Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4732 and Psyr_4733 are separated by 140 nucleotides Psyr_4733 and Psyr_4734 are separated by 102 nucleotides
Psyr_4732: Psyr_4732 - choline dehydrogenase, at 5,609,519 to 5,611,225
_4732
Psyr_4733: Psyr_4733 - betaine aldehyde dehydrogenase, at 5,611,366 to 5,612,838
_4733
Psyr_4734: Psyr_4734 - transcriptional regulator, TetR family, at 5,612,941 to 5,613,534
_4734
Position (kb) 5611
5612
5613 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 5610.566 kb on + strand, within Psyr_4732 at 5610.567 kb on - strand, within Psyr_4732 at 5610.567 kb on - strand, within Psyr_4732 at 5610.567 kb on - strand, within Psyr_4732 at 5610.567 kb on - strand, within Psyr_4732 at 5610.567 kb on - strand, within Psyr_4732 at 5610.843 kb on + strand, within Psyr_4732 at 5610.844 kb on - strand, within Psyr_4732 at 5610.861 kb on + strand, within Psyr_4732 at 5610.861 kb on + strand, within Psyr_4732 at 5610.861 kb on + strand, within Psyr_4732 at 5610.861 kb on + strand, within Psyr_4732 at 5610.861 kb on + strand, within Psyr_4732 at 5610.862 kb on - strand, within Psyr_4732 at 5610.903 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.927 kb on + strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5610.928 kb on - strand, within Psyr_4732 at 5611.023 kb on + strand, within Psyr_4732 at 5611.099 kb on - strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.200 kb on + strand at 5611.201 kb on - strand at 5611.201 kb on - strand at 5611.201 kb on - strand at 5611.201 kb on - strand at 5611.201 kb on - strand at 5611.201 kb on - strand at 5611.201 kb on - strand at 5611.206 kb on + strand at 5611.225 kb on + strand at 5611.225 kb on + strand at 5611.225 kb on + strand at 5611.226 kb on - strand at 5611.226 kb on - strand at 5611.239 kb on + strand at 5611.239 kb on + strand at 5611.239 kb on + strand at 5611.239 kb on + strand at 5611.239 kb on + strand at 5611.239 kb on + strand at 5611.367 kb on + strand at 5611.368 kb on - strand at 5611.368 kb on - strand at 5611.368 kb on - strand at 5611.368 kb on - strand at 5611.820 kb on + strand, within Psyr_4733 at 5611.821 kb on - strand, within Psyr_4733 at 5612.000 kb on + strand, within Psyr_4733 at 5612.000 kb on + strand, within Psyr_4733 at 5612.001 kb on - strand, within Psyr_4733 at 5612.001 kb on - strand, within Psyr_4733 at 5612.074 kb on - strand, within Psyr_4733 at 5612.080 kb on + strand, within Psyr_4733 at 5612.080 kb on + strand, within Psyr_4733 at 5612.080 kb on + strand, within Psyr_4733 at 5612.236 kb on + strand, within Psyr_4733 at 5612.236 kb on + strand, within Psyr_4733 at 5612.265 kb on - strand, within Psyr_4733 at 5612.265 kb on - strand, within Psyr_4733 at 5612.429 kb on + strand, within Psyr_4733 at 5612.429 kb on + strand, within Psyr_4733 at 5612.429 kb on + strand, within Psyr_4733 at 5612.430 kb on - strand, within Psyr_4733 at 5612.430 kb on - strand, within Psyr_4733 at 5612.492 kb on + strand, within Psyr_4733 at 5612.493 kb on - strand, within Psyr_4733 at 5612.493 kb on - strand, within Psyr_4733 at 5612.493 kb on - strand, within Psyr_4733 at 5612.495 kb on + strand, within Psyr_4733 at 5612.495 kb on + strand, within Psyr_4733 at 5612.496 kb on - strand, within Psyr_4733 at 5612.496 kb on - strand, within Psyr_4733 at 5612.496 kb on - strand, within Psyr_4733 at 5612.531 kb on + strand, within Psyr_4733 at 5612.531 kb on + strand, within Psyr_4733 at 5612.795 kb on + strand at 5612.795 kb on + strand at 5612.796 kb on - strand at 5612.796 kb on - strand at 5612.810 kb on + strand at 5612.810 kb on + strand at 5612.838 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.910 kb on + strand at 5612.911 kb on - strand at 5612.911 kb on - strand at 5612.911 kb on - strand at 5612.911 kb on - strand at 5612.975 kb on + strand at 5612.975 kb on + strand at 5612.975 kb on + strand at 5612.975 kb on + strand at 5612.976 kb on - strand at 5612.976 kb on - strand at 5612.976 kb on - strand at 5612.981 kb on + strand at 5613.413 kb on - strand, within Psyr_4734 at 5613.571 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.762 kb on + strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand at 5613.