Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4932 and Psyr_4933 are separated by 5 nucleotides Psyr_4933 and Psyr_4934 are separated by 341 nucleotides
Psyr_4932: Psyr_4932 - agmatine deiminase, at 5,844,785 to 5,845,891
_4932
Psyr_4933: Psyr_4933 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 5,845,897 to 5,846,775
_4933
Psyr_4934: Psyr_4934 - Aminoglycoside phosphotransferase:Aminotransferase class-III, at 5,847,117 to 5,850,029
_4934
Position (kb) 5845
5846
5847 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5845.090 kb on + strand, within Psyr_4932 at 5845.100 kb on - strand, within Psyr_4932 at 5845.139 kb on - strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.199 kb on + strand, within Psyr_4932 at 5845.200 kb on - strand, within Psyr_4932 at 5845.221 kb on + strand, within Psyr_4932 at 5845.221 kb on + strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.449 kb on + strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.475 kb on + strand, within Psyr_4932 at 5845.476 kb on - strand, within Psyr_4932 at 5845.515 kb on + strand, within Psyr_4932 at 5845.515 kb on + strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.686 kb on + strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.105 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.155 kb on - strand, within Psyr_4933 at 5846.340 kb on - strand, within Psyr_4933 at 5846.384 kb on + strand, within Psyr_4933 at 5846.385 kb on - strand, within Psyr_4933 at 5846.385 kb on - strand, within Psyr_4933 at 5846.387 kb on + strand, within Psyr_4933 at 5846.432 kb on + strand, within Psyr_4933 at 5846.433 kb on + strand, within Psyr_4933 at 5846.433 kb on - strand, within Psyr_4933 at 5846.433 kb on - strand, within Psyr_4933 at 5846.600 kb on + strand, within Psyr_4933 at 5846.628 kb on - strand, within Psyr_4933 at 5846.689 kb on + strand at 5846.690 kb on - strand at 5846.690 kb on - strand at 5846.690 kb on - strand at 5846.781 kb on + strand at 5846.781 kb on + strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.816 kb on + strand at 5846.816 kb on + strand at 5846.817 kb on - strand at 5846.817 kb on - strand at 5846.861 kb on - strand at 5846.958 kb on - strand at 5847.049 kb on - strand at 5847.067 kb on - strand at 5847.072 kb on - strand at 5847.090 kb on + strand at 5847.118 kb on + strand at 5847.118 kb on + strand at 5847.118 kb on + strand at 5847.144 kb on + strand at 5847.145 kb on - strand at 5847.217 kb on + strand at 5847.335 kb on - strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.517 kb on + strand, within Psyr_4934 at 5847.518 kb on - strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.775 kb on + strand, within Psyr_4934
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,844,981 + Psyr_4932 0.18 -0.3 5,844,981 + Psyr_4932 0.18 +2.8 5,844,981 + Psyr_4932 0.18 +2.3 5,844,981 + Psyr_4932 0.18 +0.3 5,844,981 + Psyr_4932 0.18 -2.7 5,844,981 + Psyr_4932 0.18 +3.4 5,844,982 - Psyr_4932 0.18 -2.0 5,844,982 - Psyr_4932 0.18 +0.3 5,844,982 - Psyr_4932 0.18 -0.6 5,844,982 - Psyr_4932 0.18 +1.8 5,844,982 - Psyr_4932 0.18 +0.1 5,844,982 - Psyr_4932 0.18 +0.7 5,844,982 - Psyr_4932 0.18 -0.1 5,845,090 + Psyr_4932 0.28 +0.3 5,845,100 - Psyr_4932 0.28 +1.8 5,845,139 - Psyr_4932 0.32 +0.3 5,845,164 + Psyr_4932 0.34 -3.3 5,845,164 + Psyr_4932 0.34 -0.6 5,845,164 + Psyr_4932 0.34 -2.5 5,845,165 - Psyr_4932 0.34 +0.4 5,845,165 - Psyr_4932 0.34 -0.5 5,845,165 - Psyr_4932 0.34 +0.8 5,845,165 - Psyr_4932 0.34 -1.9 5,845,199 + Psyr_4932 0.37 -1.7 5,845,200 - Psyr_4932 0.37 -2.1 5,845,221 + Psyr_4932 0.39 +1.3 5,845,221 + Psyr_4932 0.39 +3.1 5,845,222 - Psyr_4932 0.39 -1.0 5,845,222 - Psyr_4932 0.39 +1.1 5,845,222 - Psyr_4932 0.39 +0.4 5,845,222 - Psyr_4932 0.39 +2.6 5,845,449 + Psyr_4932 0.60 +3.6 5,845,450 - Psyr_4932 0.60 -1.1 5,845,450 - Psyr_4932 0.60 -2.2 5,845,450 - Psyr_4932 0.60 -2.7 5,845,475 + Psyr_4932 0.62 -3.7 5,845,476 - Psyr_4932 0.62 +0.3 5,845,515 + Psyr_4932 0.66 +2.3 5,845,515 + Psyr_4932 0.66 -2.4 5,845,516 - Psyr_4932 0.66 -2.7 5,845,516 - Psyr_4932 0.66 -0.2 5,845,516 - Psyr_4932 0.66 -1.9 5,845,686 + Psyr_4932 0.81 +3.6 5,845,687 - Psyr_4932 0.81 -1.5 5,845,687 - Psyr_4932 0.81 -4.0 5,845,687 - Psyr_4932 0.81 +0.6 5,845,687 - Psyr_4932 0.81 +0.6 5,846,090 + Psyr_4933 0.22 +0.3 5,846,090 + Psyr_4933 0.22 +1.8 5,846,090 + Psyr_4933 0.22 -2.1 5,846,090 + Psyr_4933 0.22 -2.3 5,846,091 - Psyr_4933 0.22 -2.6 5,846,091 - Psyr_4933 0.22 -2.2 5,846,091 - Psyr_4933 0.22 -2.7 5,846,105 + Psyr_4933 0.24 -1.3 5,846,154 + Psyr_4933 0.29 +0.3 5,846,154 + Psyr_4933 0.29 -0.5 5,846,154 + Psyr_4933 0.29 +1.8 5,846,155 - Psyr_4933 0.29 -3.0 5,846,340 - Psyr_4933 0.50 -1.5 5,846,384 + Psyr_4933 0.55 +1.3 5,846,385 - Psyr_4933 0.56 +0.3 5,846,385 - Psyr_4933 0.56 +0.7 5,846,387 + Psyr_4933 0.56 -0.1 5,846,432 + Psyr_4933 0.61 -1.0 5,846,433 + Psyr_4933 0.61 -1.4 5,846,433 - Psyr_4933 0.61 -1.7 5,846,433 - Psyr_4933 0.61 +2.6 5,846,600 + Psyr_4933 0.80 +3.6 5,846,628 - Psyr_4933 0.83 -3.8 5,846,689 + -3.0 5,846,690 - -3.3 5,846,690 - -2.8 5,846,690 - -0.7 5,846,781 + +3.3 5,846,781 + -1.4 5,846,809 - +0.5 5,846,809 - +1.8 5,846,809 - +3.4 5,846,809 - -0.2 5,846,816 + -5.0 5,846,816 + -5.8 5,846,817 - -2.0 5,846,817 - +0.1 5,846,861 - -1.7 5,846,958 - +1.8 5,847,049 - -0.3 5,847,067 - +0.3 5,847,072 - -0.5 5,847,090 + +1.8 5,847,118 + +1.7 5,847,118 + -3.7 5,847,118 + -2.4 5,847,144 + -1.0 5,847,145 - -2.1 5,847,217 + +0.7 5,847,335 - +4.0 5,847,372 + +4.4 5,847,372 + +2.0 5,847,372 + +3.3 5,847,372 + -0.2 5,847,372 + +3.1 5,847,372 + +1.8 5,847,372 + -1.5 5,847,372 + +0.3 5,847,372 + -1.2 5,847,372 + +2.3 5,847,372 + -3.0 5,847,372 + -1.2 5,847,372 + -0.5 5,847,372 + -0.9 5,847,373 - -0.6 5,847,373 - +3.1 5,847,373 - -0.8 5,847,373 - +2.6 5,847,373 - +2.6 5,847,373 - -1.5 5,847,373 - +2.8 5,847,373 - -0.3 5,847,373 - -1.2 5,847,373 - +1.3 5,847,373 - -1.7 5,847,373 - +1.8 5,847,373 - -1.0 5,847,373 - +0.3 5,847,373 - +0.0 5,847,373 - -0.3 5,847,373 - +0.0 5,847,373 - -0.2 5,847,373 - +1.0 5,847,373 - +2.8 5,847,373 - -2.3 5,847,373 - -2.2 5,847,373 - +2.8 5,847,373 - +0.4 5,847,517 + Psyr_4934 0.14 -1.2 5,847,518 - Psyr_4934 0.14 +1.0 5,847,724 + Psyr_4934 0.21 -2.1 5,847,724 + Psyr_4934 0.21 +1.3 5,847,724 + Psyr_4934 0.21 +3.7 5,847,724 + Psyr_4934 0.21 +2.8 5,847,775 + Psyr_4934 0.23 +0.3
Or see this region's nucleotide sequence