Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4266 and Psyr_4267 are separated by 139 nucleotides Psyr_4267 and Psyr_4268 are separated by 47 nucleotides
Psyr_4266: Psyr_4266 - transcriptional regulator, LuxR family, at 5,087,439 to 5,088,431
_4266
Psyr_4267: Psyr_4267 - conserved hypothetical protein, at 5,088,571 to 5,089,464
_4267
Psyr_4268: Psyr_4268 - Amidase, at 5,089,512 to 5,090,963
_4268
Position (kb) 5088
5089
5090 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 5087.814 kb on + strand, within Psyr_4266 at 5087.815 kb on - strand, within Psyr_4266 at 5087.839 kb on + strand, within Psyr_4266 at 5087.979 kb on + strand, within Psyr_4266 at 5087.979 kb on + strand, within Psyr_4266 at 5087.980 kb on - strand, within Psyr_4266 at 5087.980 kb on - strand, within Psyr_4266 at 5087.980 kb on - strand, within Psyr_4266 at 5088.021 kb on + strand, within Psyr_4266 at 5088.022 kb on - strand, within Psyr_4266 at 5088.173 kb on + strand, within Psyr_4266 at 5088.214 kb on + strand, within Psyr_4266 at 5088.214 kb on + strand, within Psyr_4266 at 5088.214 kb on + strand, within Psyr_4266 at 5088.214 kb on + strand, within Psyr_4266 at 5088.214 kb on + strand, within Psyr_4266 at 5088.215 kb on - strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.300 kb on + strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.301 kb on - strand, within Psyr_4266 at 5088.326 kb on + strand, within Psyr_4266 at 5088.326 kb on + strand, within Psyr_4266 at 5088.327 kb on - strand, within Psyr_4266 at 5088.327 kb on - strand, within Psyr_4266 at 5088.327 kb on - strand, within Psyr_4266 at 5088.327 kb on - strand, within Psyr_4266 at 5088.327 kb on - strand, within Psyr_4266 at 5088.366 kb on + strand at 5088.366 kb on + strand at 5088.366 kb on + strand at 5088.366 kb on + strand at 5088.367 kb on - strand at 5088.409 kb on + strand at 5088.409 kb on + strand at 5088.410 kb on - strand at 5088.410 kb on - strand at 5088.410 kb on - strand at 5088.445 kb on + strand at 5088.469 kb on + strand at 5088.469 kb on + strand at 5088.512 kb on + strand at 5088.512 kb on + strand at 5088.513 kb on - strand at 5088.525 kb on - strand at 5088.537 kb on - strand at 5088.537 kb on - strand at 5088.712 kb on + strand, within Psyr_4267 at 5088.712 kb on + strand, within Psyr_4267 at 5088.712 kb on + strand, within Psyr_4267 at 5088.797 kb on - strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.010 kb on + strand, within Psyr_4267 at 5089.011 kb on - strand, within Psyr_4267 at 5089.011 kb on - strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.105 kb on + strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.106 kb on - strand, within Psyr_4267 at 5089.153 kb on - strand, within Psyr_4267 at 5089.154 kb on + strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.155 kb on - strand, within Psyr_4267 at 5089.198 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.261 kb on + strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.262 kb on - strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.348 kb on + strand, within Psyr_4267 at 5089.349 kb on - strand, within Psyr_4267 at 5089.349 kb on - strand, within Psyr_4267 at 5089.393 kb on + strand at 5089.394 kb on - strand at 5089.394 kb on - strand at 5089.429 kb on + strand at 5089.430 kb on - strand at 5089.430 kb on - strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.462 kb on + strand at 5089.463 kb on - strand at 5089.463 kb on - strand at 5089.531 kb on + strand at 5089.538 kb on + strand at 5089.669 kb on - strand, within Psyr_4268 at 5089.902 kb on + strand, within Psyr_4268 at 5089.902 kb on + strand, within Psyr_4268 at 5089.903 kb on - strand, within Psyr_4268 at 5090.315 kb on - strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.391 kb on + strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268 at 5090.392 kb on - strand, within Psyr_4268
