Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4879 and Psyr_4880 are separated by 145 nucleotides Psyr_4880 and Psyr_4881 overlap by 2 nucleotides Psyr_4881 and Psyr_4882 are separated by 61 nucleotides Psyr_4882 and Psyr_4883 are separated by 40 nucleotides Psyr_4883 and Psyr_4884 are separated by 2 nucleotides
Psyr_4879: Psyr_4879 - hypothetical protein, at 5,791,409 to 5,791,852
_4879
Psyr_4880: Psyr_4880 - conserved hypothetical protein, at 5,791,998 to 5,792,438
_4880
Psyr_4881: Psyr_4881 - RNA methyltransferase TrmH, group 2, at 5,792,437 to 5,792,892
_4881
Psyr_4882: Psyr_4882 - protein translocase subunit secB, at 5,792,954 to 5,793,442
_4882
Psyr_4883: Psyr_4883 - Glutaredoxin, at 5,793,483 to 5,793,734
_4883
Psyr_4884: Psyr_4884 - Rhodanese-like protein, at 5,793,737 to 5,794,150
_4884
Position (kb) 5792
5793 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5791.525 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.730 kb on + strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.731 kb on - strand, within Psyr_4879 at 5791.776 kb on - strand, within Psyr_4879 at 5791.811 kb on - strand at 5791.817 kb on - strand at 5791.835 kb on + strand at 5791.836 kb on - strand at 5791.851 kb on - strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.938 kb on + strand at 5791.939 kb on - strand at 5791.939 kb on - strand at 5791.942 kb on + strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.943 kb on - strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.945 kb on + strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.946 kb on - strand at 5791.971 kb on + strand at 5791.971 kb on + strand at 5791.972 kb on - strand at 5791.972 kb on - strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5791.999 kb on + strand at 5792.000 kb on - strand at 5792.000 kb on - strand at 5792.118 kb on + strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.119 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.194 kb on - strand, within Psyr_4880 at 5792.373 kb on + strand, within Psyr_4880 at 5792.374 kb on - strand, within Psyr_4880 at 5792.384 kb on + strand, within Psyr_4880 at 5792.385 kb on - strand, within Psyr_4880 at 5792.403 kb on - strand at 5792.403 kb on - strand at 5792.499 kb on - strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.596 kb on + strand, within Psyr_4881 at 5792.597 kb on - strand, within Psyr_4881 at 5792.829 kb on + strand, within Psyr_4881 at 5792.860 kb on + strand at 5792.860 kb on + strand at 5792.860 kb on + strand at 5792.861 kb on - strand at 5792.861 kb on - strand at 5793.010 kb on - strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.062 kb on + strand, within Psyr_4882 at 5793.063 kb on - strand, within Psyr_4882 at 5793.063 kb on - strand, within Psyr_4882 at 5793.093 