Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4875

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4873 and Psyr_4874 are separated by 26 nucleotidesPsyr_4874 and Psyr_4875 overlap by 4 nucleotidesPsyr_4875 and Psyr_4876 are separated by 28 nucleotides Psyr_4873: Psyr_4873 - Molybdenum-pterin binding protein, at 5,785,597 to 5,785,812 _4873 Psyr_4874: Psyr_4874 - ABC transporter, at 5,785,839 to 5,786,651 _4874 Psyr_4875: Psyr_4875 - Binding-protein-dependent transport systems inner membrane component, at 5,786,648 to 5,787,445 _4875 Psyr_4876: Psyr_4876 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 5,787,474 to 5,788,439 _4876 Position (kb) 5786 5787 5788Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5785.723 kb on + strand, within Psyr_4873at 5785.723 kb on + strand, within Psyr_4873at 5785.723 kb on + strand, within Psyr_4873at 5785.723 kb on + strand, within Psyr_4873at 5785.724 kb on - strand, within Psyr_4873at 5785.724 kb on - strand, within Psyr_4873at 5785.724 kb on - strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.741 kb on + strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.742 kb on - strand, within Psyr_4873at 5785.807 kb on - strandat 5785.840 kb on + strandat 5785.841 kb on - strandat 5785.854 kb on + strandat 5785.854 kb on + strandat 5785.854 kb on + strandat 5785.854 kb on + strandat 5785.854 kb on + strandat 5785.855 kb on - strandat 5785.855 kb on - strandat 5785.855 kb on - strandat 5785.855 kb on - strandat 5785.855 kb on - strandat 5785.855 kb on - strandat 5785.855 kb on - strandat 5785.855 kb on - strandat 5786.093 kb on - strand, within Psyr_4874at 5786.296 kb on - strand, within Psyr_4874at 5786.296 kb on - strand, within Psyr_4874at 5786.393 kb on + strand, within Psyr_4874at 5786.744 kb on + strand, within Psyr_4875at 5786.751 kb on + strand, within Psyr_4875at 5786.751 kb on + strand, within Psyr_4875at 5786.752 kb on - strand, within Psyr_4875at 5786.752 kb on - strand, within Psyr_4875at 5786.902 kb on + strand, within Psyr_4875at 5786.902 kb on + strand, within Psyr_4875at 5786.902 kb on + strand, within Psyr_4875at 5786.902 kb on + strand, within Psyr_4875at 5786.902 kb on + strand, within Psyr_4875at 5786.902 kb on + strand, within Psyr_4875at 5786.902 kb on + strand, within Psyr_4875at 5786.903 kb on - strand, within Psyr_4875at 5786.903 kb on - strand, within Psyr_4875at 5786.903 kb on - strand, within Psyr_4875at 5786.903 kb on - strand, within Psyr_4875at 5786.903 kb on - strand, within Psyr_4875at 5786.903 kb on - strand, within Psyr_4875at 5786.903 kb on - strand, within Psyr_4875at 5786.961 kb on + strand, within Psyr_4875at 5786.961 kb on + strand, within Psyr_4875at 5786.962 kb on - strand, within Psyr_4875at 5786.962 kb on - strand, within Psyr_4875at 5786.979 kb on - strand, within Psyr_4875at 5786.979 kb on - strand, within Psyr_4875at 5787.012 kb on + strand, within Psyr_4875at 5787.012 kb on + strand, within Psyr_4875at 5787.012 kb on + strand, within Psyr_4875at 5787.012 kb on + strand, within Psyr_4875at 5787.013 kb on - strand, within Psyr_4875at 5787.013 kb on - strand, within Psyr_4875at 5787.024 kb on + strand, within Psyr_4875at 5787.024 kb on + strand, within Psyr_4875at 5787.060 kb on - strand, within Psyr_4875at 5787.060 kb on - strand, within Psyr_4875at 5787.293 kb on + strand, within Psyr_4875at 5787.293 