Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4340 and Psyr_4341 are separated by 23 nucleotides Psyr_4341 and Psyr_4342 are separated by 271 nucleotides
Psyr_4340: Psyr_4340 - phosphomethylpyrimidine kinase, putative, at 5,193,951 to 5,194,748
_4340
Psyr_4341: Psyr_4341 - thiamine-phosphate diphosphorylase, at 5,194,772 to 5,195,389
_4341
Psyr_4342: Psyr_4342 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,195,661 to 5,196,944
_4342
Position (kb) 5194
5195
5196 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5193.804 kb on + strand at 5193.804 kb on + strand at 5193.804 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.840 kb on - strand at 5193.932 kb on - strand at 5193.938 kb on - strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.957 kb on - strand at 5193.957 kb on - strand at 5193.957 kb on - strand at 5193.957 kb on - strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.962 kb on + strand at 5193.962 kb on + strand at 5193.963 kb on - strand at 5193.976 kb on + strand at 5193.976 kb on + strand at 5194.004 kb on + strand at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.085 kb on + strand, within Psyr_4340 at 5194.180 kb on + strand, within Psyr_4340 at 5194.180 kb on + strand, within Psyr_4340 at 5194.180 kb on + strand, within Psyr_4340 at 5194.180 kb on + strand, within Psyr_4340 at 5194.181 kb on - strand, within Psyr_4340 at 5194.286 kb on - strand, within Psyr_4340 at 5194.419 kb on - strand, within Psyr_4340 at 5194.444 kb on + strand, within Psyr_4340 at 5194.445 kb on - strand, within Psyr_4340 at 5194.461 kb on + strand, within Psyr_4340 at 5194.461 kb on + strand, within Psyr_4340 at 5194.462 kb on - strand, within Psyr_4340 at 5194.515 kb on + strand, within Psyr_4340 at 5194.515 kb on + strand, within Psyr_4340 at 5194.515 kb on + strand, within Psyr_4340 at 5194.569 kb on + strand, within Psyr_4340 at 5194.569 kb on + strand, within Psyr_4340 at 5194.569 kb on + strand, within Psyr_4340 at 5194.570 kb on - strand, within Psyr_4340 at 5194.570 kb on - strand, within Psyr_4340 at 5194.570 kb on - strand, within Psyr_4340 at 5194.662 kb on + strand, within Psyr_4340 at 5194.663 kb on - strand, within Psyr_4340 at 5194.746 kb on + strand at 5194.746 kb on + strand at 5194.790 kb on + strand at 5194.791 kb on - strand at 5194.791 kb on - strand at 5194.835 kb on + strand, within Psyr_4341 at 5194.835 kb on + strand, within Psyr_4341 at 5194.835 kb on + strand, within Psyr_4341 at 5194.835 kb on + strand, within Psyr_4341 at 5194.836 kb on - strand, within Psyr_4341 at 5194.836 kb on - strand, within Psyr_4341 at 5194.836 kb on - strand, within Psyr_4341 at 5194.836 kb on - strand, within Psyr_4341 