Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4835 and Psyr_4836 are separated by 11 nucleotides Psyr_4836 and Psyr_4837 are separated by 151 nucleotides Psyr_4837 and Psyr_4838 are separated by 86 nucleotides Psyr_4838 and Psyr_4839 overlap by 13 nucleotides
Psyr_4835: Psyr_4835 - imidazolonepropionase, at 5,739,201 to 5,740,406
_4835
Psyr_4836: Psyr_4836 - N-formylglutamate deformylase, at 5,740,418 to 5,741,218
_4836
Psyr_4837: Psyr_4837 - Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 5,741,370 to 5,743,628
_4837
Psyr_4838: Psyr_4838 - transcriptional regulator, MerR family, at 5,743,715 to 5,744,161
_4838
Psyr_4839: Psyr_4839 - hypothetical protein, at 5,744,149 to 5,745,078
_4839
Position (kb) 5741
5742
5743
5744 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5740.569 kb on - strand, within Psyr_4836 at 5740.664 kb on + strand, within Psyr_4836 at 5740.664 kb on + strand, within Psyr_4836 at 5740.664 kb on + strand, within Psyr_4836 at 5740.664 kb on + strand, within Psyr_4836 at 5740.664 kb on + strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.665 kb on - strand, within Psyr_4836 at 5740.713 kb on + strand, within Psyr_4836 at 5740.714 kb on - strand, within Psyr_4836 at 5740.763 kb on + strand, within Psyr_4836 at 5740.788 kb on - strand, within Psyr_4836 at 5740.994 kb on + strand, within Psyr_4836 at 5740.995 kb on - strand, within Psyr_4836 at 5740.995 kb on - strand, within Psyr_4836 at 5740.995 kb on - strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.102 kb on + strand, within Psyr_4836 at 5741.103 kb on - strand, within Psyr_4836 at 5741.103 kb on - strand, within Psyr_4836 at 5741.103 kb on - strand, within Psyr_4836 at 5741.103 kb on - strand, within Psyr_4836 at 5741.103 kb on - strand, within Psyr_4836 at 5741.152 kb on + strand at 5741.298 kb on + strand at 5741.299 kb on - strand at 5741.552 kb on + strand at 5741.719 kb on + strand, within Psyr_4837 at 5741.719 kb on + strand, within Psyr_4837 at 5741.719 kb on + strand, within Psyr_4837 at 5741.719 kb on + strand, within Psyr_4837 at 5741.719 kb on + strand, within Psyr_4837 at 5741.719 kb on + strand, within Psyr_4837 at 5741.719 kb on + strand, within Psyr_4837 at 5741.720 kb on - strand, within Psyr_4837 at 5741.720 kb on - strand, within Psyr_4837 at 5741.720 kb on - strand, within Psyr_4837 at 5741.720 kb on - strand, within Psyr_4837 at 5741.721 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.046 kb on + strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.047 kb on - strand, within Psyr_4837 at 5742.235 kb on + strand, within Psyr_4837 at 5742.235 kb on + strand, within Psyr_4837 at 5742.235 kb on + strand, within Psyr_4837 at 5742.235 kb on + strand, within Psyr_4837 at 5742.235 kb on + strand, within Psyr_4837 at 5742.235 kb on + strand, within Psyr_4837 at 5742.235 kb on + strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.236 kb on - strand, within Psyr_4837 at 5742.293 kb on - strand, within Psyr_4837 at 5742.319 kb on + strand, within Psyr_4837 at 5742.454 kb on + strand, within Psyr_4837 at 5742.454 kb on + strand, within Psyr_4837 at 5742.454 kb on + strand, within Psyr_4837 at 5742.454 kb on + strand, within Psyr_4837 at 5742.455 kb on - strand, within Psyr_4837 at 5742.455 kb on - strand, within Psyr_4837 at 5742.455 kb on - strand, within Psyr_4837 at 5742.526 kb on + strand, within Psyr_4837 at 5742.526 kb on + strand, within Psyr_4837 at 5742.526 kb on + strand, within Psyr_4837 at 5742.526 kb on + strand, within Psyr_4837 at 5742.527 kb on - strand, within Psyr_4837 at 5742.527 kb on - strand, within Psyr_4837 at 5742.527 kb on - strand, within Psyr_4837 at 5742.527 kb on - strand, within Psyr_4837 at 5742.531 kb on - strand, within Psyr_4837 at 5742.644 kb on - strand, within Psyr_4837 at 5742.753 kb on - strand, within Psyr_4837 at 5742.959 kb on + strand, within Psyr_4837 at 5742.960 kb on - strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.084 kb on + strand, within Psyr_4837 at 5743.085 kb on - strand, within Psyr_4837 at 5743.085 kb on - strand, within Psyr_4837 at 5743.085 kb on - strand, within Psyr_4837 at 5743.684 kb on - strand at 5743.773 kb on - strand, within Psyr_4838 at 5743.773 kb on - strand, within Psyr_4838 at 5743.829 kb on + strand, within Psyr_4838 at 5743.829 kb on + strand, within Psyr_4838 at 5743.830 kb on - strand, within Psyr_4838 at 5744.343 kb on + strand, within Psyr_4839 at 5744.365 kb on - strand, within Psyr_4839 at 5744.379 kb on + strand, within Psyr_4839 at 5744.379 kb on + strand, within Psyr_4839 at 5744.379 kb on + strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.402 kb on + strand, within Psyr_4839 at 5744.403 kb on - strand, within Psyr_4839 at 5744.403 kb on - strand, within Psyr_4839 at 5744.403 kb on - strand, within Psyr_4839 at 5744.403 kb on - strand, within Psyr_4839 at 5744.403 kb on - strand, within Psyr_4839 at 5744.510 kb on + strand, within Psyr_4839 at 5744.510 kb on + strand, within Psyr_4839 at 5744.511 kb on - strand, within Psyr_4839 at 5744.511 kb on - strand, within Psyr_4839 at 5744.511 kb on - strand, within Psyr_4839 at 5744.519 kb on + strand, within Psyr_4839 at 5744.519 kb on + strand, within Psyr_4839 at 5744.519 kb on + strand, within Psyr_4839 at 5744.519 kb on + strand, within Psyr_4839 at 5744.520 kb on - strand, within Psyr_4839 at 5744.593 kb on - strand, within Psyr_4839 at 5744.606 kb on - strand, within Psyr_4839 at 5744.625 kb on - strand, within Psyr_4839