kb on + strand, within Psyr_4875at 5787.294 kb on - strand, within Psyr_4875at 5787.294 kb on - strand, within Psyr_4875at 5787.556 kb on + strandat 5787.557 kb on - strandat 5787.557 kb on - strandat 5787.778 kb on + strand, within Psyr_4876at 5787.779 kb on - strand, within Psyr_4876at 5787.779 kb on - strand, within Psyr_4876at 5787.796 kb on + strand, within Psyr_4876at 5787.797 kb on - strand, within Psyr_4876at 5787.797 kb on - strand, within Psyr_4876at 5787.875 kb on - strand, within Psyr_4876at 5787.959 kb on + strand, within Psyr_4876at 5787.967 kb on + strand, within Psyr_4876at 5787.967 kb on + strand, within Psyr_4876at 5787.967 kb on + strand, within Psyr_4876at 5787.967 kb on + strand, within Psyr_4876at 5787.968 kb on - strand, within Psyr_4876at 5787.968 kb on - strand, within Psyr_4876at 5787.968 kb on - strand, within Psyr_4876at 5788.007 kb on - strand, within Psyr_4876at 5788.025 kb on + strand, within Psyr_4876at 5788.124 kb on - strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.132 kb on + strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.133 kb on - strand, within Psyr_4876at 5788.206 kb on + strand, within Psyr_4876at 5788.206 kb on + strand, within Psyr_4876at 5788.206 kb on + strand, within Psyr_4876at 5788.206 kb on + strand, within Psyr_4876at 5788.207 kb on - strand, within Psyr_4876at 5788.207 kb on - strand, within Psyr_4876at 5788.207 kb on - strand, within Psyr_4876at 5788.327 kb on + strand, within Psyr_4876at 5788.327 kb on + strand, within Psyr_4876at 5788.328 kb on - strand, within Psyr_4876at 5788.328 kb on - strand, within Psyr_4876at 5788.328 kb on - strand, within Psyr_4876at 5788.328 kb on - strand, within Psyr_4876at 5788.328 kb on - strand, within Psyr_4876at 5788.328 kb on - strand, within Psyr_4876at 5788.328 kb on - strand, within Psyr_4876at 5788.439 kb on + strandat 5788.439 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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5,785,723 + Psyr_4873 0.58 +3.3
5,785,723 + Psyr_4873 0.58 -0.5
5,785,723 + Psyr_4873 0.58 +3.7
5,785,723 + Psyr_4873 0.58 +1.9
5,785,724 - Psyr_4873 0.59 +2.6
5,785,724 - Psyr_4873 0.59 -1.1
5,785,724 - Psyr_4873 0.59 +2.3
5,785,741 + Psyr_4873 0.67 +0.7
5,785,741 + Psyr_4873 0.67 -3.2
5,785,741 + Psyr_4873 0.67 +3.6
5,785,741 + Psyr_4873 0.67 +3.1
5,785,741 + Psyr_4873 0.67 +3.7
5,785,741 + Psyr_4873 0.67 +3.9
5,785,741 + Psyr_4873 0.67 +0.9
5,785,741 + Psyr_4873 0.67 -1.9
5,785,741 + Psyr_4873 0.67 +0.4
5,785,741 + Psyr_4873 0.67 +3.7
5,785,741 + Psyr_4873 0.67 -1.8
5,785,741 + Psyr_4873 0.67 -1.1
5,785,742 - Psyr_4873 0.67 +1.3
5,785,742 - Psyr_4873 0.67 +1.9
5,785,742 - Psyr_4873 0.67 +0.3
5,785,742 - Psyr_4873 0.67 -1.0
5,785,742 - Psyr_4873 0.67 -1.1
5,785,742 - Psyr_4873 0.67 +2.6
5,785,742 - Psyr_4873 0.67 -0.7
5,785,742 - Psyr_4873 0.67 +0.8
5,785,742 - Psyr_4873 0.67 -0.7
5,785,742 - Psyr_4873 0.67 +3.4
5,785,742 - Psyr_4873 0.67 +0.9
5,785,742 - Psyr_4873 0.67 -1.1
5,785,807 - -0.5
5,785,840 + +2.1
5,785,841 - -1.3
5,785,854 + +3.1
5,785,854 + +2.6
5,785,854 + +4.6
5,785,854 + +0.2
5,785,854 + +4.0
5,785,855 - +0.4
5,785,855 - +2.3
5,785,855 - -0.5
5,785,855 - +1.0
5,785,855 - +4.9
5,785,855 - -1.2
5,785,855 - -0.7
5,785,855 - +0.5
5,786,093 - Psyr_4874 0.31 -1.1
5,786,296 - Psyr_4874 0.56 -0.7
5,786,296 - Psyr_4874 0.56 +0.4
5,786,393 + Psyr_4874 0.68 -2.1