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,087,814 + Psyr_4266 0.38 +4.7 5,087,815 - Psyr_4266 0.38 -2.5 5,087,839 + Psyr_4266 0.40 -1.2 5,087,979 + Psyr_4266 0.54 +4.2 5,087,979 + Psyr_4266 0.54 +2.5 5,087,980 - Psyr_4266 0.54 +0.2 5,087,980 - Psyr_4266 0.54 -0.1 5,087,980 - Psyr_4266 0.54 -0.7 5,088,021 + Psyr_4266 0.59 -0.1 5,088,022 - Psyr_4266 0.59 +3.5 5,088,173 + Psyr_4266 0.74 +4.7 5,088,214 + Psyr_4266 0.78 -0.5 5,088,214 + Psyr_4266 0.78 +4.3 5,088,214 + Psyr_4266 0.78 +1.7 5,088,214 + Psyr_4266 0.78 -0.7 5,088,214 + Psyr_4266 0.78 -1.8 5,088,215 - Psyr_4266 0.78 -0.2 5,088,300 + Psyr_4266 0.87 +0.2 5,088,300 + Psyr_4266 0.87 +1.7 5,088,300 + Psyr_4266 0.87 +4.2 5,088,300 + Psyr_4266 0.87 +3.0 5,088,300 + Psyr_4266 0.87 -0.8 5,088,300 + Psyr_4266 0.87 +2.5 5,088,300 + Psyr_4266 0.87 -1.7 5,088,300 + Psyr_4266 0.87 -0.5 5,088,300 + Psyr_4266 0.87 +1.7 5,088,300 + Psyr_4266 0.87 -0.5 5,088,301 - Psyr_4266 0.87 -1.2 5,088,301 - Psyr_4266 0.87 -2.3 5,088,301 - Psyr_4266 0.87 +2.2 5,088,301 - Psyr_4266 0.87 -0.2 5,088,301 - Psyr_4266 0.87 +1.0 5,088,301 - Psyr_4266 0.87 -1.6 5,088,301 - Psyr_4266 0.87 +1.4 5,088,301 - Psyr_4266 0.87 +0.1 5,088,301 - Psyr_4266 0.87 -0.1 5,088,301 - Psyr_4266 0.87 -1.4 5,088,301 - Psyr_4266 0.87 -0.8 5,088,301 - Psyr_4266 0.87 +2.2 5,088,301 - Psyr_4266 0.87 -2.4 5,088,301 - Psyr_4266 0.87 +2.5 5,088,301 - Psyr_4266 0.87 +0.5 5,088,301 - Psyr_4266 0.87 -1.5 5,088,326 + Psyr_4266 0.89 -2.2 5,088,326 + Psyr_4266 0.89 -0.4 5,088,327 - Psyr_4266 0.89 +0.2 5,088,327 - Psyr_4266 0.89 -0.5 5,088,327 - Psyr_4266 0.89 +0.2 5,088,327 - Psyr_4266 0.89 -1.9 5,088,327 - Psyr_4266 0.89 +1.7 5,088,366 + -2.7 5,088,366 + +4.1 5,088,366 + -0.8 5,088,366 + +3.3 5,088,367 - +1.2 5,088,409 + -5.3 5,088,409 + -1.2 5,088,410 - +1.7 5,088,410 - -2.6 5,088,410 - +3.0 5,088,445 + +0.2 5,088,469 + +3.5 5,088,469 + -1.7 5,088,512 + +0.4 5,088,512 + -0.1 5,088,513 - -1.5 5,088,525 - -0.4 5,088,537 - -1.5 5,088,537 - -0.1 5,088,712 + Psyr_4267 0.16 +0.2 5,088,712 + Psyr_4267 0.16 +3.2 5,088,712 + Psyr_4267 0.16 +0.2 5,088,797 - Psyr_4267 0.25 +3.7 5,089,010 + Psyr_4267 0.49 +0.6 5,089,010 + Psyr_4267 0.49 +0.4 5,089,010 + Psyr_4267 0.49 +2.2 5,089,010 + Psyr_4267 0.49 -0.5 5,089,011 - Psyr_4267 0.49 -0.9 5,089,011 - Psyr_4267 0.49 +0.4 5,089,105 + Psyr_4267 0.60 +0.0 5,089,105 + Psyr_4267 0.60 +4.0 5,089,105 + Psyr_4267 0.60 -3.5 5,089,105 + Psyr_4267 0.60 +3.9 5,089,105 + Psyr_4267 0.60 +0.0 5,089,105 + Psyr_4267 0.60 -0.1 5,089,106 - Psyr_4267 0.60 +0.0 5,089,106 - Psyr_4267 0.60 -0.5 5,089,106 - Psyr_4267 0.60 +3.5 5,089,153 - Psyr_4267 0.65 +1.1 5,089,154 + Psyr_4267 0.65 -2.0 5,089,155 - Psyr_4267 0.65 -1.1 5,089,155 - Psyr_4267 0.65 +2.2 5,089,155 - Psyr_4267 0.65 -2.1 5,089,155 - Psyr_4267 0.65 -0.1 5,089,155 - Psyr_4267 0.65 +1.7 5,089,198 + Psyr_4267 0.70 -0.8 5,089,261 + Psyr_4267 0.77 -1.2 5,089,261 + Psyr_4267 0.77 +0.1 5,089,261 + Psyr_4267 0.77 +2.2 5,089,262 - Psyr_4267 0.77 -0.6 5,089,262 - Psyr_4267 0.77 +3.6 5,089,262 - Psyr_4267 0.77 -2.3 5,089,262 - Psyr_4267 0.77 -0.3 5,089,262 - Psyr_4267 0.77 +2.1 5,089,348 + Psyr_4267 0.87 +0.4 5,089,348 + Psyr_4267 0.87 -2.4 5,089,348 + Psyr_4267 0.87 -0.4 5,089,349 - Psyr_4267 0.87 -1.5 5,089,349 - Psyr_4267 0.87 -0.4 5,089,393 + +2.7 5,089,394 - +2.5 5,089,394 - +4.1 5,089,429 + +1.2 5,089,430 - -0.2 5,089,430 - +3.5 5,089,462 + -3.8 5,089,462 + +1.5 5,089,462 + -1.4 5,089,462 + +0.3 5,089,463 - -0.3 5,089,463 - +1.2 5,089,531 + +3.1 5,089,538 + +3.5 5,089,669 - Psyr_4268 0.11 -0.4 5,089,902 + Psyr_4268 0.27 +0.9 5,089,902 + Psyr_4268 0.27 -2.4 5,089,903 - Psyr_4268 0.27 -0.7 5,090,315 - Psyr_4268 0.55 +0.3 5,090,391 + Psyr_4268 0.61 +3.3 5,090,391 + Psyr_4268 0.61 +0.2 5,090,391 + Psyr_4268 0.61 +1.3 5,090,391 + Psyr_4268 0.61 -1.7 5,090,391 + Psyr_4268 0.61 -0.2 5,090,392 - Psyr_4268 0.61 -1.9 5,090,392 - Psyr_4268 0.61 -1.3 5,090,392 - Psyr_4268 0.61 -1.7
Or see this region's nucleotide sequence