Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4156 and Psyr_4157 are separated by 2 nucleotides Psyr_4157 and Psyr_4158 are separated by 48 nucleotides Psyr_4158 and Psyr_4159 are separated by 180 nucleotides
Psyr_4156: Psyr_4156 - microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62, at 4,942,351 to 4,943,790
_4156
Psyr_4157: Psyr_4157 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 4,943,793 to 4,944,638
_4157
Psyr_4158: Psyr_4158 - conserved hypothetical protein, at 4,944,687 to 4,948,502
_4158
Psyr_4159: Psyr_4159 - RNAse G, at 4,948,683 to 4,950,140
_4159
Position (kb)
4944
4945
4946
4947
4948
4949 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 4943.790 kb on + strand at 4943.790 kb on + strand at 4943.790 kb on + strand at 4943.790 kb on + strand at 4943.790 kb on + strand at 4943.790 kb on + strand at 4943.791 kb on - strand at 4943.791 kb on - strand at 4944.022 kb on + strand, within Psyr_4157 at 4944.022 kb on + strand, within Psyr_4157 at 4944.022 kb on + strand, within Psyr_4157 at 4944.022 kb on + strand, within Psyr_4157 at 4944.022 kb on + strand, within Psyr_4157 at 4944.023 kb on - strand, within Psyr_4157 at 4944.023 kb on - strand, within Psyr_4157 at 4944.023 kb on - strand, within Psyr_4157 at 4944.023 kb on - strand, within Psyr_4157 at 4944.142 kb on + strand, within Psyr_4157 at 4944.143 kb on - strand, within Psyr_4157 at 4944.143 kb on - strand, within Psyr_4157 at 4944.167 kb on - strand, within Psyr_4157 at 4944.232 kb on + strand, within Psyr_4157 at 4944.232 kb on + strand, within Psyr_4157 at 4944.232 kb on + strand, within Psyr_4157 at 4944.232 kb on + strand, within Psyr_4157 at 4944.232 kb on + strand, within Psyr_4157 at 4944.233 kb on - strand, within Psyr_4157 at 4944.233 kb on - strand, within Psyr_4157 at 4944.233 kb on - strand, within Psyr_4157 at 4944.233 kb on - strand, within Psyr_4157 at 4944.233 kb on - strand, within Psyr_4157 at 4944.233 kb on - strand, within Psyr_4157 at 4944.409 kb on - strand, within Psyr_4157 at 4944.673 kb on + strand at 4944.673 kb on + strand at 4944.674 kb on - strand at 4944.674 kb on - strand at 4944.674 kb on - strand at 4944.674 kb on - strand at 4944.674 kb on - strand at 4944.754 kb on + strand at 4944.754 kb on + strand at 4944.754 kb on + strand at 4944.754 kb on + strand at 4944.754 kb on + strand at 4944.755 kb on - strand at 4944.985 kb on + strand at 4944.985 kb on + strand at 4944.985 kb on + strand at 4944.985 kb on + strand at 4944.985 kb on + strand at 4944.985 kb on + strand at 4944.985 kb on + strand at 4944.986 kb on - strand at 4944.986 kb on - strand at 4944.986 kb on - strand at 4944.986 kb on - strand at 4944.986 kb on - strand at 4945.027 kb on + strand at 4945.028 kb on - strand at 