Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4414

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4413 and Psyr_4414 are separated by 348 nucleotidesPsyr_4414 and Psyr_4415 overlap by 1 nucleotidesPsyr_4415 and Psyr_4416 overlap by 4 nucleotides Psyr_4413: Psyr_4413 - conserved hypothetical protein, at 5,276,400 to 5,277,215 _4413 Psyr_4414: Psyr_4414 - precorrin-3 methyltransferase, at 5,277,564 to 5,279,267 _4414 Psyr_4415: Psyr_4415 - cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase, at 5,279,267 to 5,280,001 _4415 Psyr_4416: Psyr_4416 - precorrin-8X methylmutase, at 5,279,998 to 5,280,624 _4416 Position (kb) 5277 5278 5279 5280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 5276.784 kb on - strand, within Psyr_4413at 5276.784 kb on - strand, within Psyr_4413at 5276.857 kb on + strand, within Psyr_4413at 5276.857 kb on + strand, within Psyr_4413at 5276.858 kb on - strand, within Psyr_4413at 5276.858 kb on - strand, within Psyr_4413at 5276.914 kb on + strand, within Psyr_4413at 5276.914 kb on + strand, within Psyr_4413at 5276.915 kb on - strand, within Psyr_4413at 5277.014 kb on + strand, within Psyr_4413at 5277.100 kb on - strand, within Psyr_4413at 5277.125 kb on - strand, within Psyr_4413at 5277.173 kb on - strandat 5277.173 kb on - strandat 5277.173 kb on - strandat 5277.173 kb on - strandat 5277.221 kb on + strandat 5277.229 kb on + strandat 5277.230 kb on - strandat 5277.230 kb on - strandat 5277.270 kb on + strandat 5277.384 kb on - strandat 5277.546 kb on + strandat 5277.547 kb on - strandat 5277.573 kb on - strandat 5277.586 kb on + strandat 5277.599 kb on + strandat 5277.601 kb on + strandat 5277.602 kb on - strandat 5277.602 kb on - strandat 5277.602 kb on - strandat 5277.841 kb on + strand, within Psyr_4414at 5277.841 kb on + strand, within Psyr_4414at 5277.842 kb on - strand, within Psyr_4414at 5277.842 kb on - strand, within Psyr_4414at 5278.225 kb on + strand, within Psyr_4414at 5278.225 kb on + strand, within Psyr_4414at 5278.225 kb on + strand, within Psyr_4414at 5278.226 kb on - strand, within Psyr_4414at 5278.226 kb on - strand, within Psyr_4414at 5278.226 kb on - strand, within Psyr_4414at 5278.643 kb on + strand, within Psyr_4414at 5278.643 kb on + strand, within Psyr_4414at 5278.643 kb on + strand, within Psyr_4414at 5278.643 kb on + strand, within Psyr_4414at 5278.644 kb on - strand, within Psyr_4414at 5278.644 kb on - strand, within Psyr_4414at 5278.652 kb on - strand, within Psyr_4414at 5278.652 kb on - strand, within Psyr_4414at 5278.652 kb on - strand, within Psyr_4414at 5279.101 kb on + strandat 5279.102 kb on - strandat 5279.102 kb on - strandat 5279.134 kb on + strandat 5279.134 kb on + strandat 5279.135 kb on - strandat 5279.135 kb on - strandat 5279.135 kb on - strandat 5279.135 kb on - strandat 5279.297 kb on - strandat 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.383 kb on - strand, within Psyr_4415at 5279.383 kb on - strand, within Psyr_4415at 5279.616 kb on + strand, within Psyr_4415at 5279.617 kb on - strand, within Psyr_4415at 5279.617 kb on - strand, within Psyr_4415at 5279.617 kb on - strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.659 kb on - strand, within Psyr_4415at 5279.743 kb on - strand, within Psyr_4415at 5279.743 kb on - strand, within Psyr_4415at 5279.743 kb on - strand, within Psyr_4415at 5279.875 kb on + strand, within Psyr_4415at 5279.892 kb on + strand, within Psyr_4415at 5279.892 kb on + strand, within Psyr_4415at 5279.892 kb on + strand, within Psyr_4415at 5279.893 kb on - strand, within Psyr_4415at 5279.893 kb on - strand, within Psyr_4415at 5279.893 kb on - strand, within Psyr_4415at 5280.200 kb on + strand, within Psyr_4416at 5280.200 kb on + strand, within Psyr_4416at 5280.201 kb on - strand, within Psyr_4416at 5280.201 kb on - strand, within Psyr_4416at 5280.235 kb on + strand, within Psyr_4416at 5280.235 kb on + strand, within Psyr_4416at 5280.236 kb on - strand, within Psyr_4416at 5280.236 kb on - strand, within Psyr_4416