at 5194.877 kb on + strand, within Psyr_4341 at 5194.878 kb on - strand, within Psyr_4341 at 5194.950 kb on - strand, within Psyr_4341 at 5195.083 kb on + strand, within Psyr_4341 at 5195.083 kb on + strand, within Psyr_4341 at 5195.084 kb on - strand, within Psyr_4341 at 5195.084 kb on - strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.342 kb on - strand at 5195.342 kb on - strand at 5195.387 kb on + strand at 5195.388 kb on - strand at 5195.397 kb on + strand at 5195.397 kb on + strand at 5195.398 kb on - strand at 5195.398 kb on - strand at 5195.450 kb on + strand at 5195.451 kb on - strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.536 kb on - strand at 5195.536 kb on - strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.579 kb on - strand at 5195.623 kb on + strand at 5195.623 kb on + strand at 5195.623 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,193,804 + -0.9 5,193,804 + -1.5 5,193,804 + -0.7 5,193,810 + -1.9 5,193,810 + +1.3 5,193,810 + +0.7 5,193,810 + -0.1 5,193,810 + -0.6 5,193,810 + +4.1 5,193,810 + +3.3 5,193,810 + +2.4 5,193,810 + +0.6 5,193,811 - +2.5 5,193,811 - +3.2 5,193,811 - -0.9 5,193,811 - +3.2 5,193,811 - -2.2 5,193,811 - +2.5 5,193,840 - -1.5 5,193,932 - +3.6 5,193,938 - -0.9 5,193,956 + +0.2 5,193,956 + -3.6 5,193,956 + +1.4 5,193,956 + +1.7 5,193,956 + -1.9 5,193,956 + -4.0 5,193,956 + +2.2 5,193,956 + -3.8 5,193,956 + +0.2 5,193,957 - -4.2 5,193,957 - -3.7 5,193,957 - +0.2 5,193,957 - -3.8 5,193,960 + +0.2 5,193,960 + +2.7 5,193,960 + -3.5 5,193,960 + +1.2 5,193,960 + +3.5 5,193,960 + -0.2 5,193,960 + -0.4 5,193,960 + +0.4 5,193,960 + +1.2 5,193,960 + +3.0 5,193,960 + -2.7 5,193,960 + +1.3 5,193,960 + +2.7 5,193,960 + +0.2 5,193,960 + -0.3 5,193,960 + -3.3 5,193,960 + -0.8 5,193,960 + -0.8 5,193,960 + +0.6 5,193,960 + -3.6 5,193,960 + +2.2 5,193,960 + -1.7 5,193,960 + +1.6 5,193,960 + -1.4 5,193,960 + -1.1 5,193,960 + +1.7 5,193,960 + +0.2 5,193,960 + +3.6 5,193,960 + +3.9 5,193,960 + +3.0 5,193,961 - +0.2 5,193,961 - -3.9 5,193,961 - -4.8 5,193,961 - -3.8 5,193,961 - -2.8 5,193,961 - -4.6 5,193,961 - -3.7 5,193,961 - +0.2 5,193,961 - +0.2 5,193,961 - +0.2 5,193,961 - -3.4 5,193,961 - -2.0 5,193,961 - -3.3 5,193,961 - -3.8 5,193,962 + +2.2 5,193,962 + -5.4 5,193,963 - -1.4 5,193,976 + +0.2 5,193,976 + +0.2 5,194,004 + -3.7 5,194,033 + Psyr_4340 0.10 +0.2 5,194,033 + Psyr_4340 0.10 +0.2 5,194,033 + Psyr_4340 0.10 +0.2 5,194,033 + Psyr_4340 0.10 +0.2 5,194,033 + Psyr_4340 0.10 -3.2 5,194,033 + Psyr_4340 0.10 +0.2 5,194,033 + Psyr_4340 0.10 +0.2 5,194,033 + Psyr_4340 0.10 -2.2 5,194,033 + Psyr_4340 0.10 -1.2 5,194,033 + Psyr_4340 0.10 -3.7 5,194,033 + Psyr_4340 0.10 -4.2 5,194,034 - Psyr_4340 