Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4633 and Psyr_4634 are separated by 97 nucleotides Psyr_4634 and Psyr_4635 are separated by 98 nucleotides Psyr_4635 and Psyr_4636 overlap by 10 nucleotides
Psyr_4633: Psyr_4633 - SpoVR, at 5,493,757 to 5,495,319
_4633
Psyr_4634: Psyr_4634 - Polynucleotide adenylyltransferase:Metal-dependent phosphohydrolase, HD subdomain protein, at 5,495,417 to 5,496,643
_4634
Psyr_4635: Psyr_4635 - 7, 8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK, at 5,496,742 to 5,497,266
_4635
Psyr_4636: Psyr_4636 - Dihydroneopterin aldolase family:Dihydroneopterin aldolase, at 5,497,257 to 5,497,610
_4636
Position (kb) 5495
5496
5497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5494.480 kb on + strand, within Psyr_4633 at 5494.480 kb on + strand, within Psyr_4633 at 5494.480 kb on + strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.481 kb on - strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.558 kb on + strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.559 kb on - strand, within Psyr_4633 at 5494.565 kb on - strand, within Psyr_4633 at 5494.618 kb on + strand, within Psyr_4633 at 5494.618 kb on + strand, within Psyr_4633 at 5494.619 kb on - strand, within Psyr_4633 at 5494.619 kb on - strand, within Psyr_4633 at 5494.640 kb on - strand, within Psyr_4633 at 5494.729 kb on + strand, within Psyr_4633 at 5494.729 kb on + strand, within Psyr_4633 at 5494.730 kb on - strand, within Psyr_4633 at 5494.730 kb on - strand, within Psyr_4633 at 5494.732 kb on + strand, within Psyr_4633 at 5494.732 kb on + strand, within Psyr_4633 at 5494.733 kb on - strand, within Psyr_4633 at 5494.733 kb on - strand, within Psyr_4633 at 5494.741 kb on - strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.771 kb on + strand, within Psyr_4633 at 5494.772 kb on - strand, within Psyr_4633 at 5494.772 kb on - strand, within Psyr_4633 at 5494.909 kb on + strand, within Psyr_4633 at 5494.909 kb on + strand, within Psyr_4633 at 5494.909 kb on + strand, within Psyr_4633 at 5494.910 kb on - strand, within Psyr_4633 at 5494.910 kb on - strand, within Psyr_4633 at 5495.030 kb on + strand, within Psyr_4633 at 5495.030 kb on + strand, within Psyr_4633 at 5495.031 kb on - strand, within Psyr_4633 at 5495.045 kb on - strand, within Psyr_4633 at 5495.045 kb on - strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.080 kb on + strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.081 kb on - strand, within Psyr_4633 at 5495.299 kb on - strand at 5495.317 kb on + strand at 5495.341 kb on - strand at 5495.404 kb on - strand at 5495.426 kb on + strand at 5495.426 kb on + strand at 5495.426 kb on + strand at 5495.426 kb on + strand at 5496.093 kb on + strand, within Psyr_4634 at 5496.105 kb on + strand, within Psyr_4634 at 5496.623 kb on + strand at 5496.624 kb on - strand at 5496.692 kb on + strand at 5496.692 kb on + strand at 5496.692 kb on + strand at 5496.692 kb on + strand at 5496.693 kb on - strand at 5496.747 kb on + strand at 5496.747 kb on + strand at 5496.748 kb on - strand at 5496.904 kb on + strand, within Psyr_4635