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,610,566 + Psyr_4732 0.61 -1.7 5,610,567 - Psyr_4732 0.61 -0.6 5,610,567 - Psyr_4732 0.61 +3.6 5,610,567 - Psyr_4732 0.61 +0.4 5,610,567 - Psyr_4732 0.61 -0.1 5,610,567 - Psyr_4732 0.61 +1.3 5,610,843 + Psyr_4732 0.78 -1.2 5,610,844 - Psyr_4732 0.78 -0.0 5,610,861 + Psyr_4732 0.79 +0.0 5,610,861 + Psyr_4732 0.79 +2.8 5,610,861 + Psyr_4732 0.79 -0.8 5,610,861 + Psyr_4732 0.79 -2.7 5,610,861 + Psyr_4732 0.79 -2.2 5,610,862 - Psyr_4732 0.79 -1.3 5,610,903 + Psyr_4732 0.81 -1.8 5,610,927 + Psyr_4732 0.82 -1.8 5,610,927 + Psyr_4732 0.82 +0.2 5,610,927 + Psyr_4732 0.82 -1.5 5,610,927 + Psyr_4732 0.82 -0.0 5,610,927 + Psyr_4732 0.82 -2.1 5,610,927 + Psyr_4732 0.82 +0.9 5,610,927 + Psyr_4732 0.82 +1.2 5,610,927 + Psyr_4732 0.82 -1.4 5,610,927 + Psyr_4732 0.82 -0.5 5,610,928 - Psyr_4732 0.83 -0.8 5,610,928 - Psyr_4732 0.83 -3.0 5,610,928 - Psyr_4732 0.83 -0.5 5,610,928 - Psyr_4732 0.83 +3.6 5,610,928 - Psyr_4732 0.83 +3.6 5,610,928 - Psyr_4732 0.83 -0.9 5,610,928 - Psyr_4732 0.83 +4.2 5,610,928 - Psyr_4732 0.83 +0.6 5,610,928 - Psyr_4732 0.83 +3.2 5,610,928 - Psyr_4732 0.83 +0.2 5,610,928 - Psyr_4732 0.83 +2.6 5,610,928 - Psyr_4732 0.83 -1.0 5,610,928 - Psyr_4732 0.83 -1.9 5,610,928 - Psyr_4732 0.83 -1.6 5,611,023 + Psyr_4732 0.88 +2.6 5,611,099 - -0.4 5,611,200 + -3.7 5,611,200 + +0.6 5,611,200 + -1.3 5,611,200 + -1.1 5,611,200 + -2.2 5,611,200 + +3.7 5,611,200 + +2.2 5,611,200 + +2.2 5,611,200 + -0.1 5,611,200 + +2.8 5,611,200 + +0.6 5,611,200 + +2.8 5,611,200 + -0.5 5,611,200 + +2.6 5,611,201 - -0.6 5,611,201 - +0.2 5,611,201 - +2.6 5,611,201 - +3.4 5,611,201 - +2.2 5,611,201 - +2.6 5,611,201 - -2.2 5,611,206 + +4.0 5,611,225 + +0.3 5,611,225 + +0.7 5,611,225 + +0.3 5,611,226 - +1.8 5,611,226 - -1.9 5,611,239 + +2.6 5,611,239 + +1.8 5,611,239 + +0.6 5,611,239 + -0.4 5,611,239 + +1.8 5,611,239 + +0.2 5,611,367 + +3.6 5,611,368 - +5.4 5,611,368 - -1.0 5,611,368 - -1.0 5,611,368 - -1.5 5,611,820 + Psyr_4733 0.31 +2.2 5,611,821 - Psyr_4733 0.31 +0.6 5,612,000 + Psyr_4733 0.43 +2.2 5,612,000 + Psyr_4733 0.43 -5.4 5,612,001 - Psyr_4733 0.43 -1.5 5,612,001 - Psyr_4733 0.43 +0.2 5,612,074 - Psyr_4733 0.48 +0.1 5,612,080 + Psyr_4733 0.48 -1.8 5,612,080 + Psyr_4733 0.48 -1.6 5,612,080 + Psyr_4733 0.48 +0.9 5,612,236 + Psyr_4733 0.59 -1.8 5,612,236 + Psyr_4733 0.59 -0.2 5,612,265 - Psyr_4733 0.61 +1.2 5,612,265 - Psyr_4733 0.61 -2.1 5,612,429 + Psyr_4733 0.72 -2.4 5,612,429 + Psyr_4733 0.72 +0.9 5,612,429 + Psyr_4733 0.72 -2.2 5,612,430 - Psyr_4733 0.72 +0.2 5,612,430 - Psyr_4733 0.72 -1.8 5,612,492 + Psyr_4733 0.76 -1.1 5,612,493 - Psyr_4733 0.77 -1.9 5,612,493 - Psyr_4733 0.77 -1.8 5,612,493 - Psyr_4733 0.77 +3.0 5,612,495 + Psyr_4733 0.77 -1.5 5,612,495 + Psyr_4733 0.77 -1.0 5,612,496 - Psyr_4733 0.77 +4.8 5,612,496 - Psyr_4733 0.77 +3.7 5,612,496 - Psyr_4733 0.77 -1.7 5,612,531 + Psyr_4733 0.79 +0.8 5,612,531 + Psyr_4733 0.79 +1.2 5,612,795 + +2.6 5,612,795 + +2.8 5,612,796 - +0.3 5,612,796 - -1.2 5,612,810 + -1.7 5,612,810 + -1.5 5,612,838 + +1.2 5,612,910 + +1.2 5,612,910 + +0.2 5,612,910 + +4.1 5,612,910 + -1.3 5,612,910 + -1.3 5,612,911 - -0.5 5,612,911 - +3.9 5,612,911 - -0.5 5,612,911 - -0.3 5,612,975 + -2.5 5,612,975 + -3.6 5,612,975 + +2.8 5,612,975 + -3.5 5,612,976 - -0.3 5,612,976 - +0.2 5,612,976 - -2.4 5,612,981 + -1.7 5,613,413 - Psyr_4734 0.79 +2.2 5,613,571 + -0.9 5,613,762 + +4.4 5,613,762 + -1.7 5,613,762 + -2.0 5,613,762 + +1.2 5,613,762 + +1.4 5,613,762 + +4.7 5,613,762 + +3.0 5,613,762 + +2.8 5,613,762 + +0.1 5,613,763 - +0.2 5,613,763 - -0.4 5,613,763 - -0.7 5,613,763 - -1.0 5,613,763 - -1.4 5,613,763 - -2.0 5,613,763 - -1.2
Or see this region's nucleotide sequence