5,786,744 + Psyr_4875 0.12 +1.1
5,786,751 + Psyr_4875 0.13 -0.4
5,786,751 + Psyr_4875 0.13 -1.3
5,786,752 - Psyr_4875 0.13 +0.5
5,786,752 - Psyr_4875 0.13 -0.6
5,786,902 + Psyr_4875 0.32 -0.4
5,786,902 + Psyr_4875 0.32 -1.4
5,786,902 + Psyr_4875 0.32 -1.1
5,786,902 + Psyr_4875 0.32 +4.2
5,786,902 + Psyr_4875 0.32 +4.1
5,786,902 + Psyr_4875 0.32 -1.6
5,786,902 + Psyr_4875 0.32 -0.7
5,786,903 - Psyr_4875 0.32 +2.6
5,786,903 - Psyr_4875 0.32 +2.8
5,786,903 - Psyr_4875 0.32 +4.4
5,786,903 - Psyr_4875 0.32 -0.5
5,786,903 - Psyr_4875 0.32 -0.4
5,786,903 - Psyr_4875 0.32 -0.0
5,786,903 - Psyr_4875 0.32 -2.5
5,786,961 + Psyr_4875 0.39 -1.5
5,786,961 + Psyr_4875 0.39 +0.0
5,786,962 - Psyr_4875 0.39 +0.3
5,786,962 - Psyr_4875 0.39 +0.1
5,786,979 - Psyr_4875 0.41 -1.6
5,786,979 - Psyr_4875 0.41 -0.7
5,787,012 + Psyr_4875 0.46 +1.8
5,787,012 + Psyr_4875 0.46 +2.8
5,787,012 + Psyr_4875 0.46 -0.6
5,787,012 + Psyr_4875 0.46 -2.6
5,787,013 - Psyr_4875 0.46 -1.1
5,787,013 - Psyr_4875 0.46 +4.4
5,787,024 + Psyr_4875 0.47 +0.3
5,787,024 + Psyr_4875 0.47 +4.0
5,787,060 - Psyr_4875 0.52 -0.9
5,787,060 - Psyr_4875 0.52 +2.3
5,787,293 + Psyr_4875 0.81 +4.0
5,787,293 + Psyr_4875 0.81 +0.1
5,787,294 - Psyr_4875 0.81 -1.6
5,787,294 - Psyr_4875 0.81 +3.6
5,787,556 + +1.8
5,787,557 - -2.8
5,787,557 - +4.1
5,787,778 + Psyr_4876 0.31 -1.3
5,787,779 - Psyr_4876 0.32 -0.8
5,787,779 - Psyr_4876 0.32 -0.4
5,787,796 + Psyr_4876 0.33 +4.6
5,787,797 - Psyr_4876 0.33 -1.1
5,787,797 - Psyr_4876 0.33 -0.2
5,787,875 - Psyr_4876 0.42 +1.1
5,787,959 + Psyr_4876 0.50 -1.1
5,787,967 + Psyr_4876 0.51 +0.4
5,787,967 + Psyr_4876 0.51 -0.2
5,787,967 + Psyr_4876 0.51 +0.3
5,787,967 + Psyr_4876 0.51 -0.6
5,787,968 - Psyr_4876 0.51 +3.3
5,787,968 - Psyr_4876 0.51 -1.4
5,787,968 - Psyr_4876 0.51 +3.7
5,788,007 - Psyr_4876 0.55 -0.2
5,788,025 + Psyr_4876 0.57 +0.5
5,788,124 - Psyr_4876 0.67 +0.7
5,788,132 + Psyr_4876 0.68 +0.3
5,788,132 + Psyr_4876 0.68 +3.1
5,788,132 + Psyr_4876 0.68 +4.3
5,788,132 + Psyr_4876 0.68 -0.4
5,788,132 + Psyr_4876 0.68 +1.3
5,788,132 + Psyr_4876 0.68 -1.7
5,788,132 + Psyr_4876 0.68 -1.6
5,788,132 + Psyr_4876 0.68 -1.3
5,788,132 + Psyr_4876 0.68 +1.0
5,788,132 + Psyr_4876 0.68 -1.7
5,788,132 + Psyr_4876 0.68 -2.4
5,788,132 + Psyr_4876 0.68 +1.8
5,788,132 + Psyr_4876 0.68 +5.4
5,788,132 + Psyr_4876 0.68 +3.7
5,788,132 + Psyr_4876 0.68 +3.1
5,788,132 + Psyr_4876 0.68 +0.5
5,788,133 - Psyr_4876 0.68 -0.2
5,788,133 - Psyr_4876 0.68 +0.1
5,788,133 - Psyr_4876 0.68 +2.3
5,788,133 - Psyr_4876 0.68 +1.4
5,788,133 - Psyr_4876 0.68 +1.9
5,788,133 - Psyr_4876 0.68 +1.3
5,788,133 - Psyr_4876 0.68 +2.6
5,788,133 - Psyr_4876 0.68 +4.3
5,788,133 - Psyr_4876 0.68 +1.8
5,788,133 - Psyr_4876 0.68 -2.1
5,788,133 - Psyr_4876 0.68 -1.4
5,788,133 - Psyr_4876 0.68 -0.6
5,788,206 + Psyr_4876 0.76 +0.9
5,788,206 + Psyr_4876 0.76 -3.6
5,788,206 + Psyr_4876 0.76 +0.3
5,788,206 + Psyr_4876 0.76 +0.9
5,788,207 - Psyr_4876 0.76 -0.3
5,788,207 - Psyr_4876 0.76 -1.4
5,788,207 - Psyr_4876 0.76 -0.6
5,788,327 + Psyr_4876 0.88 -0.2
5,788,327 + Psyr_4876 0.88 +1.3
5,788,328 - Psyr_4876 0.88 -1.7
5,788,328 - Psyr_4876 0.88 +4.3
5,788,328 - Psyr_4876 0.88 -0.0
5,788,328 - Psyr_4876 0.88 -1.5
5,788,328 - Psyr_4876 0.88 +3.6
5,788,328 - Psyr_4876 0.88 -0.3
5,788,328 - Psyr_4876 0.88 -0.6
5,788,439 + +4.4
5,788,439 + +3.1

Or see this region's nucleotide sequence