0.10 +0.2 5,194,034 - Psyr_4340 0.10 -3.7 5,194,034 - +0.2 5,194,034 - Psyr_4340 0.10 -3.4 5,194,034 - Psyr_4340 0.10 -4.7 5,194,034 - Psyr_4340 0.10 -3.2 5,194,034 - Psyr_4340 0.10 +0.2 5,194,034 - Psyr_4340 0.10 -3.6 5,194,034 - Psyr_4340 0.10 -3.4 5,194,034 - Psyr_4340 0.10 -2.6 5,194,034 - Psyr_4340 0.10 -1.1 5,194,085 + Psyr_4340 0.17 -4.8 5,194,180 + Psyr_4340 0.29 -3.8 5,194,180 + Psyr_4340 0.29 +0.2 5,194,180 + Psyr_4340 0.29 -4.0 5,194,180 + Psyr_4340 0.29 +0.2 5,194,181 - Psyr_4340 0.29 +0.2 5,194,286 - Psyr_4340 0.42 +0.2 5,194,419 - Psyr_4340 0.59 -3.5 5,194,444 + Psyr_4340 0.62 +0.2 5,194,445 - Psyr_4340 0.62 -4.3 5,194,461 + Psyr_4340 0.64 +0.2 5,194,461 + Psyr_4340 0.64 +0.2 5,194,462 - Psyr_4340 0.64 +0.2 5,194,515 + Psyr_4340 0.71 -4.0 5,194,515 + Psyr_4340 0.71 -5.3 5,194,515 + Psyr_4340 0.71 +0.2 5,194,569 + Psyr_4340 0.77 -2.8 5,194,569 + Psyr_4340 0.77 +3.0 5,194,569 + Psyr_4340 0.77 -4.4 5,194,570 - Psyr_4340 0.78 +0.2 5,194,570 - Psyr_4340 0.78 +0.2 5,194,570 - Psyr_4340 0.78 -4.1 5,194,662 + Psyr_4340 0.89 -4.8 5,194,663 - Psyr_4340 0.89 +0.2 5,194,746 + -1.4 5,194,746 + +1.9 5,194,790 + +1.8 5,194,791 - -4.3 5,194,791 - +1.2 5,194,835 + Psyr_4341 0.10 -3.4 5,194,835 + Psyr_4341 0.10 -3.9 5,194,835 + Psyr_4341 0.10 +0.2 5,194,835 + Psyr_4341 0.10 -0.8 5,194,836 - Psyr_4341 0.10 +0.2 5,194,836 - Psyr_4341 0.10 -4.6 5,194,836 - Psyr_4341 0.10 -2.0 5,194,836 - Psyr_4341 0.10 -1.6 5,194,877 + Psyr_4341 0.17 -2.4 5,194,878 - Psyr_4341 0.17 +0.2 5,194,950 - Psyr_4341 0.29 -2.4 5,195,083 + Psyr_4341 0.50 +0.2 5,195,083 + Psyr_4341 0.50 -2.6 5,195,084 - Psyr_4341 0.50 +0.2 5,195,084 - Psyr_4341 0.50 -3.6 5,195,138 + Psyr_4341 0.59 +1.2 5,195,138 + Psyr_4341 0.59 -4.1 5,195,138 + Psyr_4341 0.59 -3.8 5,195,138 + Psyr_4341 0.59 +0.2 5,195,138 + Psyr_4341 0.59 -2.1 5,195,138 + Psyr_4341 0.59 +3.3 5,195,139 - Psyr_4341 0.59 +0.2 5,195,139 - Psyr_4341 0.59 -5.2 5,195,139 - Psyr_4341 0.59 -4.1 5,195,139 - Psyr_4341 0.59 +0.2 5,195,139 - Psyr_4341 0.59 +0.2 5,195,139 - Psyr_4341 0.59 +0.2 5,195,139 - Psyr_4341 0.59 -4.3 5,195,342 - -2.5 5,195,342 - -3.5 5,195,387 + -1.2 5,195,388 - +4.6 5,195,397 + -2.1 5,195,397 + +2.2 5,195,398 - +2.5 5,195,398 - -0.4 5,195,450 + -1.1 5,195,451 - -2.0 5,195,535 + +0.4 5,195,535 + +3.2 5,195,535 + -3.4 5,195,535 + -2.1 5,195,535 + +3.2 5,195,536 - +3.2 5,195,536 - -2.1 5,195,537 + -1.0 5,195,537 + +2.8 5,195,537 + -3.1 5,195,537 + +1.5 5,195,537 + -0.1 5,195,537 + +2.5 5,195,537 + -1.0 5,195,537 + +3.0 5,195,537 + +3.5 5,195,537 + +3.9 5,195,537 + -2.8 5,195,537 + -1.7 5,195,537 + -2.6 5,195,537 + -1.9 5,195,579 - +2.2 5,195,623 + -0.2 5,195,623 + +1.3 5,195,623 + +0.2
Or see this region's nucleotide sequence