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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5,276,784 - Psyr_4413 0.47 -0.2
5,276,784 - Psyr_4413 0.47 +1.5
5,276,857 + Psyr_4413 0.56 +2.8
5,276,857 + Psyr_4413 0.56 +3.5
5,276,858 - Psyr_4413 0.56 -0.3
5,276,858 - Psyr_4413 0.56 +3.4
5,276,914 + Psyr_4413 0.63 -0.9
5,276,914 + Psyr_4413 0.63 +3.2
5,276,915 - Psyr_4413 0.63 -1.8
5,277,014 + Psyr_4413 0.75 -1.9
5,277,100 - Psyr_4413 0.86 +0.1
5,277,125 - Psyr_4413 0.89 -0.3
5,277,173 - +1.0
5,277,173 - +2.4
5,277,173 - +2.8
5,277,173 - -0.4
5,277,221 + -1.3
5,277,229 + +3.7
5,277,230 - +1.2
5,277,230 - +2.2
5,277,270 + -1.7
5,277,384 - -0.7
5,277,546 + -1.2
5,277,547 - -1.3
5,277,573 - +0.8
5,277,586 + +1.1
5,277,599 + +1.8
5,277,601 + +2.8
5,277,602 - -0.0
5,277,602 - -1.2
5,277,602 - +3.8
5,277,841 + Psyr_4414 0.16 +0.2
5,277,841 + Psyr_4414 0.16 +3.4
5,277,842 - Psyr_4414 0.16 -1.2
5,277,842 - Psyr_4414 0.16 +2.5
5,278,225 + Psyr_4414 0.39 +1.2
5,278,225 + Psyr_4414 0.39 -1.7
5,278,225 + Psyr_4414 0.39 +2.5
5,278,226 - Psyr_4414 0.39 +1.0
5,278,226 - Psyr_4414 0.39 +2.2
5,278,226 - Psyr_4414 0.39 +1.8
5,278,643 + Psyr_4414 0.63 +3.2
5,278,643 + Psyr_4414 0.63 +0.5
5,278,643 + Psyr_4414 0.63 +1.8
5,278,643 + Psyr_4414 0.63 +0.5
5,278,644 - Psyr_4414 0.63 -1.4
5,278,644 - Psyr_4414 0.63 -0.8
5,278,652 - Psyr_4414 0.64 +3.7
5,278,652 - Psyr_4414 0.64 +3.5
5,278,652 - Psyr_4414 0.64 +2.2
5,279,101 + +2.8
5,279,102 - -1.2
5,279,102 - +4.2
5,279,134 + +2.2
5,279,134 + -0.6
5,279,135 - +3.0
5,279,135 - -2.0
5,279,135 - +0.7
5,279,135 - +0.2
5,279,297 - -2.2
5,279,382 + Psyr_4415 0.16 -0.8
5,279,382 + Psyr_4415 0.16 -0.2
5,279,382 + Psyr_4415 0.16 +0.5
5,279,382 + Psyr_4415 0.16 +3.5
5,279,382 + Psyr_4415 0.16 +0.8
5,279,383 - Psyr_4415 0.16 -0.1
5,279,383 - Psyr_4415 0.16 +3.0
5,279,616 + Psyr_4415 0.47 -0.2
5,279,617 - Psyr_4415 0.48 -1.4
5,279,617 - Psyr_4415 0.48 +3.0
5,279,617 - Psyr_4415 0.48 -3.0
5,279,643 + Psyr_4415 0.51 -0.2
5,279,643 + Psyr_4415 0.51 +2.2
5,279,643 + Psyr_4415 0.51 -1.1
5,279,643 + Psyr_4415 0.51 -0.1
5,279,643 + Psyr_4415 0.51 -1.7
5,279,643 + Psyr_4415 0.51 +0.2
5,279,643 + Psyr_4415 0.51 +4.4
5,279,643 + Psyr_4415 0.51 -3.8
5,279,644 - Psyr_4415 0.51 -1.6
5,279,644 - Psyr_4415 0.51 -0.6
5,279,644 - Psyr_4415 0.51 -1.2
5,279,644 - Psyr_4415 0.51 -2.1
5,279,649 + Psyr_4415 0.52 -2.3
5,279,649 + Psyr_4415 0.52 -2.3
5,279,649 + Psyr_4415 0.52 -1.5
5,279,649 + Psyr_4415 0.52 -0.3
5,279,649 + Psyr_4415 0.52 -0.1
5,279,649 + Psyr_4415 0.52 -2.0
5,279,649 + Psyr_4415 0.52 +2.2
5,279,650 - Psyr_4415 0.52 -1.0
5,279,650 - Psyr_4415 0.52 -1.0
5,279,650 - Psyr_4415 0.52 +3.7
5,279,650 - Psyr_4415 0.52 +3.0
5,279,650 - Psyr_4415 0.52 -0.8
5,279,650 - Psyr_4415 0.52 +2.5
5,279,650 - Psyr_4415 0.52 -1.4
5,279,650 - Psyr_4415 0.52 +2.2
5,279,650 - Psyr_4415 0.52 +1.8
5,279,650 - Psyr_4415 0.52 +3.5
5,279,650 - Psyr_4415 0.52 -3.1
5,279,659 - Psyr_4415 0.53 +0.8
5,279,743 - Psyr_4415 0.65 +1.2
5,279,743 - Psyr_4415 0.65 -2.6
5,279,743 - Psyr_4415 0.65 +0.6
5,279,875 + Psyr_4415 0.83 -2.6
5,279,892 + Psyr_4415 0.85 -0.9
5,279,892 + Psyr_4415 0.85 +3.2
5,279,892 + Psyr_4415 0.85 +1.2
5,279,893 - Psyr_4415 0.85 -3.3
5,279,893 - Psyr_4415 0.85 +1.8
5,279,893 - Psyr_4415 0.85 +3.8
5,280,200 + Psyr_4416 0.32 -0.9
5,280,200 + Psyr_4416 0.32 -1.0
5,280,201 - Psyr_4416 0.32 +3.5
5,280,201 - Psyr_4416 0.32 -2.8
5,280,235 + Psyr_4416 0.38 -2.9
5,280,235 + Psyr_4416 0.38 -0.9
5,280,236 - Psyr_4416 0.38 -1.4
5,280,236 - Psyr_4416 0.38 -1.1

Or see this region's nucleotide sequence