Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4990 and Psyr_4991 are separated by 7 nucleotides Psyr_4991 and Psyr_4992 are separated by 439 nucleotides
Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003
_4990
Psyr_4991: Psyr_4991 - hypothetical protein, at 5,921,011 to 5,921,331
_4991
Psyr_4992: Psyr_4992 - YD repeat protein, at 5,921,771 to 5,923,126
_4992
Position (kb) 5921
5922 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5920.019 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.039 kb on - strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.097 kb on + strand, within Psyr_4990 at 5920.107 kb on + strand, within Psyr_4990 at 5920.107 kb on + strand, within Psyr_4990 at 5920.113 kb on + strand, within Psyr_4990 at 5920.113 kb on + strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.237 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.239 kb on - strand, within Psyr_4990 at 5920.243 kb on - strand, within Psyr_4990 at 5920.243 kb on - strand, within Psyr_4990 at 5920.243 kb on - strand, within Psyr_4990 at 5920.243 kb on - strand, within Psyr_4990 at 5920.258 kb on - strand, within Psyr_4990 at 5920.258 kb on - strand, within Psyr_4990 at 5920.258 kb on - strand, within Psyr_4990 at 5920.312 kb on - strand, within Psyr_4990 at 5920.312 kb on - strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.444 kb on + strand, within Psyr_4990 at 5920.445 kb on - strand, within Psyr_4990 at 5920.489 kb on - strand, within Psyr_4990 at 5920.494 kb on - strand, within Psyr_4990 at 5920.494 kb on - strand, within Psyr_4990 at 5920.532 kb on + strand, within Psyr_4990 at 5920.565 kb on + strand, within Psyr_4990 at 5920.578 kb on + strand, within Psyr_4990 at 5920.579 kb on - strand, within Psyr_4990 at 5920.589 kb on + strand, within Psyr_4990 at 5920.627 kb on + strand, within Psyr_4990 at 5920.628 kb on - strand, within Psyr_4990 at 5920.655 kb on + strand, within Psyr_4990 at 5920.656 kb on - strand, within Psyr_4990 at 5920.681 kb on + strand, within Psyr_4990 at 5920.681 kb on + strand, within Psyr_4990 at 5920.801 kb on + strand at 5920.802 kb on - strand at 5920.802 kb on - strand at 5920.844 kb on + strand at 5920.895 kb on + strand at 5920.896 kb on - strand at 5920.922 kb on + strand at 5920.922 kb on + strand at 5920.923 kb on - strand at 5920.923 kb on - strand at 5921.048 kb on + strand, within Psyr_4991 at 5921.075 kb on - strand, within Psyr_4991 at 5921.123 kb on + strand, within Psyr_4991 at 5921.128 kb on - strand, within Psyr_4991 at 5921.158 kb on + strand, within Psyr_4991 at 5921.159 kb on - strand, within Psyr_4991 at 5921.226 kb on - strand, within Psyr_4991 at 5921.250 kb on - strand, within Psyr_4991 at 5921.365 kb on + strand at 5921.365 kb on + strand at 5921.463 kb on + strand at 5921.463 kb on + strand at 5921.472 kb on + strand at 5921.479 kb on - strand at 5921.486 kb on + strand at 5921.500 kb on - strand at 5921.504 kb on + strand at 5921.504 kb on + strand at 5921.505 kb on - strand at 5921.505 kb on - strand at 5921.561 kb on - strand at 5921.578 kb on + strand at 5921.579 kb on - strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.667 kb on + strand at 5921.668 kb on - strand at 5921.705 kb on - strand at 5921.717 kb on + strand at 5921.717 kb on + strand at 5921.718 kb on - strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.743 kb on + strand at 5921.744 kb on - strand at 5921.799 kb on - strand at 5921.799 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.814 kb on - strand at 5921.841 kb on - strand at 5922.203 kb on + strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992 at 5922.329 kb on - strand, within Psyr_4992