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,740,569 - Psyr_4836 0.19 -0.8 5,740,664 + Psyr_4836 0.31 -2.0 5,740,664 + Psyr_4836 0.31 -3.3 5,740,664 + Psyr_4836 0.31 +3.6 5,740,664 + Psyr_4836 0.31 -0.2 5,740,664 + Psyr_4836 0.31 -0.6 5,740,665 - Psyr_4836 0.31 -1.9 5,740,665 - Psyr_4836 0.31 +2.6 5,740,665 - Psyr_4836 0.31 +2.8 5,740,665 - Psyr_4836 0.31 -2.3 5,740,665 - Psyr_4836 0.31 -4.6 5,740,665 - Psyr_4836 0.31 -0.8 5,740,665 - Psyr_4836 0.31 +1.2 5,740,665 - Psyr_4836 0.31 -4.6 5,740,665 - Psyr_4836 0.31 +2.6 5,740,665 - Psyr_4836 0.31 -4.1 5,740,665 - Psyr_4836 0.31 +3.6 5,740,713 + Psyr_4836 0.37 -1.0 5,740,714 - Psyr_4836 0.37 +1.4 5,740,763 + Psyr_4836 0.43 -1.4 5,740,788 - Psyr_4836 0.46 +0.8 5,740,994 + Psyr_4836 0.72 +3.2 5,740,995 - Psyr_4836 0.72 +0.2 5,740,995 - Psyr_4836 0.72 -0.9 5,740,995 - Psyr_4836 0.72 -0.9 5,741,102 + Psyr_4836 0.85 -2.0 5,741,102 + Psyr_4836 0.85 +0.2 5,741,102 + Psyr_4836 0.85 -0.6 5,741,102 + Psyr_4836 0.85 -2.6 5,741,102 + Psyr_4836 0.85 -3.3 5,741,102 + Psyr_4836 0.85 +3.8 5,741,102 + Psyr_4836 0.85 -0.7 5,741,102 + Psyr_4836 0.85 +1.8 5,741,102 + Psyr_4836 0.85 -0.5 5,741,102 + Psyr_4836 0.85 +1.7 5,741,102 + Psyr_4836 0.85 -1.0 5,741,102 + Psyr_4836 0.85 +2.8 5,741,103 - Psyr_4836 0.86 +0.4 5,741,103 - Psyr_4836 0.86 -0.1 5,741,103 - Psyr_4836 0.86 -1.2 5,741,103 - Psyr_4836 0.86 +0.2 5,741,103 - Psyr_4836 0.86 +0.4 5,741,152 + +0.4 5,741,298 + -1.9 5,741,299 - +0.2 5,741,552 + +0.2 5,741,719 + Psyr_4837 0.15 -0.1 5,741,719 + Psyr_4837 0.15 +1.3 5,741,719 + Psyr_4837 0.15 +0.3 5,741,719 + Psyr_4837 0.15 -1.2 5,741,719 + Psyr_4837 0.15 -3.3 5,741,719 + Psyr_4837 0.15 -4.7 5,741,719 + Psyr_4837 0.15 -2.6 5,741,720 - Psyr_4837 0.15 +0.3 5,741,720 - Psyr_4837 0.15 -1.9 5,741,720 - Psyr_4837 0.15 +1.3 5,741,720 - Psyr_4837 0.15 +2.3 5,741,721 + Psyr_4837 0.16 -2.9 5,742,046 + Psyr_4837 0.30 +0.3 5,742,046 + Psyr_4837 0.30 -3.7 5,742,046 + Psyr_4837 0.30 +0.3 5,742,046 + Psyr_4837 0.30 -3.1 5,742,046 + Psyr_4837 0.30 +0.3 5,742,046 + Psyr_4837 0.30 -5.0 5,742,046 + Psyr_4837 0.30 -2.7 5,742,046 + Psyr_4837 0.30 -3.3 5,742,047 - Psyr_4837 0.30 -0.5 5,742,047 - Psyr_4837 0.30 +2.6 5,742,047 - Psyr_4837 0.30 +4.2 5,742,047 - Psyr_4837 0.30 +2.8 5,742,047 - Psyr_4837 0.30 -0.9 5,742,047 - Psyr_4837 0.30 -3.3 5,742,047 - Psyr_4837 0.30 -2.0 5,742,047 - Psyr_4837 0.30 -1.7 5,742,047 - Psyr_4837 0.30 -3.2 5,742,047 - Psyr_4837 0.30 -1.7 5,742,235 + Psyr_4837 0.38 -0.5 5,742,235 + Psyr_4837 0.38 +1.8 5,742,235 + Psyr_4837 0.38 +0.3 5,742,235 + Psyr_4837 0.38 +0.3 5,742,235 + Psyr_4837 0.38 -1.8 5,742,235 + Psyr_4837 0.38 -3.4 5,742,235 + Psyr_4837 0.38 -2.3 5,742,236 - Psyr_4837 0.38 -1.6 5,742,236 - Psyr_4837 0.38 +0.3 5,742,236 - Psyr_4837 0.38 -1.3 5,742,236 - Psyr_4837 0.38 +0.3 5,742,236 - Psyr_4837 0.38 -2.8 5,742,236 - Psyr_4837 0.38 +1.3 5,742,236 - Psyr_4837 0.38 +2.3 5,742,236 - Psyr_4837 0.38 +0.3 5,742,236 - Psyr_4837 0.38 -1.8 5,742,293 - Psyr_4837 0.41 -3.7 5,742,319 + Psyr_4837 0.42 +3.1 5,742,454 + Psyr_4837 0.48 +1.8 5,742,454 + Psyr_4837 0.48 +1.3 5,742,454 + Psyr_4837 0.48 -2.7 5,742,454 + Psyr_4837 0.48 -2.4 5,742,455 - Psyr_4837 0.48 +0.3 5,742,455 - Psyr_4837 0.48 -5.4 5,742,455 - Psyr_4837 0.48 +1.3 5,742,526 + Psyr_4837 0.51 -2.2 5,742,526 + Psyr_4837 0.51 -2.2 5,742,526 + Psyr_4837 0.51 -3.5 5,742,526 + Psyr_4837 0.51 +0.3 5,742,527 - Psyr_4837 0.51 -3.4 5,742,527 - Psyr_4837 0.51 -1.6 5,742,527 - Psyr_4837 0.51 -2.3 5,742,527 - Psyr_4837 0.51 -1.2 5,742,531 - Psyr_4837 0.51 +1.3 5,742,644 - Psyr_4837 0.56 +2.3 5,742,753 - Psyr_4837 0.61 +0.3 5,742,959 + Psyr_4837 0.70 +0.3 5,742,960 - Psyr_4837 0.70 -3.3 5,743,084 + Psyr_4837 0.76 -3.0 5,743,084 + Psyr_4837 0.76 -3.4 5,743,084 + Psyr_4837 0.76 -3.6 5,743,084 + Psyr_4837 0.76 -1.4 5,743,084 + Psyr_4837 0.76 -1.3 5,743,084 + Psyr_4837 0.76 -2.3 5,743,084 + Psyr_4837 0.76 +0.3 5,743,084 + Psyr_4837 0.76 -2.1 5,743,084 + Psyr_4837 0.76 +1.8 5,743,084 + Psyr_4837 0.76 -2.0 5,743,084 + Psyr_4837 0.76 -2.8 5,743,084 + Psyr_4837 0.76 -2.9 5,743,085 - Psyr_4837 0.76 -2.2 5,743,085 - Psyr_4837 0.76 -1.4 5,743,085 - Psyr_4837 0.76 +2.6 5,743,684 - -0.2 5,743,773 - Psyr_4838 0.13 +1.2 5,743,773 - Psyr_4838 0.13 +0.1 5,743,829 + Psyr_4838 0.26 +1.8 5,743,829 + Psyr_4838 0.26 +0.3 5,743,830 - Psyr_4838 0.26 +2.6 5,744,343 + Psyr_4839 0.21 -0.4 5,744,365 - Psyr_4839 0.23 +3.4 5,744,379 + Psyr_4839 0.25 +1.3 5,744,379 + Psyr_4839 0.25 -2.2 5,744,379 + Psyr_4839 0.25 -2.2 5,744,380 - Psyr_4839 0.25 +1.4 5,744,380 - Psyr_4839 0.25 +0.3 5,744,380 - Psyr_4839 0.25 +1.8 5,744,402 + Psyr_4839 0.27 -1.6 5,744,403 - Psyr_4839 0.27 +1.8 5,744,403 - Psyr_4839 0.27 -1.2 5,744,403 - Psyr_4839 0.27 -0.6 5,744,403 - Psyr_4839 0.27 -0.6 5,744,403 - Psyr_4839 0.27 -1.1 5,744,510 + Psyr_4839 0.39 -0.9 5,744,510 + Psyr_4839 0.39 -0.8 5,744,511 - Psyr_4839 0.39 +4.1 5,744,511 - Psyr_4839 0.39 +0.3 5,744,511 - Psyr_4839 0.39 -0.4 5,744,519 + Psyr_4839 0.40 +0.8 5,744,519 + Psyr_4839 0.40 -0.5 5,744,519 + Psyr_4839 0.40 -0.6 5,744,519 + Psyr_4839 0.40 -2.2 5,744,520 - Psyr_4839 0.40 +1.8 5,744,593 - Psyr_4839 0.48 +1.1 5,744,606 - Psyr_4839 0.49 +1.1 5,744,625 - Psyr_4839 0.51 +1.6
Or see this region's nucleotide sequence