Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4687

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4686 and Psyr_4687 are separated by 64 nucleotidesPsyr_4687 and Psyr_4688 are separated by 90 nucleotidesPsyr_4688 and Psyr_4689 are separated by 138 nucleotides Psyr_4686: Psyr_4686 - 8-amino-7-oxononanoate synthase, at 5,553,587 to 5,554,777 _4686 Psyr_4687: Psyr_4687 - biotin synthase, at 5,554,842 to 5,555,900 _4687 Psyr_4688: Psyr_4688 - Phosphoribosyltransferase, at 5,555,991 to 5,556,725 _4688 Psyr_4689: Psyr_4689 - Helix-turn-helix, Fis-type:Molybdenum-binding protein, N-terminal:Molybdenum-pterin binding protein, at 5,556,864 to 5,557,628 _4689 Position (kb) 5554 5555 5556Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 5553.987 kb on + strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.987 kb on + strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.988 kb on - strand, within Psyr_4686at 5553.993 kb on + strand, within Psyr_4686at 5553.993 kb on + strand, within Psyr_4686at 5553.994 kb on - strand, within Psyr_4686at 5554.458 kb on + strand, within Psyr_4686at 5554.458 kb on + strand, within Psyr_4686at 5554.458 kb on + strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686at 5554.459 kb on - strand, within Psyr_4686at 5554.638 kb on + strand, within Psyr_4686at 5554.638 kb on + strand, within Psyr_4686at 5554.638 kb on + strand, within Psyr_4686at 5554.639 kb on - strand, within Psyr_4686at 5554.639 kb on - strand, within Psyr_4686at 5554.639 kb on - strand, within Psyr_4686at 5554.639 kb on - strand, within Psyr_4686at 5554.861 kb on + strandat 5554.861 kb on + strandat 5554.861 kb on + strandat 5554.861 kb on + strandat 5554.862 kb on - strandat 5554.862 kb on - strandat 5554.862 kb on - strandat 5554.862 kb on - strandat 5555.026 kb on + strand, within Psyr_4687at 5555.129 kb on + strand, within Psyr_4687at 5555.129 kb on + strand, within Psyr_4687at 5555.129 kb on + strandat 5555.129 kb on + strand, within Psyr_4687at 5555.130 kb on - strand, within Psyr_4687at 5555.130 kb on - strand, within Psyr_4687at 5555.130 kb on - strand, within Psyr_4687at 5555.130 kb on - strand, within Psyr_4687at 5555.347 kb on + strand, within Psyr_4687at 5555.347 kb on + strand, within Psyr_4687at 5555.347 kb on + strand, within Psyr_4687at 5555.347 kb on + strand, within Psyr_4687at 5555.347 kb on + strand, within Psyr_4687at 5555.347 kb on + strand, within Psyr_4687at 5555.348 kb on - strand, within Psyr_4687at 5555.348 kb on - strand, within Psyr_4687at 5555.348 kb on - strand, within Psyr_4687at 5555.348 kb on - strand, within Psyr_4687at 5555.348 kb on - strand, within Psyr_4687at 5555.348 kb on - strand, within Psyr_4687at 5555.374 kb on + strand, within Psyr_4687at 5555.390 kb on + strand, within Psyr_4687at 5555.390 kb on + strand, within Psyr_4687at 5555.391 kb on - strand, within Psyr_4687at 5555.434 kb on + strand, within Psyr_4687at 5555.434 kb on + strandat 5555.434 kb on + strand, within Psyr_4687at 5555.434 kb on + strand, within Psyr_4687at 5555.434 kb on + strand, within Psyr_4687at 5555.434 kb on + strand, within Psyr_4687at 5555.434 kb on + strand, within Psyr_4687at 