Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4664 and Psyr_4665 are separated by 492 nucleotides Psyr_4665 and Psyr_4666 are separated by 10 nucleotides Psyr_4666 and Psyr_4667 are separated by 152 nucleotides
Psyr_4664: Psyr_4664 - Filamentation induced by cAMP protein Fic, at 5,527,690 to 5,528,820
_4664
Psyr_4665: Psyr_4665 - membrane protein, putative, at 5,529,313 to 5,530,389
_4665
Psyr_4666: Psyr_4666 - transcriptional regulator, AsnC family, at 5,530,400 to 5,530,861
_4666
Psyr_4667: Psyr_4667 - Tryptophan 2-monooxygenase, at 5,531,014 to 5,532,693
_4667
Position (kb) 5529
5530
5531 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5528.393 kb on + strand, within Psyr_4664 at 5528.394 kb on - strand, within Psyr_4664 at 5528.443 kb on + strand, within Psyr_4664 at 5528.443 kb on + strand, within Psyr_4664 at 5528.444 kb on - strand, within Psyr_4664 at 5528.444 kb on - strand, within Psyr_4664 at 5528.444 kb on - strand, within Psyr_4664 at 5528.547 kb on + strand, within Psyr_4664 at 5528.548 kb on - strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.549 kb on + strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.550 kb on - strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.585 kb on + strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.586 kb on - strand, within Psyr_4664 at 5528.687 kb on - strand, within Psyr_4664 at 5528.687 kb on - strand, within Psyr_4664 at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.732 kb on + strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.733 kb on - strand at 5528.819 kb on - strand at 5528.819 kb on - strand at 5528.918 kb on + strand at 5528.918 kb on + strand at 5528.918 kb on + strand at 5528.919 kb on - strand at 5528.919 kb on - strand at 5528.919 kb on - strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.921 kb on + strand at 5528.922 kb on - strand at 5528.922 kb on - strand at 5528.922 kb on - strand at 5529.064 kb on + strand at 5529.064 kb on + strand at 5529.064 kb on + strand at 5529.064 kb on + strand at 5529.065 kb on - strand at 5529.065 kb on - strand at 5529.065 kb on - strand at 5529.065 kb on - strand at 5529.079 kb on - strand at 5529.079 kb on - strand at 5529.081 kb on + strand at 5529.081 kb on + strand at 5529.082 kb on - strand at 5529.082 kb on - strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.101 kb on + strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.102 kb on - strand at 5529.110 kb on + strand at 5529.110 kb on + strand at 5529.121 kb on + strand at 5529.121 kb on + strand at 5529.121 kb on + strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.122 kb on - strand at 5529.126 kb on - strand at 5529.133 kb on + strand at 5529.134 kb on - strand at 5529.144 kb on - strand at 5529.144 kb on - strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.168 kb on + strand at 5529.169 kb on - strand at 5529.169 kb on - strand at 5529.169 kb on - strand at 5529.179 kb on + strand at 5529.180 kb on - strand at 5529.197 kb on + strand at 5529.198 kb on - strand at 5529.198 kb on - strand at 5529.198 kb on - strand at 5529.220 kb on + strand at 5529.220 kb on + strand at 5529.220 kb on + strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.221 kb on - strand at 5529.251 kb on + strand at 5529.251 kb on + strand at 5529.251 kb on + strand at 5529.447 kb on + strand, within Psyr_4665 at 5529.448 kb on - strand, within Psyr_4665 at 5529.448 kb on - strand, within Psyr_4665 at 5529.568 kb on + strand, within Psyr_4665 at 5529.608 kb on + strand, within Psyr_4665 at 5529.609 kb on - strand, within Psyr_4665 at 5529.646 kb on + strand, within Psyr_4665 at 5529.646 kb on + strand, within Psyr_4665 at 5529.647 kb on - strand, within Psyr_4665 at 5529.647 kb on - strand, within Psyr_4665 at 5529.647 kb on - strand, within Psyr_4665 at 5529.682 kb on + strand, within Psyr_4665 at 5529.757 kb on + strand, within Psyr_4665 at 5529.757 kb on + strand, within Psyr_4665 at 5529.758 kb on - strand, within Psyr_4665 at 5529.758 kb on - strand, within Psyr_4665 at 5529.758 kb on - strand, within Psyr_4665 at 5529.847 kb on + strand, within Psyr_4665 at 5529.847 kb on + strand, within Psyr_4665 at 5529.847 kb on + strand, within Psyr_4665 at 5529.848 kb on - strand, within Psyr_4665 at 5529.848 kb on - strand, within Psyr_4665 at 5529.869 kb on - strand, within Psyr_4665 at 5529.907 kb on + strand, within Psyr_4665 at 5530.104 kb on + strand, within Psyr_4665 at 5530.387 kb on + strand at 5530.388 kb on - strand at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.619 kb on + strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.620 kb on - strand, within Psyr_4666 at 5530.724 kb on + strand, within Psyr_4666 at 5530.725 kb on - strand, within Psyr_4666 at 5530.725 kb on - strand, within Psyr_4666 at 5530.725 kb on - strand, within Psyr_4666 at 5530.725 kb on - strand, within Psyr_4666 at 5530.725 kb on - strand, within Psyr_4666 at 5530.725 kb on - strand, within Psyr_4666 at 5530.725 kb on - strand, within Psyr_4666 at 5530.770 kb on + strand, within Psyr_4666 at 5530.873 kb on + strand at 5530.873 kb on + strand at 5530.873 kb on + strand at 5530.874 kb on - strand at 5530.874 kb on - strand at 5530.952 kb on + strand at 5530.952 kb on + strand at 5530.952 kb on + strand at 5530.955 kb on + strand at 5530.975 kb on - strand at 5531.161 kb on - strand at 5531.194 kb on + strand, within Psyr_4667 at 5531.230 kb on + strand, within Psyr_4667 at 5531.230 kb on + strand, within Psyr_4667 at 5531.231 kb on - strand, within Psyr_4667 at 5531.231 kb on - strand, within Psyr_4667 at 5531.347 kb on + strand, within Psyr_4667 at 5531.347 kb on + strand, within Psyr_4667 at 5531.347 kb on + strand, within Psyr_4667 at 5531.348 kb on - strand, within Psyr_4667 at 5531.348 kb on - strand, within Psyr_4667 at 5531.348 kb on - strand, within Psyr_4667 at 5531.348 kb on - strand, within Psyr_4667
