Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4413

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4411 and Psyr_4412 overlap by 8 nucleotidesPsyr_4412 and Psyr_4413 are separated by 58 nucleotidesPsyr_4413 and Psyr_4414 are separated by 348 nucleotides Psyr_4411: Psyr_4411 - conserved hypothetical protein, at 5,275,015 to 5,275,650 _4411 Psyr_4412: Psyr_4412 - conserved hypothetical protein, at 5,275,643 to 5,276,341 _4412 Psyr_4413: Psyr_4413 - conserved hypothetical protein, at 5,276,400 to 5,277,215 _4413 Psyr_4414: Psyr_4414 - precorrin-3 methyltransferase, at 5,277,564 to 5,279,267 _4414 Position (kb) 5276 5277 5278Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 5275.565 kb on - strand, within Psyr_4411at 5275.565 kb on - strand, within Psyr_4411at 5275.731 kb on + strand, within Psyr_4412at 5275.732 kb on - strand, within Psyr_4412at 5275.732 kb on - strand, within Psyr_4412at 5275.782 kb on + strand, within Psyr_4412at 5275.782 kb on + strand, within Psyr_4412at 5275.782 kb on + strand, within Psyr_4412at 5275.786 kb on + strand, within Psyr_4412at 5275.786 kb on + strand, within Psyr_4412at 5275.786 kb on + strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.787 kb on - strand, within Psyr_4412at 5275.947 kb on - strand, within Psyr_4412at 5275.947 kb on - strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.235 kb on + strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.236 kb on - strand, within Psyr_4412at 5276.373 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.380 kb on + strandat 5276.381 kb on - strandat 5276.381 kb on - strandat 5276.381 kb on - strandat 5276.476 kb on + strandat 5276.477 kb on - strandat 5276.477 kb on - strandat 5276.477 kb on - strandat 5276.784 kb on - strand, within Psyr_4413at 5276.784 kb on - strand, within Psyr_4413at 5276.857 kb on + strand, within Psyr_4413at 5276.857 kb on + strand, within Psyr_4413at 5276.858 kb on - strand, within Psyr_4413at 5276.858 kb on - strand, within Psyr_4413at 5276.914 kb on + strand, within Psyr_4413at 5276.914 kb on + strand, within Psyr_4413at 5276.915 kb on - strand, within Psyr_4413at 5277.014 kb on + strand, within Psyr_4413at 5277.100 kb on - strand, within Psyr_4413at 5277.125 kb on - strand, within Psyr_4413at 5277.173 kb on - strandat 5277.173 kb on - strandat 5277.173 kb on - strandat 5277.173 kb on - strandat 5277.221 kb on + strandat 5277.229 kb on + strandat 5277.230 kb on - strandat 5277.230 kb on - strandat 5277.270 kb on + strandat 5277.384 kb on - strandat 5277.546 kb on + strandat 5277.547 kb on - strandat 5277.573 kb on - strandat 5277.586 kb on + strandat 5277.599 kb on + strandat 5277.601 kb on + strandat 5277.602 kb on - strandat 5277.602 kb on - strandat 5277.602 kb on - strandat 5277.841 kb on + strand, within Psyr_4414at 5277.841 kb on + strand, within Psyr_4414at 5277.842 kb on - strand, within Psyr_4414at 5277.842 kb on - strand, within Psyr_4414

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
5,275,565 - Psyr_4411 0.86 +2.2
5,275,565 - Psyr_4411 0.86 +0.2
5,275,731 + Psyr_4412 0.13 -0.7
5,275,732 - Psyr_4412 0.13 +0.6
5,275,732 - Psyr_4412 0.13 +3.9
5,275,782 + Psyr_4412 0.20 +3.0
5,275,782 + Psyr_4412 0.20 -1.6
5,275,782 + Psyr_4412 0.20 +0.2
5,275,786 + Psyr_4412 0.20 +2.2
5,275,786 + Psyr_4412 0.20 -0.3
5,275,786 + Psyr_4412 0.20 -0.2
5,275,787 - Psyr_4412 0.21 +3.0
5,275,787 - Psyr_4412 0.21 -1.2
5,275,787 - Psyr_4412 0.21 -0.9
5,275,787 - Psyr_4412 0.21 +1.6
5,275,787 - Psyr_4412 0.21 +1.5
5,275,947 - Psyr_4412 0.43 -0.9
5,275,947 - Psyr_4412 0.43 -1.3
5,276,235 + Psyr_4412 0.85 -1.4
5,276,235 + Psyr_4412 0.85 +4.2
5,276,235 + Psyr_4412 0.85 +1.2
5,276,235 + Psyr_4412 0.85 -1.5
5,276,235 + Psyr_4412 0.85 +0.3
5,276,235 + Psyr_4412 0.85 -2.7
5,276,235 + Psyr_4412 0.85 -1.2
5,276,235 + Psyr_4412 0.85 +1.2
5,276,235 + Psyr_4412 0.85 +2.2
5,276,236 - Psyr_4412 0.85 -0.3
5,276,236 - Psyr_4412 0.85 +0.9
5,276,236 - Psyr_4412 0.85 -0.8
5,276,236 - Psyr_4412 0.85 +0.1
5,276,236 - Psyr_4412 0.85 +3.4
5,276,236 - Psyr_4412 0.85 -0.5
5,276,236 - Psyr_4412 0.85 -0.8
5,276,236 - Psyr_4412 0.85 -2.0
5,276,373 + +1.8
5,276,380 + -2.4
5,276,380 + +5.1
5,276,380 + +2.8
5,276,380 + -2.3
5,276,380 + -1.0
5,276,380 + -1.6
5,276,381 - -1.1
5,276,381 - -0.2
5,276,381 - +1.0
5,276,476 + +4.1
5,276,477 - +0.4
5,276,477 - -2.0
5,276,477 - -0.2
5,276,784 - Psyr_4413 0.47 -0.2
5,276,784 - Psyr_4413 0.47 +1.5
5,276,857 + Psyr_4413 0.56 +2.8
5,276,857 + Psyr_4413 0.56 +3.5
5,276,858 - Psyr_4413 0.56 -0.3
5,276,858 - Psyr_4413 0.56 +3.4
5,276,914 + Psyr_4413 0.63 -0.9
5,276,914 + Psyr_4413 0.63 +3.2
5,276,915 - Psyr_4413 0.63 -1.8
5,277,014 + Psyr_4413 0.75 -1.9
5,277,100 - Psyr_4413 0.86 +0.1
5,277,125 - Psyr_4413 0.89 -0.3
5,277,173 - +1.0
5,277,173 - +2.4
5,277,173 - +2.8
5,277,173 - -0.4
5,277,221 + -1.3
5,277,229 + +3.7
5,277,230 - +1.2
5,277,230 - +2.2
5,277,270 + -1.7
5,277,384 - -0.7
5,277,546 + -1.2
5,277,547 - -1.3
5,277,573 - +0.8
5,277,586 + +1.1
5,277,599 + +1.8
5,277,601 + +2.8
5,277,602 - -0.0
5,277,602 - -1.2
5,277,602 - +3.8
5,277,841 + Psyr_4414 0.16 +0.2
5,277,841 + Psyr_4414 0.16 +3.4
5,277,842 - Psyr_4414 0.16 -1.2
5,277,842 - Psyr_4414 0.16 +2.5

Or see this region's nucleotide sequence