Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4381 and Psyr_4382 are separated by 255 nucleotides Psyr_4382 and Psyr_4383 are separated by 80 nucleotides Psyr_4383 and Psyr_4384 overlap by 7 nucleotides
Psyr_4381: Psyr_4381 - arginine decarboxylase, at 5,236,745 to 5,238,658
_4381
Psyr_4382: Psyr_4382 - Uncharacterized protein conserved in bacteria-like protein, at 5,238,914 to 5,240,023
_4382
Psyr_4383: Psyr_4383 - esterase/lipase/thioesterase family protein, at 5,240,104 to 5,241,006
_4383
Psyr_4384: Psyr_4384 - Multi antimicrobial extrusion protein MatE, at 5,241,000 to 5,242,340
_4384
Position (kb) 5238
5239
5240
5241 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5237.945 kb on + strand, within Psyr_4381 at 5237.945 kb on + strand, within Psyr_4381 at 5237.945 kb on + strand, within Psyr_4381 at 5237.946 kb on - strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.963 kb on + strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5237.964 kb on - strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.038 kb on + strand, within Psyr_4381 at 5238.039 kb on - strand, within Psyr_4381 at 5238.039 kb on - strand, within Psyr_4381 at 5238.039 kb on - strand, within Psyr_4381 at 5238.062 kb on + strand, within Psyr_4381 at 5238.062 kb on + strand, within Psyr_4381 at 5238.062 kb on + strand, within Psyr_4381 at 5238.063 kb on - strand, within Psyr_4381 at 5238.063 kb on - strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.137 kb on + strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.138 kb on - strand, within Psyr_4381 at 5238.293 kb on + strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.294 kb on - strand, within Psyr_4381 at 5238.356 kb on + strand, within Psyr_4381 at 5238.356 kb on + strand, within Psyr_4381 at 5238.357 kb on - strand, within Psyr_4381 at 5238.446 kb on + strand, within Psyr_4381 at 5238.447 kb on - strand, within Psyr_4381 at 5238.447 kb on - strand, within Psyr_4381 at 5238.447 kb on - strand, within Psyr_4381 at 5238.519 kb on - strand at 5238.519 kb on - strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.602 kb on + strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.603 kb on - strand at 5238.644 kb on + strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.679 kb on + strand at 5238.680 kb on - strand at 5238.680 kb on - strand at 5238.680 kb on - strand at 5238.680 kb on - strand at 5238.783 kb on + strand at 5238.783 kb on + strand at 5238.784 kb on - strand at 5238.784 kb on - strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.801 kb on + strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.802 kb on - strand at 5238.825 kb on - strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.841 kb on + strand at 5238.842 kb on - strand at 5238.842 kb on - strand at 5238.842 kb on - strand at 5238.842 kb on - strand at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.079 kb on + strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.080 kb on - strand, within Psyr_4382 at 5239.190 kb on + strand, within Psyr_4382 at 5239.230 kb on + strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.246 kb on + strand, within