5555.435 kb on - strand, within Psyr_4687at 5555.435 kb on - strand, within Psyr_4687at 5555.435 kb on - strand, within Psyr_4687at 5555.435 kb on - strand, within Psyr_4687at 5555.437 kb on + strand, within Psyr_4687at 5555.438 kb on - strand, within Psyr_4687at 5555.438 kb on - strand, within Psyr_4687at 5555.548 kb on + strand, within Psyr_4687at 5555.548 kb on + strand, within Psyr_4687at 5555.549 kb on - strand, within Psyr_4687at 5555.549 kb on - strand, within Psyr_4687at 5555.549 kb on - strand, within Psyr_4687at 5555.549 kb on - strand, within Psyr_4687at 5555.686 kb on + strand, within Psyr_4687at 5555.687 kb on - strand, within Psyr_4687at 5555.707 kb on + strand, within Psyr_4687at 5555.708 kb on - strand, within Psyr_4687at 5555.708 kb on - strand, within Psyr_4687at 5555.708 kb on - strand, within Psyr_4687at 5555.833 kb on - strandat 5555.975 kb on + strandat 5555.975 kb on + strandat 5555.975 kb on + strandat 5555.975 kb on + strandat 5555.975 kb on + strandat 5555.975 kb on + strandat 5555.975 kb on + strandat 5555.975 kb on + strandat 5555.976 kb on - strandat 5555.976 kb on - strandat 5555.976 kb on - strandat 5555.976 kb on - strandat 5555.976 kb on - strandat 5555.976 kb on - strandat 5555.980 kb on - strandat 5555.980 kb on - strandat 5556.025 kb on - strandat 5556.058 kb on + strandat 5556.058 kb on + strandat 5556.058 kb on + strandat 5556.058 kb on + strandat 5556.058 kb on + strandat 5556.058 kb on + strandat 5556.059 kb on - strandat 5556.059 kb on - strandat 5556.059 kb on - strandat 5556.234 kb on + strand, within Psyr_4688at 5556.235 kb on - strand, within Psyr_4688at 5556.276 kb on - strand, within Psyr_4688at 5556.282 kb on - strand, within Psyr_4688at 5556.325 kb on - strand, within Psyr_4688at 5556.325 kb on - strand, within Psyr_4688at 5556.415 kb on - strand, within Psyr_4688at 5556.415 kb on - strand, within Psyr_4688at 5556.656 kb on - strandat 5556.690 kb on + strandat 5556.690 kb on + strandat 5556.691 kb on - strandat 5556.691 kb on - strandat 5556.691 kb on - strandat 5556.691 kb on - strandat 5556.741 kb on + strandat 5556.741 kb on + strandat 5556.742 kb on - strandat 5556.744 kb on + strandat 5556.744 kb on + strandat 5556.744 kb on + strandat 5556.744 kb on + strandat 5556.744 kb on + strandat 5556.745 kb on - strandat 5556.745 kb on - strandat 5556.745 kb on - strandat 5556.745 kb on - strandat 5556.745 kb on - strandat 5556.829 kb on + strandat 5556.829 kb on + strandat 5556.880 kb on + strandat 5556.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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5,553,987 + Psyr_4686 0.34 -2.1
5,553,987 + Psyr_4686 0.34 +0.3
5,553,987 + Psyr_4686 0.34 +0.3
5,553,987 + Psyr_4686 0.34 -3.1
5,553,987 + Psyr_4686 0.34 -1.7
5,553,988 - Psyr_4686 0.34 +0.3
5,553,988 - Psyr_4686 0.34 -3.2
5,553,988 - Psyr_4686 0.34 -3.4
5,553,988 - Psyr_4686 0.34 +2.6
5,553,993 + Psyr_4686 0.34 +1.3
5,553,993 + Psyr_4686 0.34 -4.1
5,553,994 - Psyr_4686 0.34 -3.1
5,554,458 + Psyr_4686 0.73 +0.3
5,554,458 + Psyr_4686 0.73 -2.1
5,554,458 + Psyr_4686 0.73 +0.3
5,554,459 - Psyr_4686 0.73 -1.5
5,554,459 - Psyr_4686 0.73 +2.6
5,554,459 - Psyr_4686 0.73 -1.7
