Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4239 and Psyr_4240 are separated by 10 nucleotides Psyr_4240 and Psyr_4241 are separated by 10 nucleotides Psyr_4241 and Psyr_4242 overlap by 1 nucleotides
Psyr_4239: Psyr_4239 - Binding-protein-dependent transport systems inner membrane component, at 5,051,620 to 5,052,630
_4239
Psyr_4240: Psyr_4240 - Binding-protein-dependent transport systems inner membrane component, at 5,052,641 to 5,053,552
_4240
Psyr_4241: Psyr_4241 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,053,563 to 5,054,531
_4241
Psyr_4242: Psyr_4242 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,054,531 to 5,055,505
_4242
Position (kb) 5052
5053
5054 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5051.681 kb on + strand at 5051.682 kb on - strand at 5051.806 kb on + strand, within Psyr_4239 at 5051.806 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.815 kb on + strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.816 kb on - strand, within Psyr_4239 at 5051.824 kb on + strand, within Psyr_4239 at 5051.824 kb on + strand, within Psyr_4239 at 5051.825 kb on - strand, within Psyr_4239 at 5051.825 kb on - strand, within Psyr_4239 at 5051.825 kb on - strand, within Psyr_4239 at 5052.040 kb on + strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.137 kb on - strand, within Psyr_4239 at 5052.243 kb on - strand, within Psyr_4239 at 5052.316 kb on + strand, within Psyr_4239 at 5052.316 kb on + strand, within Psyr_4239 at 5052.316 kb on + strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.317 kb on - strand, within Psyr_4239 at 5052.363 kb on - strand, within Psyr_4239 at 5052.363 kb on - strand, within Psyr_4239 at 5052.652 kb on + strand at 5052.687 kb on - strand at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.169 kb on + strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.170 kb on - strand, within Psyr_4240 at 5053.217 kb on + strand, within Psyr_4240 at 5053.217 kb on + strand, within Psyr_4240 at 5053.218 kb on - strand, within Psyr_4240 at 5053.374 kb on + strand, within Psyr_4240 at 5053.374 kb on + strand, within Psyr_4240 at 5053.424 kb on + strand, within Psyr_4240 at 5053.424 kb on + strand, within Psyr_4240 at 5053.424 kb on + strand, within Psyr_4240 at 5053.425 kb on - strand, within Psyr_4240 at 5053.425 kb on - strand, within Psyr_4240 at 5053.618 kb on + strand at 5053.663 kb on + strand, within Psyr_4241 at 5053.663 kb on + strand, within Psyr_4241 at 5053.664 kb on - strand, within Psyr_4241 at 5053.875 kb on + strand, within Psyr_4241 at 5053.875 kb on + strand, within Psyr_4241 at 5053.875 kb on + strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.876 kb on - strand, within Psyr_4241 at 5053.878 kb on - strand, within Psyr_4241 at 5054.007 kb on + strand, within Psyr_4241 at 5054.008 kb on - strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.241 kb on + strand, within Psyr_4241 at 5054.242 kb on - strand, within Psyr_4241 at 5054.242 kb on - strand, within Psyr_4241 at 5054.434 kb on - strand, within Psyr_4241 at 5054.438 kb on - strand at 5054.438 kb on - strand at 5054.438 kb on - strand at 5054.438 kb on - strand at 5054.505 kb on + strand at 5054.505 kb on + strand at 5054.505 kb on + strand at 5054.506 kb on - strand at 5054.506 kb on - strand at 5054.529 kb on + strand at 5054.