Psyr_4382 at 5239.247 kb on - strand, within Psyr_4382 at 5239.939 kb on - strand at 5240.026 kb on + strand at 5240.027 kb on - strand at 5240.082 kb on + strand at 5240.082 kb on + strand at 5240.082 kb on + strand at 5240.082 kb on + strand at 5240.083 kb on - strand at 5240.083 kb on - strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.187 kb on + strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.188 kb on - strand at 5240.221 kb on + strand, within Psyr_4383 at 5240.222 kb on - strand, within Psyr_4383 at 5240.222 kb on - strand, within Psyr_4383 at 5240.222 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.251 kb on - strand, within Psyr_4383 at 5240.253 kb on + strand, within Psyr_4383 at 5240.253 kb on + strand, within Psyr_4383 at 5240.254 kb on - strand, within Psyr_4383 at 5240.254 kb on - strand, within Psyr_4383 at 5240.254 kb on - strand, within Psyr_4383 at 5240.266 kb on + strand, within Psyr_4383 at 5240.315 kb on - strand, within Psyr_4383 at 5240.417 kb on - strand, within Psyr_4383 at 5240.426 kb on + strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.427 kb on - strand, within Psyr_4383 at 5240.495 kb on - strand, within Psyr_4383 at 5240.545 kb on + strand, within Psyr_4383 at 5240.546 kb on - strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383 at 5240.854 kb on + strand, within Psyr_4383
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,237,945 + Psyr_4381 0.63 -1.4 5,237,945 + Psyr_4381 0.63 +1.8 5,237,945 + Psyr_4381 0.63 -1.5 5,237,946 - Psyr_4381 0.63 +0.8 5,237,963 + Psyr_4381 0.64 +3.0 5,237,963 + Psyr_4381 0.64 +1.8 5,237,963 + Psyr_4381 0.64 +3.7 5,237,963 + Psyr_4381 0.64 +0.2 5,237,963 + Psyr_4381 0.64 -2.0 5,237,963 + Psyr_4381 0.64 -1.2 5,237,963 + Psyr_4381 0.64 -3.0 5,237,963 + Psyr_4381 0.64 -1.1 5,237,964 - Psyr_4381 0.64 -0.8 5,237,964 - Psyr_4381 0.64 +3.4 5,237,964 - Psyr_4381 0.64 -2.0 5,237,964 - Psyr_4381 0.64 +2.5 5,237,964 - Psyr_4381 0.64 +0.2 5,237,964 - Psyr_4381 0.64 +1.8 5,237,964 - Psyr_4381 0.64 +2.5 5,237,964 - Psyr_4381 0.64 -1.2 5,237,964 - Psyr_4381 0.64 +3.5 5,237,964 - Psyr_4381 0.64 +3.8 5,237,964 - Psyr_4381 0.64 +2.2 5,237,964 - Psyr_4381 0.64 -4.4 5,238,038 + Psyr_4381 0.68 +3.9 5,238,038 + Psyr_4381 0.68 +1.2 5,238,038 + Psyr_4381 0.68 -4.1 5,238,038 + Psyr_4381 0.68 +3.4 5,238,038 + Psyr_4381 0.68 -1.3 5,238,039 - Psyr_4381 0.68 +0.7 5,238,039 - Psyr_4381 0.68 -0.1 5,238,039 - Psyr_4381 0.68 -0.7 5,238,062 + Psyr_4381 0.69 +1.2 5,238,062 + Psyr_4381 0.69 -3.7 5,238,062 + Psyr_4381 0.69 -1.0 5,238,063 - Psyr_4381 0.69 -4.0 5,238,063 - Psyr_4381 0.69 -1.3 5,238,137 + Psyr_4381 0.73 -0.0 5,238,137 + Psyr_4381 0.73 +3.5 5,238,137 + Psyr_4381 0.73 +0.4 5,238,137 + Psyr_4381 0.73 +1.8 5,238,137 + Psyr_4381 0.73 -0.0 5,238,137 + Psyr_4381 0.73 +0.7 5,238,137 + Psyr_4381 0.73 +3.9 5,238,137 + Psyr_4381 0.73 +1.5 5,238,137 + Psyr_4381 0.73 +3.4 5,238,137 + Psyr_4381 0.73 -2.6 5,238,137 + Psyr_4381 0.73 -2.5 5,238,138 - Psyr_4381 0.73 +0.9 5,238,138 - Psyr_4381 0.73 -1.9 5,238,138 - Psyr_4381 0.73 -1.1 5,238,138 - Psyr_4381 0.73 -0.4 5,238,138 - Psyr_4381 0.73 +4.3 5,238,138 - Psyr_4381 0.73 -0.9 