,967,672 + +3.5 5,967,672 + -0.5 5,967,673 - -0.0 5,967,725 + +1.9 5,967,726 - -0.3 5,967,726 - +0.6 5,967,726 - -0.1 5,967,804 + -0.2 5,967,804 + +3.6 5,967,805 - -1.2 5,968,055 + Psyr_5028 0.19 -0.2 5,968,056 - Psyr_5028 0.19 +3.7
Or see this region's nucleotide sequence