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 5,051,681 + +3.2 5,051,682 - -0.8 5,051,806 + Psyr_4239 0.18 +4.1 5,051,806 + Psyr_4239 0.18 -0.2 5,051,815 + Psyr_4239 0.19 +3.0 5,051,815 + Psyr_4239 0.19 +3.5 5,051,815 + Psyr_4239 0.19 +0.9 5,051,815 + Psyr_4239 0.19 +3.6 5,051,816 - Psyr_4239 0.19 -0.4 5,051,816 - Psyr_4239 0.19 +3.9 5,051,816 - Psyr_4239 0.19 -0.2 5,051,824 + Psyr_4239 0.20 +0.2 5,051,824 + Psyr_4239 0.20 +2.8 5,051,825 - Psyr_4239 0.20 +1.2 5,051,825 - Psyr_4239 0.20 -1.3 5,051,825 - Psyr_4239 0.20 +2.2 5,052,040 + Psyr_4239 0.42 +1.4 5,052,137 - Psyr_4239 0.51 +1.2 5,052,137 - Psyr_4239 0.51 +0.8 5,052,137 - Psyr_4239 0.51 +0.3 5,052,137 - Psyr_4239 0.51 +3.5 5,052,243 - Psyr_4239 0.62 -0.5 5,052,316 + Psyr_4239 0.69 +1.4 5,052,316 + Psyr_4239 0.69 +0.4 5,052,316 + Psyr_4239 0.69 +1.8 5,052,317 - Psyr_4239 0.69 -1.5 5,052,317 - Psyr_4239 0.69 +4.6 5,052,317 - Psyr_4239 0.69 -0.7 5,052,317 - Psyr_4239 0.69 +1.8 5,052,317 - Psyr_4239 0.69 -3.1 5,052,317 - Psyr_4239 0.69 +2.2 5,052,317 - Psyr_4239 0.69 -0.1 5,052,363 - Psyr_4239 0.73 +3.0 5,052,363 - Psyr_4239 0.73 -1.3 5,052,652 + +0.2 5,052,687 - -2.5 5,053,169 + Psyr_4240 0.58 +2.8 5,053,169 + Psyr_4240 0.58 +0.1 5,053,169 + Psyr_4240 0.58 +4.3 5,053,169 + Psyr_4240 0.58 -0.5 5,053,169 + Psyr_4240 0.58 -1.1 5,053,169 + Psyr_4240 0.58 +3.0 5,053,169 + Psyr_4240 0.58 +0.9 5,053,169 + Psyr_4240 0.58 +3.0 5,053,170 - Psyr_4240 0.58 -2.8 5,053,170 - Psyr_4240 0.58 +0.8 5,053,170 - Psyr_4240 0.58 +0.6 5,053,170 - Psyr_4240 0.58 +3.9 5,053,170 - Psyr_4240 0.58 +1.8 5,053,170 - Psyr_4240 0.58 +1.2 5,053,170 - Psyr_4240 0.58 -0.4 5,053,170 - Psyr_4240 0.58 -0.4 5,053,170 - Psyr_4240 0.58 +0.0 5,053,170 - Psyr_4240 0.58 -1.7 5,053,170 - Psyr_4240 0.58 -1.4 5,053,217 + Psyr_4240 0.63 +0.4 5,053,217 + Psyr_4240 0.63 +2.5 5,053,218 - Psyr_4240 0.63 -1.1 5,053,374 + Psyr_4240 0.80 +0.6 5,053,374 + Psyr_4240 0.80 +1.8 5,053,424 + Psyr_4240 0.86 -0.1 5,053,424 + Psyr_4240 0.86 -0.4 5,053,424 + Psyr_4240 0.86 +4.3 5,053,425 - Psyr_4240 0.86 +0.1 5,053,425 - Psyr_4240 0.86 +2.8 5,053,618 + -0.4 5,053,663 + Psyr_4241 0.10 -3.6 5,053,663 + Psyr_4241 0.10 +1.2 5,053,664 - Psyr_4241 0.10 +0.2 5,053,875 + Psyr_4241 0.32 -2.3 5,053,875 + Psyr_4241 0.32 +1.3 5,053,875 + Psyr_4241 0.32 -1.4 5,053,876 - Psyr_4241 0.32 -0.7 5,053,876 - Psyr_4241 0.32 +0.2 5,053,876 - Psyr_4241 0.32 +3.9 5,053,876 - Psyr_4241 0.32 -2.2 5,053,876 - Psyr_4241 0.32 -1.7 5,053,876 - Psyr_4241 0.32 -0.8 5,053,876 - Psyr_4241 0.32 -1.4 5,053,876 - Psyr_4241 0.32 +0.1 5,053,876 - Psyr_4241 0.32 -0.2 5,053,878 - Psyr_4241 0.33 +4.3 5,054,007 + Psyr_4241 0.46 +2.2 5,054,008 - Psyr_4241 0.46 +3.0 5,054,241 + Psyr_4241 0.70 +1.2 5,054,241 + Psyr_4241 0.70 -1.1 5,054,241 + Psyr_4241 0.70 +3.0 5,054,241 + Psyr_4241 0.70 +0.3 5,054,241 + Psyr_4241 0.70 +2.5 5,054,242 - Psyr_4241 0.70 -1.2 5,054,242 - Psyr_4241 0.70 -0.2 5,054,434 - Psyr_4241 0.90 -0.8 5,054,438 - +4.1 5,054,438 - +1.5 5,054,438 - +3.9 5,054,438 - -0.6 5,054,505 + -0.8 5,054,505 + -2.5 5,054,505 + +0.2 5,054,506 - +0.5 5,054,506 - +2.2 5,054,529 + -0.6 5,054,529 + +4.3
Or see this region's nucleotide sequence