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,528,393 + Psyr_4664 0.62 -1.1 5,528,394 - Psyr_4664 0.62 -0.1 5,528,443 + Psyr_4664 0.67 +4.0 5,528,443 + Psyr_4664 0.67 -2.6 5,528,444 - Psyr_4664 0.67 +0.3 5,528,444 - Psyr_4664 0.67 +0.1 5,528,444 - Psyr_4664 0.67 -1.2 5,528,547 + Psyr_4664 0.76 -0.8 5,528,548 - Psyr_4664 0.76 +2.8 5,528,549 + Psyr_4664 0.76 +1.6 5,528,549 + Psyr_4664 0.76 -0.2 5,528,549 + Psyr_4664 0.76 -0.9 5,528,549 + Psyr_4664 0.76 +0.6 5,528,549 + Psyr_4664 0.76 -0.7 5,528,549 + Psyr_4664 0.76 -3.1 5,528,549 + Psyr_4664 0.76 +0.2 5,528,549 + Psyr_4664 0.76 -1.4 5,528,549 + Psyr_4664 0.76 +3.7 5,528,550 - Psyr_4664 0.76 +0.7 5,528,550 - Psyr_4664 0.76 +4.4 5,528,550 - Psyr_4664 0.76 +3.3 5,528,550 - Psyr_4664 0.76 +0.1 5,528,550 - Psyr_4664 0.76 -2.2 5,528,550 - Psyr_4664 0.76 -0.9 5,528,550 - Psyr_4664 0.76 +0.8 5,528,585 + Psyr_4664 0.79 -2.7 5,528,585 + Psyr_4664 0.79 +0.4 5,528,585 + Psyr_4664 0.79 -4.2 5,528,585 + Psyr_4664 0.79 -1.0 5,528,585 + Psyr_4664 0.79 +0.8 5,528,585 + Psyr_4664 0.79 -0.5 5,528,585 + Psyr_4664 0.79 -0.6 5,528,585 + Psyr_4664 0.79 -0.4 5,528,585 + Psyr_4664 0.79 -3.1 5,528,586 - Psyr_4664 0.79 -1.3 5,528,586 - Psyr_4664 0.79 +2.3 5,528,586 - Psyr_4664 0.79 +2.6 5,528,586 - Psyr_4664 0.79 -1.2 5,528,586 - Psyr_4664 0.79 +0.7 5,528,586 - Psyr_4664 0.79 +1.3 5,528,586 - Psyr_4664 0.79 +3.8 5,528,586 - Psyr_4664 0.79 -1.6 5,528,687 - Psyr_4664 0.88 -0.2 5,528,687 - Psyr_4664 0.88 -1.0 5,528,732 + +1.3 5,528,732 + +0.4 5,528,732 + -1.2 5,528,732 + +2.8 5,528,732 + -0.3 5,528,732 + +1.8 5,528,732 + -2.1 5,528,732 + +1.3 5,528,733 - +0.4 5,528,733 - +3.1 5,528,733 - +2.8 5,528,733 - -1.4 5,528,733 - +2.6 5,528,733 - -2.2 5,528,733 - -1.7 5,528,733 - +0.9 5,528,733 - +0.1 5,528,733 - +0.1 5,528,733 - +3.6 5,528,819 - +2.6 5,528,819 - +2.3 5,528,918 + +2.6 5,528,918 + +1.8 5,528,918 + +0.3 5,528,919 - -1.7 5,528,919 - -0.9 5,528,919 - -2.4 5,528,921 + -1.9 5,528,921 + -1.7 5,528,921 + +0.1 5,528,921 + -1.0 5,528,921 + -0.2 5,528,921 + -0.5 5,528,921 + +3.3 5,528,921 + -2.1 5,528,922 - -1.2 5,528,922 - -1.0 5,528,922 - +2.6 5,529,064 + -0.7 5,529,064 + +0.3 5,529,064 + +0.3 5,529,064 + +0.9 5,529,065 - -2.5 5,529,065 - -0.1 5,529,065 - +1.3 5,529,065 - +3.3 5,529,079 - +1.3 5,529,079 - -0.8 5,529,081 + -3.0 5,529,081 + +2.6 5,529,082 - +0.1 5,529,082 - +4.6 5,529,101 + -2.9 5,529,101 + +2.1 5,529,101 + -0.5 5,529,101 + +0.3 5,529,101 + +0.1 5,529,101 + +0.1 5,529,101 + +2.3 5,529,101 + -0.4 5,529,102 - +0.4 5,529,102 - +0.2 5,529,102 - +2.6 5,529,102 - +2.8 5,529,102 - -0.5 5,529,102 - +3.1 5,529,102 - -1.4 5,529,110 + +3.1 5,529,110 + -0.3 5,529,121 + +0.1 5,529,121 + +2.6 5,529,121 + -2.3 5,529,122 - +0.5 5,529,122 - +1.3 5,529,122 - -0.6 5,529,122 - +3.2 5,529,122 - +1.2 5,529,126 - +1.3 5,529,133 + -1.8 5,529,134 - +2.6 5,529,144 - +0.6 5,529,144 - +1.8 5,529,168 + +3.1 5,529,168 + +0.3 5,529,168 + +1.8 5,529,168 + +2.3 5,529,168 + +0.1 5,529,169 - -1.1 5,529,169 - -1.0 5,529,169 - -1.0 5,529,179 + +2.6 5,529,180 - -1.7 5,529,197 + -1.0 5,529,198 - +0.1 5,529,198 - -0.2 5,529,198 - +0.6 5,529,220 + +3.1 5,529,220 + +0.7 5,529,220 + -1.9 5,529,221 - +4.2 5,529,221 - -0.6 5,529,221 - +3.6 5,529,221 - +1.3 5,529,221 - +0.3 5,529,221 - -1.2 5,529,221 - -1.4 5,529,221 - +3.6 5,529,221 - +0.3 5,529,251 + -0.1 5,529,251 + +4.3 5,529,251 + +2.3 5,529,447 + Psyr_4665 0.12 +0.6 5,529,448 - Psyr_4665 0.13 +1.0 5,529,448 - Psyr_4665 0.13 +2.6 5,529,568 + Psyr_4665 0.24 -0.0 5,529,608 + Psyr_4665 0.27 +0.3 5,529,609 - Psyr_4665 0.27 +1.0 5,529,646 + Psyr_4665 0.31 +0.3 5,529,646 + Psyr_4665 0.31 +4.4 5,529,647 - Psyr_4665 0.31 -0.9 5,529,647 - Psyr_4665 0.31 -1.4 5,529,647 - Psyr_4665 0.31 +0.3 5,529,682 + Psyr_4665 0.34 -1.3 5,529,757 + Psyr_4665 0.41 +1.0 5,529,757 + Psyr_4665 0.41 -3.1 5,529,758 - Psyr_4665 0.41 +1.3 5,529,758 - Psyr_4665 0.41 +0.3 5,529,758 - Psyr_4665 0.41 -0.3 5,529,847 + Psyr_4665 0.50 +5.2 5,529,847 + Psyr_4665 0.50 +1.8 5,529,847 + Psyr_4665 0.50 -0.6 5,529,848 - Psyr_4665 0.50 +0.2 5,529,848 - Psyr_4665 0.50 -0.7 5,529,869 - Psyr_4665 0.52 -0.6 5,529,907 + Psyr_4665 0.55 +1.1 5,530,104 + Psyr_4665 0.73 -0.1 5,530,387 + +0.3 5,530,388 - -1.6 5,530,619 + Psyr_4666 0.47 -0.7 5,530,619 + Psyr_4666 0.47 -4.4 5,530,619 + Psyr_4666 0.47 +2.8 5,530,619 + Psyr_4666 0.47 +4.1 5,530,619 + Psyr_4666 0.47 -0.2 5,530,619 + Psyr_4666 0.47 +3.3 5,530,619 + Psyr_4666 0.47 -3.7 5,530,619 + Psyr_4666 0.47 -3.9 5,530,619 + Psyr_4666 0.47 -1.1 5,530,620 - Psyr_4666 0.48 +3.8 5,530,620 - Psyr_4666 0.48 +3.7 5,530,620 - Psyr_4666 0.48 +0.1 5,530,620 - Psyr_4666 0.48 -0.7 5,530,620 - Psyr_4666 0.48 -1.6 5,530,620 - Psyr_4666 0.48 -1.6 5,530,620 - Psyr_4666 0.48 -0.4 5,530,620 - Psyr_4666 0.48 -1.0 5,530,620 - Psyr_4666 0.48 +2.3 5,530,620 - Psyr_4666 0.48 +2.6 5,530,620 - Psyr_4666 0.48 -2.6 5,530,724 + Psyr_4666 0.70 -2.5 5,530,725 - Psyr_4666 0.70 -1.0 5,530,725 - Psyr_4666 0.70 -0.8 5,530,725 - Psyr_4666 0.70 -1.1 5,530,725 - Psyr_4666 0.70 -0.5 5,530,725 - Psyr_4666 0.70 -0.9 5,530,725 - Psyr_4666 0.70 -1.7 5,530,725 - Psyr_4666 0.70 +0.2 5,530,770 + Psyr_4666 0.80 +2.6 5,530,873 + -1.4 5,530,873 + -0.2 5,530,873 + -1.6 5,530,874 - -1.1 5,530,874 - +0.2 5,530,952 + -0.1 5,530,952 + +5.0 5,530,952 + +3.1 5,530,955 + +3.4 5,530,975 - +3.8 5,531,161 - -0.9 5,531,194 + Psyr_4667 0.11 +0.3 5,531,230 + Psyr_4667 0.13 +0.3 5,531,230 + Psyr_4667 0.13 -1.7 5,531,231 - Psyr_4667 0.13 -1.9 5,531,231 - Psyr_4667 0.13 +3.3 5,531,347 + Psyr_4667 0.20 +1.0 5,531,347 + Psyr_4667 0.20 +3.7 5,531,347 + Psyr_4667 0.20 -0.1 5,531,348 - Psyr_4667 0.20 -0.3 5,531,348 - Psyr_4667 0.20 +0.0 5,531,348 - Psyr_4667 0.20 +0.1 5,531,348 - Psyr_4667 0.20 +0.3
Or see this region's nucleotide sequence