Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4140

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
4,928,214	+		Psyr_4138	0.33	-1.2
4,928,331	+		Psyr_4138	0.51	+0.1
4,928,332	-		Psyr_4138	0.51	-1.4
4,928,404	-		Psyr_4138	0.62	+0.1
4,928,404	-		Psyr_4138	0.62	-1.6
4,928,404	-		Psyr_4138	0.62	-0.4
4,928,478	+		Psyr_4138	0.73	+2.1
4,928,479	-		Psyr_4138	0.74	-1.4
4,928,479	-		Psyr_4138	0.74	-0.7
4,928,479	-		Psyr_4138	0.74	+2.5
4,928,503	-		Psyr_4138	0.77	-1.5
4,928,503	-		Psyr_4138	0.77	+2.7
4,928,503	-		Psyr_4138	0.77	-4.6
4,928,618	+				-0.1
4,928,619	-				-2.3
4,928,642	-				+1.7
4,928,642	-				-0.3
4,928,679	-				-2.8
4,928,679	-				-2.2
4,928,685	-				+2.5
4,928,685	-				-4.7
4,928,744	+		Psyr_4139	0.18	-2.7
4,928,797	+		Psyr_4139	0.29	-2.5
4,928,797	+		Psyr_4139	0.29	-3.7
4,928,797	+		Psyr_4139	0.29	+1.7
4,928,797	+		Psyr_4139	0.29	-0.9
4,928,798	-		Psyr_4139	0.29	-1.7
4,928,798	-		Psyr_4139	0.29	+2.5
4,928,900	+		Psyr_4139	0.51	-4.4
4,928,955	+		Psyr_4139	0.63	+1.7
4,928,955	+		Psyr_4139	0.63	-1.8
4,928,955	+		Psyr_4139	0.63	+0.7
4,928,955	+		Psyr_4139	0.63	+2.2
4,928,956	-		Psyr_4139	0.63	-1.7
4,928,956	-		Psyr_4139	0.63	+2.2
4,928,995	+		Psyr_4139	0.71	+1.2
4,928,995	+		Psyr_4139	0.71	+1.7
4,928,995	+		Psyr_4139	0.71	+2.2
4,928,995	+		Psyr_4139	0.71	+1.2
4,928,996	-		Psyr_4139	0.72	+1.2
4,928,996	-		Psyr_4139	0.72	-0.8
4,929,001	+		Psyr_4139	0.73	+1.7
4,929,002	-		Psyr_4139	0.73	+3.5
4,929,008	+		Psyr_4139	0.74	-0.0
4,929,011	-		Psyr_4139	0.75	-3.5
4,929,011	-		Psyr_4139	0.75	-2.2
4,929,011	-		Psyr_4139	0.75	+0.2
4,929,290	+		Psyr_4140	0.20	-1.6
4,929,290	+		Psyr_4140	0.20	+1.2
4,929,290	+		Psyr_4140	0.20	-3.8
4,929,372	+		Psyr_4140	0.31	-1.5
4,929,489	+		Psyr_4140	0.45	-0.4
4,929,489	+		Psyr_4140	0.45	-3.0
4,929,863	-				-1.5
4,929,868	+				-1.6
4,929,869	-				+1.2
4,929,916	+				+0.2
4,929,916	+				-2.7
4,929,917	-				+1.2
4,929,940	+				-2.4
4,929,940	+				+1.7
4,929,940	+				+1.2
4,929,941	-				+3.6
4,929,941	-				+2.7
4,930,017	+		Psyr_4141	0.11	-1.4
4,930,017	+		Psyr_4141	0.11	-3.3
4,930,017	+		Psyr_4141	0.11	+1.2
4,930,017	+		Psyr_4141	0.11	+1.7
4,930,088	+		Psyr_4141	0.20	-1.2
4,930,088	+		Psyr_4141	0.20	+3.5
4,930,088	+		Psyr_4141	0.20	+2.2
4,930,088	+		Psyr_4141	0.20	+0.2
4,930,088	+		Psyr_4141	0.20	-1.4
4,930,088	+		Psyr_4141	0.20	+2.2
4,930,088	+		Psyr_4141	0.20	-2.5
4,930,089	-		Psyr_4141	0.20	+0.2
4,930,089	-		Psyr_4141	0.20	-1.2
4,930,089	-		Psyr_4141	0.20	+1.2
4,930,232	+		Psyr_4141	0.38	-3.4
4,930,232	+		Psyr_4141	0.38	-3.1
4,930,232	+		Psyr_4141	0.38	-1.1
4,930,232	+		Psyr_4141	0.38	+1.2
4,930,233	-		Psyr_4141	0.38	-1.0
4,930,233	-		Psyr_4141	0.38	+2.2
4,930,233	-		Psyr_4141	0.38	+2.5
4,930,233	-		Psyr_4141	0.38	+1.2
4,930,233	-		Psyr_4141	0.38	+1.2
4,930,511	-		Psyr_4141	0.72	-0.5
4,930,651	-		Psyr_4141	0.90	-3.9
4,930,737	-				-2.0
4,930,737	-				-0.1
4,930,737	-				+0.2
4,930,737	-				-3.0
4,930,737	-				-3.2
4,930,737	-				+1.2
4,930,823	+				-1.0
4,930,823	+				+2.2
4,930,823	+				+1.2
4,930,823	+				-2.9
4,930,823	+				+2.7
4,930,824	-				+2.7
4,930,824	-				+1.0
4,930,824	-				-0.9
4,930,824	-				-3.5
4,930,825	+				-1.1
4,930,826	-				+2.7
4,930,826	-				-2.0
4,930,826	-				-1.4
4,930,826	-				-1.2
4,930,826	-				-0.1
4,930,872	+				+0.5
4,930,885	-				+2.2
4,930,902	+				+0.2