Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4849 and Psyr_4850 are separated by 182 nucleotides Psyr_4850 and Psyr_4851 are separated by 80 nucleotides Psyr_4851 and Psyr_4852 are separated by 136 nucleotides
Psyr_4849: Psyr_4849 - SdiA-regulated, at 5,755,699 to 5,756,643
_4849
Psyr_4850: Psyr_4850 - Fumarylacetoacetate (FAA) hydrolase, at 5,756,826 to 5,757,491
_4850
Psyr_4851: Psyr_4851 - FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal, at 5,757,572 to 5,758,990
_4851
Psyr_4852: Psyr_4852 - D-3-phosphoglycerate dehydrogenase, at 5,759,127 to 5,760,356
_4852
Position (kb) 5757
5758
5759 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5756.574 kb on - strand at 5756.595 kb on - strand at 5756.634 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.748 kb on + strand at 5756.749 kb on - strand at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.219 kb on + strand, within Psyr_4850 at 5757.283 kb on + strand, within Psyr_4850 at 5757.283 kb on + strand, within Psyr_4850 at 5757.284 kb on - strand, within Psyr_4850 at 5757.412 kb on + strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.413 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.417 kb on - strand, within Psyr_4850 at 5757.437 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.472 kb on + strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.473 kb on - strand at 5757.485 kb on - strand at 5757.509 kb on + strand at 5757.510 kb on - strand at 5757.510 kb on - strand at 5757.516 kb on + strand at 5757.517 kb on - strand at 5757.526 kb on - strand at 5757.526 kb on - strand at 5757.526 kb on - strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.642 kb on + strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.643 kb on - strand at 5757.669 kb on + strand at 5757.669 kb on + strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.670 kb on - strand at 5757.678 kb on + strand at 5757.729 kb on + strand, within Psyr_4851 at 5757.729 kb on + strand, within Psyr_4851 at 5757.730 kb on - strand, within Psyr_4851 at 5757.730 kb on - strand, within Psyr_4851 at 5757.943 kb on + strand, within Psyr_4851 at 5757.944 kb on - strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.987 kb on + strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5757.988 kb on - strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.013 kb on + strand, within Psyr_4851 at 5758.014 kb on - strand, within Psyr_4851 at 5758.014 kb on - strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.133 kb on + strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.134 kb on - strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.137 kb on + strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.138 kb on - strand, within Psyr_4851 at 5758.364 kb on - strand, within Psyr_4851 at 5758.584 kb on + strand, within Psyr_4851 at 5758.584 kb on + strand, within Psyr_4851 at 5758.689 kb on + strand, within Psyr_4851 at 5758.689 kb on + strand, within Psyr_4851 at 5758.689 kb on + strand, within Psyr_4851 at 5758.690 kb on - strand, within Psyr_4851 at 5758.832 kb on + strand, within Psyr_4851 at 5758.832 