Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4232

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4231 and Psyr_4232 are separated by 192 nucleotidesPsyr_4232 and Psyr_4233 are separated by 209 nucleotides Psyr_4231: Psyr_4231 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,038,879 to 5,040,138 _4231 Psyr_4232: Psyr_4232 - Protein of unknown function DUF541, at 5,040,331 to 5,041,044 _4232 Psyr_4233: Psyr_4233 - PhcA, at 5,041,254 to 5,042,810 _4233 Position (kb) 5040 5041 5042Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 5039.334 kb on + strand, within Psyr_4231at 5039.334 kb on + strand, within Psyr_4231at 5039.335 kb on - strand, within Psyr_4231at 5039.335 kb on - strand, within Psyr_4231at 5039.669 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.738 kb on + strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strandat 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.739 kb on - strand, within Psyr_4231at 5039.774 kb on + strandat 5039.819 kb on + strand, within Psyr_4231at 5039.819 kb on + strand, within Psyr_4231at 5039.819 kb on + strand, within Psyr_4231at 5039.820 kb on - strand, within Psyr_4231at 5039.823 kb on - strand, within Psyr_4231at 5039.858 kb on + strand, within Psyr_4231at 5039.858 kb on + strand, within Psyr_4231at 5039.858 kb on + strand, within Psyr_4231at 5039.859 kb on - strand, within Psyr_4231at 5039.859 kb on - strand, within Psyr_4231at 5039.859 kb on - strand, within Psyr_4231at 5040.178 kb on + strandat 5040.178 kb on + strandat 5040.178 kb on + strandat 5040.178 kb on + strandat 5040.178 kb on + strandat 5040.178 kb on + strandat 5040.178 kb on + strandat 5040.179 kb on - strandat 5040.179 kb on - strandat 5040.179 kb on - strandat 5040.179 kb on - strandat 5040.268 kb on - strandat 5040.484 kb on + strand, within Psyr_4232at 5040.485 kb on - strand, within Psyr_4232at 5040.485 kb on - strand, within Psyr_4232at 5040.619 kb on + strand, within Psyr_4232at 5040.619 kb on + strand, within Psyr_4232at 5040.859 kb on - strand, within Psyr_4232at 5040.865 kb on + strand, within Psyr_4232at 5040.866 kb on - strand, within Psyr_4232at 5040.866 kb on - strand, within Psyr_4232at 5040.891 kb on + strand, within Psyr_4232at 5040.891 kb on + strand, within Psyr_4232at 5040.892 kb on - strand, within Psyr_4232at 5040.913 kb on + strand, within Psyr_4232at 5040.913 kb on + strand, within Psyr_4232at 5040.913 kb on + strand, within Psyr_4232at 5041.022 kb on + strandat 5041.022 kb on + strandat 5041.023 kb on - strandat 5041.023 kb on - strandat 5041.057 kb on + strandat 5041.057 kb on + strandat 5041.061 kb on - strandat 5041.125 kb on + strandat 5041.125 kb on + strandat 5041.125 kb on + strandat 5041.125 kb on + strandat 5041.125 kb on + strandat 5041.125 kb on + strandat 5041.125 kb on + strandat 5041.126 kb on - strandat 5041.126 kb on - strandat 5041.126 kb on - strandat 5041.126 kb on - strandat 5041.313 kb on + strandat 5041.313 kb on + strandat 5041.314 kb on - strandat 5041.379 kb on + strandat 5041.380 kb on - strandat 5041.380 kb on - strandat 5041.380 kb on - strandat 5041.380 kb on - strandat 5041.380 kb on - strandat 5041.446 kb on + strand, within Psyr_4233at 5041.446 kb on + strand, within Psyr_4233at 5041.470 kb on + strand, within Psyr_4233at 5041.650 kb on + strand, within Psyr_4233at 5041.795 kb on - strand, within Psyr_4233at 5042.024 kb on + strand, within Psyr_4233at 5042.025 kb on - strand, within Psyr_4233

