Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4967

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
5,890,713	-				+1.3
5,890,713	-		Psyr_4966	0.33	+2.8
5,890,979	-		Psyr_4966	0.58	+1.0
5,891,057	+		Psyr_4966	0.65	+2.3
5,891,057	+		Psyr_4966	0.65	+2.7
5,891,057	+		Psyr_4966	0.65	+2.8
5,891,058	-		Psyr_4966	0.65	-1.3
5,891,058	-		Psyr_4966	0.65	+0.1
5,891,058	-		Psyr_4966	0.65	-1.8
5,891,315	-		Psyr_4966	0.88	-1.0
5,891,315	-		Psyr_4966	0.88	-0.9
5,891,433	+				-0.7
5,891,434	-				-0.5
5,891,434	-				-1.9
5,891,441	-				-0.4
5,891,453	+				-2.1
5,891,466	+				-1.1
5,891,467	-				-0.6
5,891,467	-				-0.8
5,891,479	-				-1.6
5,891,520	-				-1.1
5,891,541	+				-0.2
5,891,541	+				-2.4
5,891,548	-				-0.4
5,891,559	+				+2.8
5,891,559	+				-0.7
5,891,615	-				-1.6
5,891,950	-		Psyr_4967	0.77	-3.2
5,891,959	+		Psyr_4967	0.80	-2.7
5,891,977	+		Psyr_4967	0.84	+0.3
5,891,977	+		Psyr_4967	0.84	-2.2
5,891,977	+		Psyr_4967	0.84	-0.5
5,891,978	-		Psyr_4967	0.84	+2.3
5,891,983	+		Psyr_4967	0.85	-0.6
5,891,986	+		Psyr_4967	0.86	-1.9
5,891,986	+		Psyr_4967	0.86	-1.1
5,891,987	-		Psyr_4967	0.86	-0.1
5,892,119	+				-0.4
5,892,120	-				+0.3
5,892,162	-				+0.8
5,892,165	+				-1.1
5,892,165	+				-2.3
5,892,165	+				-0.8
5,892,165	+				-0.2
5,892,166	-				+4.7
5,892,166	-				-0.1
5,892,166	-				+0.3
5,892,201	+				-1.9
5,892,201	+				-0.2
5,892,202	-				-1.3
5,892,238	+		Psyr_4968	0.12	+1.1
5,892,239	-		Psyr_4968	0.12	+4.2
5,892,303	-		Psyr_4968	0.32	+0.7
5,892,303	-		Psyr_4968	0.32	-1.4
5,892,331	+		Psyr_4968	0.40	+0.4
5,892,332	-		Psyr_4968	0.40	+1.1
5,892,336	+		Psyr_4968	0.41	-1.5
5,892,336	+		Psyr_4968	0.41	+3.6
5,892,336	+		Psyr_4968	0.41	+4.0
5,892,337	-		Psyr_4968	0.42	-0.6
5,892,337	-		Psyr_4968	0.42	+3.8
5,892,337	-		Psyr_4968	0.42	+0.3
5,892,337	-		Psyr_4968	0.42	-1.1
5,892,341	-		Psyr_4968	0.43	+0.3
5,892,376	-		Psyr_4968	0.53	-2.4
5,892,420	+		Psyr_4968	0.67	+2.1
5,892,420	+		Psyr_4968	0.67	+2.8
5,892,420	+		Psyr_4968	0.67	+0.2
5,892,421	-		Psyr_4968	0.67	-0.6
5,892,421	-		Psyr_4968	0.67	+3.4
5,892,421	-		Psyr_4968	0.67	-0.7
5,892,421	-		Psyr_4968	0.67	-0.4
5,892,421	-		Psyr_4968	0.67	-0.4
5,892,494	-		Psyr_4968	0.89	+1.3
5,892,522	+				+0.3
5,892,522	+				-0.1
5,892,522	+				-1.7
5,892,522	+				+1.2
5,892,522	+				+3.1
5,892,522	+				+1.5
5,892,522	+				+3.8
5,892,523	-				+2.6
5,892,523	-				+1.1
5,892,526	+				+0.6
5,892,526	+				+0.6
5,892,526	+				+2.8
5,892,527	-				+0.5
5,892,527	-				+1.1
5,892,563	-				-1.7
5,892,563	-				-4.3
5,892,563	-				-1.0
5,892,604	+		Psyr_4969	0.13	-0.9
5,892,604	+		Psyr_4969	0.13	-1.7
5,892,605	-		Psyr_4969	0.13	+3.6
5,892,605	-		Psyr_4969	0.13	-1.7
5,892,605	-		Psyr_4969	0.13	+2.9
5,892,619	-		Psyr_4969	0.17	-1.0
5,892,619	-		Psyr_4969	0.17	-0.7
5,892,648	+		Psyr_4969	0.27	-0.1
5,892,648	+		Psyr_4969	0.27	-0.8
5,892,648	+		Psyr_4969	0.27	-2.1
5,892,649	-		Psyr_4969	0.27	-0.3
5,892,649	-		Psyr_4969	0.27	+1.0
5,892,695	+		Psyr_4969	0.42	-0.7
5,892,696	-		Psyr_4969	0.42	-1.3
5,892,748	-		Psyr_4969	0.59	+0.6
5,892,871	+				-0.7
5,892,871	+				+0.3
5,892,871	+				+1.3
5,892,872	-				-1.1
5,892,888	+				+1.4
5,892,888	+				-3.1
5,892,888	+				+0.3
5,892,888	+				+2.3
5,892,888	+				+0.0
5,892,888	+				+2.6
5,892,888	+				+4.8
5,892,888	+				-0.8
5,892,888	+				+2.3
5,892,889	-				+4.0
5,892,889	-				+0.3
5,892,889	-				+1.3
5,892,889	-				+0.3
5,892,889	-				-1.3
5,892,889	-				-1.5
5,892,889	-				+1.3
5,893,031	+				-0.2
5,893,032	-				-0.4
5,893,032	-				+0.6
5,893,032	-				+5.1