kb on + strand, within Psyr_4851 at 5758.881 kb on + strand at 5758.881 kb on + strand at 5758.882 kb on - strand at 5758.910 kb on + strand at 5758.911 kb on - strand at 5758.911 kb on - strand at 5758.911 kb on - strand at 5758.911 kb on - strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.040 kb on + strand at 5759.041 kb on - strand at 5759.041 kb on - strand at 5759.041 kb on - strand at 5759.041 kb on - strand at 5759.041 kb on - strand at 5759.041 kb on - strand at 5759.041 kb on - strand at 5759.041 kb on - strand at 5759.045 kb on + strand at 5759.045 kb on + strand at 5759.045 kb on + strand at 5759.046 kb on - strand at 5759.046 kb on - strand at 5759.046 kb on - strand at 5759.050 kb on + strand at 5759.051 kb on - strand at 5759.051 kb on - strand at 5759.602 kb on - strand, within Psyr_4852 at 5759.658 kb on + strand, within Psyr_4852 at 5759.658 kb on + strand, within Psyr_4852 at 5759.658 kb on + strand, within Psyr_4852 at 5759.658 kb on + strand, within Psyr_4852 at 5759.658 kb on + strand, within Psyr_4852 at 5759.658 kb on + strand, within Psyr_4852 at 5759.658 kb on + strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.659 kb on - strand, within Psyr_4852 at 5759.664 kb on + strand, within Psyr_4852 at 5759.664 kb on + strand, within Psyr_4852 at 5759.665 kb on - strand, within Psyr_4852 at 5759.665 kb on - strand, within Psyr_4852 at 5759.665 kb on - strand, within Psyr_4852 at 5759.665 kb on - strand, within Psyr_4852 at 5759.665 kb on - strand, within Psyr_4852 at 5759.665 kb on - strand, within Psyr_4852 at 5759.665 kb on - strand, within Psyr_4852
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,756,574 - -0.4 5,756,595 - -1.0 5,756,634 + +0.3 5,756,748 + +2.3 5,756,748 + -0.9 5,756,748 + -2.8 5,756,749 - -1.2 5,757,219 + Psyr_4850 0.59 -0.4 5,757,219 + Psyr_4850 0.59 -0.6 5,757,219 + Psyr_4850 0.59 +4.0 5,757,219 + Psyr_4850 0.59 +0.8 5,757,283 + Psyr_4850 0.69 -0.6 5,757,283 + Psyr_4850 0.69 +1.8 5,757,284 - Psyr_4850 0.69 -0.8 5,757,412 + Psyr_4850 0.88 +0.7 5,757,413 - Psyr_4850 0.88 -0.4 5,757,413 - Psyr_4850 0.88 +0.3 5,757,413 - Psyr_4850 0.88 +0.5 5,757,417 - Psyr_4850 0.89 +3.4 5,757,417 - Psyr_4850 0.89 +2.3 5,757,417 - Psyr_4850 0.89 +0.1 5,757,437 + -0.6 5,757,472 + +0.3 5,757,472 + -0.2 5,757,472 + +1.3 5,757,472 + +0.2 5,757,472 + -2.0 5,757,473 - -1.3 5,757,473 - +4.4 5,757,473 - -0.8 5,757,473 - +1.0 5,757,473 - +0.5 5,757,485 - -0.2 5,757,509 + -2.0 5,757,510 - -1.1 5,757,510 - -2.6 5,757,516 + -0.1 5,757,517 - -0.5 5,757,526 - +2.3 5,757,526 - +2.3 5,757,526 - -0.3 5,757,642 + -0.6 5,757,642 + +1.8 5,757,642 + +0.3 5,757,642 + +0.4 5,757,642 + +2.3 5,757,642 + +3.3 5,757,643 - -0.5 5,757,643 - +3.4 5,757,643 - +1.8 5,757,643 - +1.1 5,757,669 + +4.1 5,757,669 + +0.3 5,757,670 - -0.5 5,757,670 - +0.3 5,757,670 - -0.0 5,757,670 - +4.7 5,757,670 - +0.7 5,757,670 - -1.6 5,757,670 - -0.2 5,757,670 - -1.2 5,757,678 + +1.1 5,757,729 + Psyr_4851 0.11 -0.6 5,757,729 + Psyr_4851 0.11 +0.6 5,757,730 - Psyr_4851 0.11 -0.9 5,757,730 - Psyr_4851 0.11 -3.9 5,757,943 + Psyr_4851 0.26 +1.1 5,757,944 - Psyr_4851 0.26 -1.0 5,757,987 + Psyr_4851 0.29 -0.5 5,757,987 + Psyr_4851 0.29 -1.7 5,757,987 + Psyr_4851 0.29 -0.4 5,757,988 - Psyr_4851 0.29 +0.8 5,757,988 - Psyr_4851 0.29 +3.3 5,757,988 - Psyr_4851 0.29 +2.3 5,757,988 - Psyr_4851 0.29 +1.4 5,757,988 - Psyr_4851 0.29 -1.4 5,757,988 - Psyr_4851 0.29 -0.4 5,757,988 - Psyr_4851 0.29 -0.7 5,757,988 - Psyr_4851 0.29 +4.3 5,757,988 - Psyr_4851 0.29 +0.7 5,758,013 + Psyr_4851 0.31 +1.3 5,758,013 + Psyr_4851 0.31 -0.7 5,758,013 + Psyr_4851 0.31 +0.0 5,758,014 - Psyr_4851 0.31 +0.1 5,758,014 - Psyr_4851 0.31 +2.8 5,758,133 + Psyr_4851 0.40 -0.4 5,758,133 + Psyr_4851 0.40 -0.4 5,758,133 + Psyr_4851 0.40 +1.3 5,758,133 + Psyr_4851 0.40 +3.1 5,758,133 + Psyr_4851 0.40 -0.8 5,758,133 + Psyr_4851 0.40 -1.6 5,758,134 - Psyr_4851 0.40 +0.9 5,758,134 - Psyr_4851 0.40 +0.3 5,758,134 - Psyr_4851 0.40 +4.3 5,758,134 - Psyr_4851 0.40 +2.3 5,758,134 - Psyr_4851 0.40 -0.1 5,758,134 - Psyr_4851 0.40 -0.4 5,758,134 - Psyr_4851 0.40 -0.7 5,758,137 + Psyr_4851 0.40 -1.8 5,758,137 + Psyr_4851 0.40 +4.3 5,758,137 + Psyr_4851 0.40 +4.5 5,758,137 + Psyr_4851 0.40 -0.6 5,758,137 + Psyr_4851 0.40 +2.8 5,758,137 + Psyr_4851 0.40 +0.3 5,758,137 + Psyr_4851 0.40 -1.5 5,758,137 + Psyr_4851 0.40 -0.2 5,758,138 - Psyr_4851 0.40 -2.2 5,758,138 - Psyr_4851 0.40 +4.2 5,758,138 - Psyr_4851 0.40 +0.7 5,758,138 - Psyr_4851 0.40 -1.1 5,758,138 - Psyr_4851 0.40 +0.4 5,758,138 - Psyr_4851 0.40 +3.3 5,758,138 - Psyr_4851 0.40 +1.3 5,758,364 - Psyr_4851 0.56 +1.8 5,758,584 + Psyr_4851 0.71 -0.1 5,758,584 + Psyr_4851 0.71 -0.5 5,758,689 + Psyr_4851 0.79 -0.9 5,758,689 + Psyr_4851 0.79 -1.4 5,758,689 + Psyr_4851 0.79 +0.7 5,758,690 - Psyr_4851 0.79 +0.3 5,758,832 + Psyr_4851 0.89 +0.1 5,758,832 + Psyr_4851 0.89 +0.4 5,758,881 + +1.3 5,758,881 + -2.0 5,758,882 - -1.1 5,758,910 + +2.3 5,758,911 - -0.2 5,758,911 - +0.4 5,758,911 - -1.3 5,758,911 - -0.5 5,759,040 + -3.3 5,759,040 + -1.9 5,759,040 + -0.2 5,759,040 + +3.4 5,759,040 + -1.1 5,759,040 + +3.1 5,759,040 + -2.5 5,759,040 + -0.5 5,759,040 + -1.8 5,759,041 - -0.7 5,759,041 - +1.3 5,759,041 - +3.1 5,759,041 - +2.6 5,759,041 - -2.1 5,759,041 - +3.4 5,759,041 - +1.8 5,759,041 - -0.7 5,759,045 + +3.3 5,759,045 + -1.3 5,759,045 + +1.6 5,759,046 - -1.4 5,759,046 - -0.7 5,759,046 - +4.8 5,759,050 + +0.5 5,759,051 - +3.1 5,759,051 - -1.3 5,759,602 - Psyr_4852 0.39 -1.2 5,759,658 + Psyr_4852 0.43 -1.0 5,759,658 + Psyr_4852 0.43 +2.1 5,759,658 + Psyr_4852 0.43 +2.3 5,759,658 + Psyr_4852 0.43 -2.7 5,759,658 + Psyr_4852 0.43 -0.9 5,759,658 + Psyr_4852 0.43 +1.3 5,759,658 + Psyr_4852 0.43 +2.8 5,759,659 - Psyr_4852 0.43 +3.6 5,759,659 - Psyr_4852 0.43 +1.6 5,759,659 - Psyr_4852 0.43 -2.3 5,759,659 - Psyr_4852 0.43 -0.5 5,759,659 - Psyr_4852 0.43 +3.6 5,759,659 - Psyr_4852 0.43 -0.3 5,759,659 - Psyr_4852 0.43 +3.7 5,759,659 - Psyr_4852 0.43 +1.6 5,759,664 + Psyr_4852 0.44 +2.8 5,759,664 + Psyr_4852 0.44 -2.3 5,759,665 - Psyr_4852 0.44 +3.1 5,759,665 - Psyr_4852 0.44 -0.7 5,759,665 - Psyr_4852 0.44 -0.9 5,759,665 - Psyr_4852 0.44 +0.1 5,759,665 - Psyr_4852 0.44 +5.3 5,759,665 - Psyr_4852 0.44 -1.0 5,759,665 - Psyr_4852 0.44 +1.8
Or see this region's nucleotide sequence