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
5,039,334 + Psyr_4231 0.36 -0.6
5,039,334 + Psyr_4231 0.36 +1.4
5,039,335 - Psyr_4231 0.36 +0.7
5,039,335 - Psyr_4231 0.36 +2.0
5,039,669 + Psyr_4231 0.63 +3.6
5,039,738 + Psyr_4231 0.68 +1.0
5,039,738 + Psyr_4231 0.68 -1.2
5,039,738 + Psyr_4231 0.68 +3.6
5,039,738 + Psyr_4231 0.68 +0.5
5,039,738 + Psyr_4231 0.68 +0.4
5,039,738 + Psyr_4231 0.68 +1.3
5,039,738 + Psyr_4231 0.68 +2.2
5,039,738 + Psyr_4231 0.68 -0.5
5,039,739 - Psyr_4231 0.68 +3.9
5,039,739 - Psyr_4231 0.68 +0.2
5,039,739 - Psyr_4231 0.68 +3.2
5,039,739 - Psyr_4231 0.68 +1.8
5,039,739 - Psyr_4231 0.68 +2.2
5,039,739 - +2.8
5,039,739 - Psyr_4231 0.68 -2.0
5,039,739 - Psyr_4231 0.68 -2.2
5,039,739 - Psyr_4231 0.68 -0.3
5,039,739 - Psyr_4231 0.68 -3.2
5,039,739 - Psyr_4231 0.68 +2.8
5,039,739 - Psyr_4231 0.68 +0.2
5,039,739 - Psyr_4231 0.68 -0.4
5,039,739 - Psyr_4231 0.68 -0.2
5,039,739 - Psyr_4231 0.68 -0.6
5,039,774 + +2.8
5,039,819 + Psyr_4231 0.75 -1.4
5,039,819 + Psyr_4231 0.75 +1.2
5,039,819 + Psyr_4231 0.75 +0.0
5,039,820 - Psyr_4231 0.75 +1.8
5,039,823 - Psyr_4231 0.75 +2.8
5,039,858 + Psyr_4231 0.78 -1.7
5,039,858 + Psyr_4231 0.78 +3.2
5,039,858 + Psyr_4231 0.78 +3.3
5,039,859 - Psyr_4231 0.78 -1.2
5,039,859 - Psyr_4231 0.78 +2.5
5,039,859 - Psyr_4231 0.78 -2.5
5,040,178 + -1.6
5,040,178 + -0.0
5,040,178 + +2.8
5,040,178 + -1.7
5,040,178 + +4.8
5,040,178 + +0.2
5,040,178 + +3.5
5,040,179 - +2.2
5,040,179 - +4.3
5,040,179 - -0.3
5,040,179 - +2.2
5,040,268 - -2.1
5,040,484 + Psyr_4232 0.21 -0.6
5,040,485 - Psyr_4232 0.22 +1.2
5,040,485 - Psyr_4232 0.22 +3.0
5,040,619 + Psyr_4232 0.40 +0.1
5,040,619 + Psyr_4232 0.40 -2.0
5,040,859 - Psyr_4232 0.74 -1.1
5,040,865 + Psyr_4232 0.75 +0.1
5,040,866 - Psyr_4232 0.75 +0.7
5,040,866 - Psyr_4232 0.75 -0.4
5,040,891 + Psyr_4232 0.78 -1.8
5,040,891 + Psyr_4232 0.78 -0.1
5,040,892 - Psyr_4232 0.79 +3.6
5,040,913 + Psyr_4232 0.82 +2.8
5,040,913 + Psyr_4232 0.82 +4.8
5,040,913 + Psyr_4232 0.82 +4.3
5,041,022 + +0.2
5,041,022 + +3.9
5,041,023 - +0.5
5,041,023 - +3.2
5,041,057 + -1.6
5,041,057 + -2.6
5,041,061 - -2.6
5,041,125 + +3.2
5,041,125 + +0.1
5,041,125 + -2.2
5,041,125 + +2.5
5,041,125 + +0.4
5,041,125 + -1.5
5,041,125 + -1.8
5,041,126 - +0.6
5,041,126 - +2.0
5,041,126 - +3.0
5,041,126 - -2.1
5,041,313 + -2.3
5,041,313 + -0.7
5,041,314 - -0.2
5,041,379 + +2.5
5,041,380 - -0.8
5,041,380 - +0.1
5,041,380 - -1.1
5,041,380 - -2.3
5,041,380 - +3.2
5,041,446 + Psyr_4233 0.12 +1.2
5,041,446 + Psyr_4233 0.12 -2.0
5,041,470 + Psyr_4233 0.14 +4.1
5,041,650 + Psyr_4233 0.25 -1.2
5,041,795 - Psyr_4233 0.35 +0.1
5,042,024 + Psyr_4233 0.49 +0.0
5,042,025 - Psyr_4233 0.50 -0.7

Or see this region's nucleotide sequence