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,920,019 - Psyr_4990 0.62 -0.1 5,920,039 - Psyr_4990 0.63 -1.2 5,920,039 - Psyr_4990 0.63 +0.1 5,920,039 - Psyr_4990 0.63 +1.0 5,920,097 + Psyr_4990 0.65 -2.5 5,920,097 + Psyr_4990 0.65 -1.2 5,920,107 + Psyr_4990 0.66 -0.4 5,920,107 + Psyr_4990 0.66 -0.6 5,920,113 + Psyr_4990 0.66 -0.5 5,920,113 + Psyr_4990 0.66 -1.1 5,920,237 - Psyr_4990 0.71 -0.8 5,920,237 - Psyr_4990 0.71 +5.0 5,920,237 - Psyr_4990 0.71 +4.2 5,920,237 - Psyr_4990 0.71 -0.3 5,920,237 - Psyr_4990 0.71 +0.9 5,920,237 - Psyr_4990 0.71 +0.6 5,920,237 - Psyr_4990 0.71 +1.9 5,920,237 - Psyr_4990 0.71 +2.3 5,920,237 - Psyr_4990 0.71 +3.7 5,920,237 - Psyr_4990 0.71 +0.3 5,920,237 - Psyr_4990 0.71 +0.7 5,920,237 - Psyr_4990 0.71 -0.3 5,920,237 - Psyr_4990 0.71 +0.6 5,920,239 - Psyr_4990 0.71 +2.6 5,920,239 - Psyr_4990 0.71 +0.3 5,920,239 - Psyr_4990 0.71 -0.6 5,920,239 - Psyr_4990 0.71 +4.2 5,920,243 - Psyr_4990 0.71 -0.2 5,920,243 - Psyr_4990 0.71 -1.1 5,920,243 - Psyr_4990 0.71 +0.3 5,920,243 - Psyr_4990 0.71 +0.9 5,920,258 - Psyr_4990 0.71 +2.7 5,920,258 - Psyr_4990 0.71 -0.4 5,920,258 - Psyr_4990 0.71 -2.7 5,920,312 - Psyr_4990 0.73 +0.5 5,920,312 - Psyr_4990 0.73 -1.3 5,920,444 + Psyr_4990 0.78 +2.3 5,920,444 + Psyr_4990 0.78 -0.1 5,920,445 - Psyr_4990 0.79 -1.1 5,920,489 - Psyr_4990 0.80 +0.1 5,920,494 - Psyr_4990 0.80 +0.6 5,920,494 - Psyr_4990 0.80 -0.1 5,920,532 + Psyr_4990 0.82 -0.0 5,920,565 + Psyr_4990 0.83 -0.3 5,920,578 + Psyr_4990 0.84 -1.2 5,920,579 - Psyr_4990 0.84 +1.9 5,920,589 + Psyr_4990 0.84 +4.0 5,920,627 + Psyr_4990 0.86 -0.2 5,920,628 - Psyr_4990 0.86 -1.1 5,920,655 + Psyr_4990 0.87 +1.3 5,920,656 - Psyr_4990 0.87 -0.9 5,920,681 + Psyr_4990 0.88 -1.1 5,920,681 + Psyr_4990 0.88 -1.2 5,920,801 + +4.4 5,920,802 - -4.0 5,920,802 - +1.2 5,920,844 + +0.3 5,920,895 + -0.2 5,920,896 - -0.8 5,920,922 + +3.5 5,920,922 + -2.4 5,920,923 - +0.1 5,920,923 - +2.9 5,921,048 + Psyr_4991 0.12 -5.2 5,921,075 - Psyr_4991 0.20 -3.4 5,921,123 + Psyr_4991 0.35 +1.3 5,921,128 - Psyr_4991 0.36 +0.3 5,921,158 + Psyr_4991 0.46 -1.7 5,921,159 - Psyr_4991 0.46 +1.9 5,921,226 - Psyr_4991 0.67 +0.3 5,921,250 - Psyr_4991 0.74 -3.2 5,921,365 + -1.5 5,921,365 + -2.3 5,921,463 + -1.0 5,921,463 + -0.2 5,921,472 + -0.4 5,921,479 - +3.1 5,921,486 + +5.1 5,921,500 - +0.4 5,921,504 + -3.8 5,921,504 + -1.8 5,921,505 - +0.2 5,921,505 - -0.2 5,921,561 - -1.5 5,921,578 + -1.0 5,921,579 - -4.3 5,921,667 + +0.8 5,921,667 + +2.8 5,921,667 + +0.5 5,921,667 + -1.6 5,921,668 - +1.3 5,921,705 - -0.7 5,921,717 + -0.9 5,921,717 + +2.3 5,921,718 - -2.0 5,921,743 + +0.5 5,921,743 + +4.9 5,921,743 + +2.6 5,921,743 + -1.9 5,921,744 - -1.3 5,921,799 - +0.3 5,921,799 - +3.1 5,921,814 - -1.7 5,921,814 - -1.0 5,921,814 - -2.3 5,921,814 - +2.6 5,921,814 - -1.2 5,921,814 - +0.3 5,921,814 - -0.9 5,921,841 - -1.6 5,922,203 + Psyr_4992 0.32 +0.3 5,922,329 - Psyr_4992 0.41 +1.1 5,922,329 - Psyr_4992 0.41 +1.3 5,922,329 - Psyr_4992 0.41 +2.6 5,922,329 - Psyr_4992 0.41 +0.9 5,922,329 - Psyr_4992 0.41 +3.1
Or see this region's nucleotide sequence