4945.048 kb on - strand at 4945.383 kb on - strand, within Psyr_4158 at 4945.594 kb on + strand, within Psyr_4158 at 4945.594 kb on + strand, within Psyr_4158 at 4945.813 kb on + strand, within Psyr_4158 at 4945.988 kb on - strand, within Psyr_4158 at 4945.988 kb on - strand, within Psyr_4158 at 4946.115 kb on + strand, within Psyr_4158 at 4946.159 kb on - strand, within Psyr_4158 at 4946.595 kb on - strand, within Psyr_4158 at 4946.642 kb on + strand, within Psyr_4158 at 4946.642 kb on + strand, within Psyr_4158 at 4946.643 kb on - strand, within Psyr_4158 at 4946.643 kb on - strand, within Psyr_4158 at 4946.703 kb on + strand, within Psyr_4158 at 4946.703 kb on + strand, within Psyr_4158 at 4946.703 kb on + strand, within Psyr_4158 at 4946.703 kb on + strand, within Psyr_4158 at 4946.703 kb on + strand, within Psyr_4158 at 4946.704 kb on - strand, within Psyr_4158 at 4946.704 kb on - strand, within Psyr_4158 at 4946.704 kb on - strand, within Psyr_4158 at 4946.722 kb on + strand, within Psyr_4158 at 4946.723 kb on - strand, within Psyr_4158 at 4946.723 kb on - strand, within Psyr_4158 at 4946.723 kb on - strand, within Psyr_4158 at 4946.938 kb on + strand, within Psyr_4158 at 4946.939 kb on - strand, within Psyr_4158 at 4946.939 kb on - strand, within Psyr_4158 at 4946.939 kb on - strand, within Psyr_4158 at 4946.951 kb on - strand, within Psyr_4158 at 4946.951 kb on - strand, within Psyr_4158 at 4946.992 kb on + strand, within Psyr_4158 at 4946.992 kb on + strand, within Psyr_4158 at 4946.992 kb on + strand, within Psyr_4158 at 4946.993 kb on - strand, within Psyr_4158 at 4946.993 kb on - strand, within Psyr_4158 at 4946.993 kb on - strand, within Psyr_4158 at 4947.351 kb on + strand, within Psyr_4158 at 4947.351 kb on + strand, within Psyr_4158 at 4947.352 kb on - strand, within Psyr_4158 at 4947.352 kb on - strand, within Psyr_4158 at 4947.352 kb on - strand, within Psyr_4158 at 4947.352 kb on - strand, within Psyr_4158 at 4947.352 kb on - strand, within Psyr_4158 at 4947.655 kb on + strand, within Psyr_4158 at 4947.656 kb on - strand, within Psyr_4158 at 4947.823 kb on + strand, within Psyr_4158 at 4947.823 kb on + strand, within Psyr_4158 at 4947.824 kb on - strand, within Psyr_4158 at 4947.824 kb on - strand, within Psyr_4158 at 4947.935 kb on - strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.960 kb on + strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.961 kb on - strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.964 kb on + strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4947.965 kb on - strand, within Psyr_4158 at 4948.222 kb on - strand at 4948.304 kb on + strand at 4948.304 kb on + strand at 4948.305 kb on - strand at 4948.305 kb on - strand at 4948.417 kb on + strand at 4948.417 kb on + strand at 4948.418 kb on - strand at 4948.418 kb on - strand at 4948.584 kb on - strand at 4948.584 kb on - strand at 4948.629 kb on + strand at 4948.630 kb on - strand at 4948.630 kb on - strand at 4948.660 kb on + strand at 4948.702 kb on + strand at 4948.703 kb on - strand at 4948.703 kb on - strand at 4948.717 kb on + strand at 4948.717 kb on + strand at 4948.717 kb on + strand at 4948.718 kb on - strand at 4948.718 kb on - strand at 4948.718 kb on - strand at 4948.718 kb on - strand at 4948.754 kb on + strand at 4948.754 kb on + strand at 4948.849 kb on + strand, within Psyr_4159 at 4948.850 kb on - strand, within Psyr_4159 at 4948.850 kb on - strand, within Psyr_4159 at 4948.889 kb on - strand, within Psyr_4159 at 4949.344 kb on + strand, within Psyr_4159
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,943,790 + -1.2 4,943,790 + -3.3 4,943,790 + -1.7 4,943,790 + +4.5 4,943,790 + -0.6 4,943,790 + -0.0 4,943,791 - -0.4 4,943,791 - -0.8 4,944,022 + Psyr_4157 0.27 +2.2 4,944,022 + Psyr_4157 0.27 +4.0 4,944,022 + Psyr_4157 0.27 +2.2 4,944,022 + Psyr_4157 0.27 +1.2 4,944,022 + Psyr_4157 0.27 +0.2 4,944,023 - Psyr_4157 0.27 +0.8 4,944,023 - Psyr_4157 0.27 +0.5 4,944,023 - Psyr_4157 0.27 +1.7 4,944,023 - Psyr_4157 0.27 +0.4 4,944,142 + Psyr_4157 0.41 -0.2 4,944,143 - Psyr_4157 0.41 +1.2 4,944,143 - Psyr_4157 0.41 +0.2 4,944,167 - Psyr_4157 0.44 -0.6 4,944,232 + Psyr_4157 0.52 -1.5 4,944,232 + Psyr_4157 0.52 -1.1 4,944,232 + Psyr_4157 0.52 -0.5 4,944,232 + Psyr_4157 0.52 -1.1 4,944,232 + Psyr_4157 0.52 -2.5 4,944,233 - Psyr_4157 0.52 +2.2 4,944,233 - Psyr_4157 0.52 -2.7 4,944,233 - Psyr_4157 0.52 -0.8 4,944,233 - Psyr_4157 0.52 -1.8 4,944,233 - Psyr_4157 0.52 +2.5 4,944,233 - Psyr_4157 0.52 +3.0 4,944,409 - Psyr_4157 0.73 +3.3 4,944,673 + -0.8 4,944,673 + -0.6 4,944,674 - +1.2 4,944,674 - +3.3 4,944,674 - +0.2 4,944,674 - -1.7 4,944,674 - -2.2 4,944,754 + +1.7 4,944,754 + -4.8 4,944,754 + +1.2 4,944,754 + -2.2 4,944,754 + -3.5 4,944,755 - +0.2 4,944,985 + +0.2 4,944,985 + -4.4 4,944,985 + -3.2 4,944,985 + +0.2 4,944,985 + +1.7 4,944,985 + +1.7 4,944,985 + +0.2 4,944,986 - +2.2 4,944,986 - -3.7 4,944,986 - +1.2 4,944,986 - +0.2 4,944,986 - -0.4 4,945,027 + +0.2 4,945,028 - +0.2 4,945,048 - +0.2 4,945,383 - Psyr_4158 0.18 -4.2 4,945,594 + Psyr_4158 0.24 +1.2 4,945,594 + Psyr_4158 0.24 +0.2 4,945,813 + Psyr_4158 0.30 +0.2 4,945,988 - Psyr_4158 0.34 +0.2 4,945,988 - Psyr_4158 0.34 -2.8 4,946,115 + Psyr_4158 0.37 +1.7 4,946,159 - Psyr_4158 0.39 +1.2 4,946,595 - Psyr_4158 0.50 +1.7 4,946,642 + Psyr_4158 0.51 -2.4 4,946,642 + Psyr_4158 0.51 +1.2 4,946,643 - Psyr_4158 0.51 +0.2 4,946,643 - Psyr_4158 0.51 -2.3 4,946,703 + Psyr_4158 0.53 +0.2 4,946,703 + Psyr_4158 0.53 +0.2 4,946,703 + Psyr_4158 0.53 -2.0 4,946,703 + Psyr_4158 0.53 +0.2 4,946,703 + Psyr_4158 0.53 +1.2 4,946,704 - Psyr_4158 0.53 -3.9 4,946,704 - Psyr_4158 0.53 +1.2 4,946,704 - Psyr_4158 0.53 -3.3 4,946,722 + Psyr_4158 0.53 -2.4 4,946,723 - Psyr_4158 0.53 -2.8 4,946,723 - Psyr_4158 0.53 +0.2 4,946,723 - Psyr_4158 0.53 -2.7 4,946,938 + Psyr_4158 0.59 -2.4 4,946,939 - Psyr_4158 0.59 +1.2 4,946,939 - Psyr_4158 0.59 -3.0 4,946,939 - Psyr_4158 0.59 +0.2 4,946,951 - Psyr_4158 0.59 +1.7 4,946,951 - Psyr_4158 0.59 -2.2 4,946,992 + Psyr_4158 0.60 -3.3 4,946,992 + Psyr_4158 0.60 -3.9 4,946,992 + Psyr_4158 0.60 +0.2 4,946,993 - Psyr_4158 0.60 +0.2 4,946,993 - Psyr_4158 0.60 -0.2 4,946,993 - Psyr_4158 0.60 +0.2 4,947,351 + Psyr_4158 0.70 -1.4 4,947,351 + Psyr_4158 0.70 +0.2 4,947,352 - Psyr_4158 0.70 +0.2 4,947,352 - Psyr_4158 0.70 -3.8 4,947,352 - Psyr_4158 0.70 +0.2 4,947,352 - Psyr_4158 0.70 +1.7 4,947,352 - Psyr_4158 0.70 -2.2 4,947,655 + Psyr_4158 0.78 +0.2 4,947,656 - Psyr_4158 0.78 +0.2 4,947,823 + Psyr_4158 0.82 -5.1 4,947,823 + Psyr_4158 0.82 +0.2 4,947,824 - Psyr_4158 0.82 +2.5 4,947,824 - Psyr_4158 0.82 -0.2 4,947,935 - Psyr_4158 0.85 -2.5 4,947,960 + Psyr_4158 0.86 -4.4 4,947,960 + Psyr_4158 0.86 +0.2 4,947,960 + Psyr_4158 0.86 -1.4 4,947,960 + Psyr_4158 0.86 +0.2 4,947,960 + Psyr_4158 0.86 +0.2 4,947,961 - Psyr_4158 0.86 +0.2 4,947,961 - Psyr_4158 0.86 -2.7 4,947,961 - Psyr_4158 0.86 +0.2 4,947,961 - Psyr_4158 0.86 +3.2 4,947,961 - Psyr_4158 0.86 -1.4 4,947,961 - Psyr_4158 0.86 -0.8 4,947,964 + Psyr_4158 0.86 +0.2 4,947,964 + Psyr_4158 0.86 +1.2 4,947,964 + Psyr_4158 0.86 +0.2 4,947,964 + Psyr_4158 0.86 +0.2 4,947,964 + Psyr_4158 0.86 +1.2 4,947,964 + Psyr_4158 0.86 +0.2 4,947,964 + Psyr_4158 0.86 -1.4 4,947,965 - Psyr_4158 0.86 +1.7 4,947,965 - Psyr_4158 0.86 -2.7 4,947,965 - Psyr_4158 0.86 -1.8 4,947,965 - Psyr_4158 0.86 +0.2 4,947,965 - Psyr_4158 0.86 -4.1 4,947,965 - Psyr_4158 0.86 -2.8 4,947,965 - Psyr_4158 0.86 -1.4 4,947,965 - Psyr_4158 0.86 +1.2 4,947,965 - Psyr_4158 0.86 +0.2 4,947,965 - Psyr_4158 0.86 -2.8 4,947,965 - Psyr_4158 0.86 +3.3 4,947,965 - Psyr_4158 0.86 +0.2 4,948,222 - -2.0 4,948,304 + +0.2 4,948,304 + +1.2 4,948,305 - +0.2 4,948,305 - -3.5 4,948,417 + +0.2 4,948,417 + -4.2 4,948,418 - -3.0 4,948,418 - +2.2 4,948,584 - -0.8 4,948,584 - -0.0 4,948,629 + +1.2 4,948,630 - +2.5 4,948,630 - +2.2 4,948,660 + +0.2 4,948,702 + +2.5 4,948,703 - -0.2 4,948,703 - +1.7 4,948,717 + +3.5 4,948,717 + +1.7 4,948,717 + -3.0 4,948,718 - +2.2 4,948,718 - -0.8 4,948,718 - -2.5 4,948,718 - -1.3 4,948,754 + +1.2 4,948,754 + -2.2 4,948,849 + Psyr_4159 0.11 +1.2 4,948,850 - Psyr_4159 0.11 +3.5 4,948,850 - Psyr_4159 0.11 -0.4 4,948,889 - Psyr_4159 0.14 -1.2 4,949,344 + Psyr_4159 0.45 +2.2
Or see this region's nucleotide sequence