5,238,138 - Psyr_4381 0.73 -1.8 5,238,138 - Psyr_4381 0.73 -1.4 5,238,138 - Psyr_4381 0.73 +2.5 5,238,138 - Psyr_4381 0.73 -1.6 5,238,138 - Psyr_4381 0.73 -3.4 5,238,138 - Psyr_4381 0.73 +3.9 5,238,293 + Psyr_4381 0.81 +3.5 5,238,294 - Psyr_4381 0.81 -0.2 5,238,294 - Psyr_4381 0.81 +3.0 5,238,294 - Psyr_4381 0.81 +0.3 5,238,294 - Psyr_4381 0.81 +2.2 5,238,294 - Psyr_4381 0.81 +1.8 5,238,356 + Psyr_4381 0.84 -2.3 5,238,356 + Psyr_4381 0.84 -3.5 5,238,357 - Psyr_4381 0.84 +0.3 5,238,446 + Psyr_4381 0.89 -1.0 5,238,447 - Psyr_4381 0.89 -1.4 5,238,447 - Psyr_4381 0.89 -1.1 5,238,447 - Psyr_4381 0.89 -1.9 5,238,519 - +4.1 5,238,519 - +2.8 5,238,602 + -0.5 5,238,602 + +2.8 5,238,602 + -0.5 5,238,602 + -0.8 5,238,602 + +3.2 5,238,603 - -1.5 5,238,603 - +2.0 5,238,603 - -1.4 5,238,603 - -0.6 5,238,644 + +3.4 5,238,679 + +2.8 5,238,679 + +1.0 5,238,679 + -0.0 5,238,680 - -0.7 5,238,680 - +2.2 5,238,680 - +2.2 5,238,680 - -1.3 5,238,783 + -0.1 5,238,783 + -1.1 5,238,784 - +3.4 5,238,784 - +1.2 5,238,801 + -0.7 5,238,801 + -1.0 5,238,801 + -1.4 5,238,801 + -0.6 5,238,801 + -1.1 5,238,801 + -1.6 5,238,802 - +4.1 5,238,802 - +4.5 5,238,802 - +0.0 5,238,802 - -1.5 5,238,825 - -1.7 5,238,841 + +3.1 5,238,841 + +3.0 5,238,841 + -1.6 5,238,841 + -2.1 5,238,841 + -1.3 5,238,842 - -0.9 5,238,842 - -0.9 5,238,842 - +2.5 5,238,842 - -2.4 5,239,079 + Psyr_4382 0.15 +1.6 5,239,079 + Psyr_4382 0.15 +3.4 5,239,079 + Psyr_4382 0.15 +0.2 5,239,079 + Psyr_4382 0.15 +3.8 5,239,079 + Psyr_4382 0.15 -1.4 5,239,079 + Psyr_4382 0.15 -1.8 5,239,079 + Psyr_4382 0.15 +3.7 5,239,080 - Psyr_4382 0.15 -2.8 5,239,080 - Psyr_4382 0.15 +2.2 5,239,080 - Psyr_4382 0.15 +1.3 5,239,190 + Psyr_4382 0.25 -1.2 5,239,230 + Psyr_4382 0.28 +2.2 5,239,246 + Psyr_4382 0.30 -2.0 5,239,246 + Psyr_4382 0.30 +4.4 5,239,246 + Psyr_4382 0.30 -4.8 5,239,247 - Psyr_4382 0.30 +4.0 5,239,939 - +1.2 5,240,026 + -1.9 5,240,027 - +1.8 5,240,082 + -1.2 5,240,082 + +1.2 5,240,082 + -0.9 5,240,082 + -1.3 5,240,083 - +3.4 5,240,083 - +3.0 5,240,187 + +1.9 5,240,187 + -0.4 5,240,187 + +1.8 5,240,187 + -0.4 5,240,187 + +0.5 5,240,187 + +3.8 5,240,187 + -2.2 5,240,188 - +3.4 5,240,188 - +1.1 5,240,188 - -1.6 5,240,188 - +4.7 5,240,221 + Psyr_4383 0.13 -1.7 5,240,222 - Psyr_4383 0.13 -1.3 5,240,222 - Psyr_4383 0.13 +2.8 5,240,222 - Psyr_4383 0.13 -2.2 5,240,251 - Psyr_4383 0.16 +3.2 5,240,251 - Psyr_4383 0.16 -1.5 5,240,251 - Psyr_4383 0.16 +1.8 5,240,251 - Psyr_4383 0.16 +2.2 5,240,251 - Psyr_4383 0.16 -1.2 5,240,253 + Psyr_4383 0.17 -1.2 5,240,253 + Psyr_4383 0.17 -1.9 5,240,254 - Psyr_4383 0.17 +2.8 5,240,254 - Psyr_4383 0.17 +3.8 5,240,254 - Psyr_4383 0.17 +1.8 5,240,266 + Psyr_4383 0.18 +2.2 5,240,315 - Psyr_4383 0.23 -0.9 5,240,417 - Psyr_4383 0.35 -0.4 5,240,426 + Psyr_4383 0.36 -0.9 5,240,427 - Psyr_4383 0.36 +3.5 5,240,427 - Psyr_4383 0.36 -1.3 5,240,427 - Psyr_4383 0.36 +4.4 5,240,427 - Psyr_4383 0.36 -2.0 5,240,495 - Psyr_4383 0.43 +3.2 5,240,545 + Psyr_4383 0.49 -0.9 5,240,546 - Psyr_4383 0.49 +2.8 5,240,854 + Psyr_4383 0.83 -0.3 5,240,854 + Psyr_4383 0.83 +0.9 5,240,854 + Psyr_4383 0.83 +3.5 5,240,854 + Psyr_4383 0.83 -2.3
Or see this region's nucleotide sequence