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,494,480 + Psyr_4633 0.46 -0.8 5,494,480 + Psyr_4633 0.46 +2.8 5,494,480 + Psyr_4633 0.46 -0.7 5,494,481 - Psyr_4633 0.46 +2.6 5,494,481 - Psyr_4633 0.46 +2.6 5,494,481 - Psyr_4633 0.46 -0.9 5,494,481 - Psyr_4633 0.46 +3.7 5,494,558 + Psyr_4633 0.51 +0.8 5,494,558 + Psyr_4633 0.51 +3.4 5,494,558 + Psyr_4633 0.51 +0.6 5,494,558 + Psyr_4633 0.51 -0.1 5,494,558 + Psyr_4633 0.51 +0.1 5,494,558 + Psyr_4633 0.51 -0.1 5,494,558 + Psyr_4633 0.51 -1.0 5,494,559 - Psyr_4633 0.51 +0.1 5,494,559 - Psyr_4633 0.51 -0.1 5,494,559 - Psyr_4633 0.51 +0.9 5,494,559 - Psyr_4633 0.51 +0.2 5,494,559 - Psyr_4633 0.51 -0.8 5,494,559 - Psyr_4633 0.51 -0.4 5,494,565 - Psyr_4633 0.52 +0.8 5,494,618 + Psyr_4633 0.55 +3.4 5,494,618 + Psyr_4633 0.55 -0.2 5,494,619 - Psyr_4633 0.55 -0.7 5,494,619 - Psyr_4633 0.55 -0.4 5,494,640 - Psyr_4633 0.56 -1.8 5,494,729 + Psyr_4633 0.62 -1.0 5,494,729 + Psyr_4633 0.62 -0.5 5,494,730 - Psyr_4633 0.62 -0.3 5,494,730 - Psyr_4633 0.62 -0.8 5,494,732 + Psyr_4633 0.62 +3.2 5,494,732 + Psyr_4633 0.62 -2.8 5,494,733 - Psyr_4633 0.62 +2.6 5,494,733 - Psyr_4633 0.62 -0.4 5,494,741 - Psyr_4633 0.63 +5.0 5,494,771 + Psyr_4633 0.65 +2.8 5,494,771 + Psyr_4633 0.65 +1.3 5,494,771 + Psyr_4633 0.65 +1.1 5,494,771 + Psyr_4633 0.65 +3.2 5,494,771 + Psyr_4633 0.65 +2.0 5,494,772 - Psyr_4633 0.65 -0.1 5,494,772 - Psyr_4633 0.65 -4.1 5,494,909 + Psyr_4633 0.74 -2.0 5,494,909 + Psyr_4633 0.74 +1.8 5,494,909 + Psyr_4633 0.74 -1.0 5,494,910 - Psyr_4633 0.74 +0.0 5,494,910 - Psyr_4633 0.74 +3.6 5,495,030 + Psyr_4633 0.81 +2.0 5,495,030 + Psyr_4633 0.81 -0.8 5,495,031 - Psyr_4633 0.82 -0.8 5,495,045 - Psyr_4633 0.82 +2.6 5,495,045 - Psyr_4633 0.82 -2.2 5,495,080 + Psyr_4633 0.85 -0.8 5,495,080 + Psyr_4633 0.85 +0.9 5,495,080 + Psyr_4633 0.85 -1.0 5,495,080 + Psyr_4633 0.85 -2.6 5,495,081 - Psyr_4633 0.85 -1.5 5,495,081 - Psyr_4633 0.85 -0.1 5,495,081 - Psyr_4633 0.85 +3.8 5,495,081 - Psyr_4633 0.85 -1.1 5,495,299 - +4.3 5,495,317 + -0.1 5,495,341 - +2.8 5,495,404 - +0.8 5,495,426 + -1.2 5,495,426 + -1.5 5,495,426 + +2.2 5,495,426 + -0.7 5,496,093 + Psyr_4634 0.55 -1.7 5,496,105 + Psyr_4634 0.56 +0.2 5,496,623 + -0.5 5,496,624 - -0.6 5,496,692 + +0.2 5,496,692 + -0.2 5,496,692 + +0.2 5,496,692 + +3.4 5,496,693 - +4.1 5,496,747 + -1.6 5,496,747 + -1.8 5,496,748 - +1.8 5,496,904 + Psyr_4635 0.31 -3.4
Or see this region's nucleotide sequence