5,554,459 - Psyr_4686 0.73 +0.3
5,554,638 + Psyr_4686 0.88 +0.3
5,554,638 + Psyr_4686 0.88 -2.5
5,554,638 + Psyr_4686 0.88 +0.3
5,554,639 - Psyr_4686 0.88 -3.2
5,554,639 - Psyr_4686 0.88 +2.3
5,554,639 - Psyr_4686 0.88 +0.3
5,554,639 - Psyr_4686 0.88 -2.6
5,554,861 + -3.6
5,554,861 + +0.3
5,554,861 + +0.3
5,554,861 + -4.0
5,554,862 - -0.6
5,554,862 - +0.3
5,554,862 - +3.3
5,554,862 - -1.7
5,555,026 + Psyr_4687 0.17 +0.3
5,555,129 + Psyr_4687 0.27 +0.3
5,555,129 + Psyr_4687 0.27 +0.3
5,555,129 + +0.3
5,555,129 + Psyr_4687 0.27 +0.3
5,555,130 - Psyr_4687 0.27 -2.7
5,555,130 - Psyr_4687 0.27 -3.2
5,555,130 - Psyr_4687 0.27 +1.3
5,555,130 - Psyr_4687 0.27 -3.0
5,555,347 + Psyr_4687 0.48 -3.7
5,555,347 + Psyr_4687 0.48 +0.3
5,555,347 + Psyr_4687 0.48 -3.3
5,555,347 + Psyr_4687 0.48 -1.3
5,555,347 + Psyr_4687 0.48 +0.3
5,555,347 + Psyr_4687 0.48 +0.3
5,555,348 - Psyr_4687 0.48 +1.8
5,555,348 - Psyr_4687 0.48 -4.0
5,555,348 - Psyr_4687 0.48 +0.3
5,555,348 - Psyr_4687 0.48 +1.8
5,555,348 - Psyr_4687 0.48 +0.3
5,555,348 - Psyr_4687 0.48 -5.0
5,555,374 + Psyr_4687 0.50 +2.6
5,555,390 + Psyr_4687 0.52 -2.9
5,555,390 + Psyr_4687 0.52 +0.3
5,555,391 - Psyr_4687 0.52 -4.3
5,555,434 + Psyr_4687 0.56 -3.7
5,555,434 + -2.6
5,555,434 + Psyr_4687 0.56 -3.1
5,555,434 + Psyr_4687 0.56 +0.3
5,555,434 + Psyr_4687 0.56 -3.1
5,555,434 + Psyr_4687 0.56 +0.3
5,555,434 + Psyr_4687 0.56 +2.3
5,555,435 - Psyr_4687 0.56 -4.4
5,555,435 - Psyr_4687 0.56 -3.4
5,555,435 - Psyr_4687 0.56 -3.0
5,555,435 - Psyr_4687 0.56 -3.7
5,555,437 + Psyr_4687 0.56 +0.3
5,555,438 - Psyr_4687 0.56 +0.3
5,555,438 - Psyr_4687 0.56 +0.3
5,555,548 + Psyr_4687 0.67 +0.3
5,555,548 + Psyr_4687 0.67 +2.3
5,555,549 - Psyr_4687 0.67 +0.3
5,555,549 - Psyr_4687 0.67 +0.3
5,555,549 - Psyr_4687 0.67 +1.3
5,555,549 - Psyr_4687 0.67 +0.3
5,555,686 + Psyr_4687 0.80 -3.8
5,555,687 - Psyr_4687 0.80 +0.3
5,555,707 + Psyr_4687 0.82 +0.3
5,555,708 - Psyr_4687 0.82 -3.8
5,555,708 - Psyr_4687 0.82 -2.9
5,555,708 - Psyr_4687 0.82 +0.3
5,555,833 - -2.2
5,555,975 + +1.3
5,555,975 + -1.5
5,555,975 + +0.3
5,555,975 + -2.4
5,555,975 + -5.0
5,555,975 + +2.3
5,555,975 + +2.3
5,555,975 + -1.7
5,555,976 - +2.8
5,555,976 - +3.8
5,555,976 - -2.1
5,555,976 - +3.4
5,555,976 - -2.7
5,555,976 - +0.3
5,555,980 - -0.3
5,555,980 - +3.3
5,556,025 - +2.6
5,556,058 + +2.6
5,556,058 + +3.3
5,556,058 + +0.3
5,556,058 + +1.8
5,556,058 + -1.3
5,556,058 + -1.1
5,556,059 - +3.6
5,556,059 - +1.8
5,556,059 - -0.0
5,556,234 + Psyr_4688 0.33 +1.2
5,556,235 - Psyr_4688 0.33 +2.3
5,556,276 - Psyr_4688 0.39 -0.9
5,556,282 - Psyr_4688 0.40 -1.0
5,556,325 - Psyr_4688 0.45 +3.8
5,556,325 - Psyr_4688 0.45 +4.1
5,556,415 - Psyr_4688 0.58 -0.4
5,556,415 - Psyr_4688 0.58 -0.4
5,556,656 - -0.6
5,556,690 + +2.6
5,556,690 + -1.6
5,556,691 - -1.7
5,556,691 - -0.8
5,556,691 - -2.6
5,556,691 - -0.6
5,556,741 + -1.3
5,556,741 + +3.1
5,556,742 - -1.7
5,556,744 + +1.8
5,556,744 + +2.8
5,556,744 + -0.7
5,556,744 + -1.1
5,556,744 + -2.8
5,556,745 - -1.2
5,556,745 - -0.8
5,556,745 - +2.8
5,556,745 - +0.3
5,556,745 - +2.3
5,556,829 + +2.3
5,556,829 + -0.0
5,556,880 + +1.7
5,556,880 + +4.5

Or see this region's nucleotide sequence