kb on + strand, within Psyr_4882 at 5793.093 kb on + strand, within Psyr_4882 at 5793.094 kb on - strand, within Psyr_4882 at 5793.173 kb on - strand, within Psyr_4882 at 5793.243 kb on - strand, within Psyr_4882 at 5793.252 kb on + strand, within Psyr_4882 at 5793.252 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.369 kb on + strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.370 kb on - strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.373 kb on + strand, within Psyr_4882 at 5793.374 kb on - strand, within Psyr_4882 at 5793.462 kb on - strand at 5793.584 kb on + strand, within Psyr_4883 at 5793.585 kb on - strand, within Psyr_4883 at 5793.585 kb on - strand, within Psyr_4883 at 5793.585 kb on - strand, within Psyr_4883 at 5793.585 kb on - strand, within Psyr_4883 at 5793.687 kb on + strand, within Psyr_4883 at 5793.687 kb on + strand, within Psyr_4883 at 5793.687 kb on + strand, within Psyr_4883 at 5793.687 kb on + strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.688 kb on - strand, within Psyr_4883 at 5793.694 kb on + strand, within Psyr_4883 at 5793.694 kb on + strand, within Psyr_4883 at 5793.704 kb on - strand, within Psyr_4883 at 5793.715 kb on + strand at 5793.715 kb on + strand at 5793.864 kb on - strand, within Psyr_4884 at 5793.885 kb on + strand, within Psyr_4884 at 5793.885 kb on + strand, within Psyr_4884 at 5793.885 kb on + strand, within Psyr_4884 at 5793.885 kb on + strand, within Psyr_4884 at 5793.886 kb on - strand, within Psyr_4884 at 5793.886 kb on - strand, within Psyr_4884 at 5793.886 kb on - strand, within Psyr_4884 at 5793.886 kb on - strand, within Psyr_4884 at 5793.886 kb on - strand, within Psyr_4884
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,791,525 + Psyr_4879 0.26 +0.2 5,791,730 + Psyr_4879 0.72 -1.2 5,791,730 + Psyr_4879 0.72 -2.9 5,791,731 - Psyr_4879 0.73 -0.9 5,791,731 - Psyr_4879 0.73 +0.3 5,791,731 - Psyr_4879 0.73 +0.2 5,791,731 - Psyr_4879 0.73 -3.2 5,791,776 - Psyr_4879 0.83 -1.6 5,791,811 - -0.8 5,791,817 - +0.4 5,791,835 + +1.9 5,791,836 - +2.6 5,791,851 - -1.7 5,791,938 + +4.6 5,791,938 + +0.2 5,791,938 + -2.2 5,791,938 + -0.1 5,791,938 + -1.0 5,791,938 + +1.4 5,791,939 - +0.9 5,791,939 - -0.2 5,791,942 + -0.2 5,791,943 - -0.9 5,791,943 - +0.1 5,791,943 - +1.6 5,791,943 - +0.3 5,791,943 - -2.1 5,791,943 - -2.8 5,791,945 + +3.3 5,791,945 + -1.7 5,791,945 + -0.6 5,791,945 + -1.5 5,791,945 + +3.6 5,791,945 + +2.6 5,791,945 + -0.6 5,791,946 - -3.2 5,791,946 - +3.1 5,791,946 - +2.3 5,791,946 - +2.9 5,791,946 - -0.7 5,791,971 + +0.5 5,791,971 + -0.7 5,791,972 - +3.1 5,791,972 - +3.4 5,791,999 + +1.9 5,791,999 + +1.9 5,791,999 + +0.9 5,791,999 + +0.5 5,791,999 + +1.7 5,791,999 + +3.7 5,792,000 - +5.1 5,792,000 - -0.6 5,792,118 + Psyr_4880 0.27 -0.9 5,792,119 - Psyr_4880 0.27 +1.5 5,792,119 - Psyr_4880 0.27 -1.0 5,792,194 - Psyr_4880 0.44 -0.7 5,792,194 - Psyr_4880 0.44 +4.6 5,792,194 - Psyr_4880 0.44 +0.3 5,792,373 + Psyr_4880 0.85 -1.7 5,792,374 - Psyr_4880 0.85 +0.5 5,792,384 + Psyr_4880 0.88 -1.3 5,792,385 - Psyr_4880 0.88 -0.2 5,792,403 - +1.7 5,792,403 - +1.9 5,792,499 - Psyr_4881 0.14 +0.9 5,792,596 + Psyr_4881 0.35 -2.7 5,792,596 + Psyr_4881 0.35 +0.2 5,792,596 + Psyr_4881 0.35 +0.1 5,792,596 + Psyr_4881 0.35 -1.4 5,792,597 - Psyr_4881 0.35 -3.2 5,792,829 + Psyr_4881 0.86 +0.3 5,792,860 + +3.7 5,792,860 + -1.0 5,792,860 + +1.3 5,792,861 - -0.1 5,792,861 - +1.3 5,793,010 - Psyr_4882 0.11 +0.3 5,793,062 + Psyr_4882 0.22 +3.1 5,793,062 + Psyr_4882 0.22 +3.9 5,793,062 + Psyr_4882 0.22 -0.3 5,793,062 + Psyr_4882 0.22 -2.1 5,793,062 + Psyr_4882 0.22 +0.3 5,793,063 - Psyr_4882 0.22 +0.4 5,793,063 - Psyr_4882 0.22 +3.9 5,793,093 + Psyr_4882 0.28 -0.4 5,793,093 + Psyr_4882 0.28 -1.3 5,793,094 - Psyr_4882 0.29 +0.1 5,793,173 - Psyr_4882 0.45 -2.3 5,793,243 - Psyr_4882 0.59 -0.9 5,793,252 + Psyr_4882 0.61 -3.7 5,793,252 + Psyr_4882 0.61 -0.5 5,793,369 + Psyr_4882 0.85 +0.6 5,793,369 + Psyr_4882 0.85 -0.3 5,793,369 + Psyr_4882 0.85 +3.3 5,793,369 + Psyr_4882 0.85 -1.5 5,793,369 + Psyr_4882 0.85 -2.2 5,793,369 + Psyr_4882 0.85 +1.3 5,793,369 + Psyr_4882 0.85 +3.7 5,793,370 - Psyr_4882 0.85 -1.7 5,793,370 - Psyr_4882 0.85 +2.9 5,793,370 - Psyr_4882 0.85 +2.6 5,793,370 - Psyr_4882 0.85 -0.8 5,793,370 - Psyr_4882 0.85 +3.4 5,793,370 - Psyr_4882 0.85 -3.0 5,793,373 + Psyr_4882 0.86 +1.9 5,793,373 + Psyr_4882 0.86 +3.7 5,793,373 + Psyr_4882 0.86 -2.0 5,793,373 + Psyr_4882 0.86 +1.9 5,793,374 - Psyr_4882 0.86 -0.8 5,793,462 - -1.3 5,793,584 + Psyr_4883 0.40 -3.4 5,793,585 - Psyr_4883 0.40 -2.5 5,793,585 - Psyr_4883 0.40 +0.9 5,793,585 - Psyr_4883 0.40 +3.4 5,793,585 - Psyr_4883 0.40 +0.3 5,793,687 + Psyr_4883 0.81 -1.9 5,793,687 + Psyr_4883 0.81 -0.3 5,793,687 + Psyr_4883 0.81 -0.7 5,793,687 + Psyr_4883 0.81 -0.6 5,793,688 - Psyr_4883 0.81 +4.5 5,793,688 - Psyr_4883 0.81 +4.3 5,793,688 - Psyr_4883 0.81 -0.3 5,793,688 - Psyr_4883 0.81 -0.3 5,793,688 - Psyr_4883 0.81 -1.5 5,793,688 - Psyr_4883 0.81 -0.7 5,793,688 - Psyr_4883 0.81 +4.1 5,793,688 - Psyr_4883 0.81 +2.3 5,793,688 - Psyr_4883 0.81 +2.6 5,793,688 - Psyr_4883 0.81 +2.9 5,793,694 + Psyr_4883 0.84 +0.8 5,793,694 + Psyr_4883 0.84 +2.9 5,793,704 - Psyr_4883 0.88 +3.3 5,793,715 + -0.7 5,793,715 + -0.3 5,793,864 - Psyr_4884 0.31 -1.8 5,793,885 + Psyr_4884 0.36 +1.9 5,793,885 + Psyr_4884 0.36 -3.2 5,793,885 + Psyr_4884 0.36 +0.3 5,793,885 + Psyr_4884 0.36 -2.8 5,793,886 - Psyr_4884 0.36 -4.1 5,793,886 - Psyr_4884 0.36 -3.3 5,793,886 - Psyr_4884 0.36 -2.4 5,793,886 - Psyr_4884 0.36 +2.6 5,793,886 - Psyr_4884 0.36 +0.3
Or see this region's nucleotide sequence