Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4111 and Psyr_4112 are separated by 750 nucleotides Psyr_4112 and Psyr_4113 are separated by 235 nucleotides
Psyr_4111: Psyr_4111 - Protein of unknown function UPF0040, at 4,901,422 to 4,901,877
_4111
Psyr_4112: Psyr_4112 - Protein of unknown function UPF0011, at 4,902,628 to 4,903,542
_4112
Psyr_4113: Psyr_4113 - LppC putative lipoprotein, at 4,903,778 to 4,905,592
_4113
Position (kb)
4902
4903
4904 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 4901.641 kb on - strand, within Psyr_4111 at 4901.895 kb on - strand at 4901.956 kb on - strand at 4901.956 kb on - strand at 4902.586 kb on - strand at 4902.586 kb on - strand at 4902.588 kb on + strand at 4902.588 kb on + strand at 4902.588 kb on + strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.589 kb on - strand at 4902.629 kb on + strand at 4902.629 kb on + strand at 4902.629 kb on + strand at 4902.630 kb on - strand at 4902.660 kb on - strand at 4902.685 kb on + strand at 4902.686 kb on - strand at 4902.834 kb on + strand, within Psyr_4112 at 4902.834 kb on + strand, within Psyr_4112 at 4902.835 kb on - strand, within Psyr_4112 at 4902.835 kb on - strand, within Psyr_4112 at 4902.868 kb on + strand, within Psyr_4112 at 4902.868 kb on + strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112 at 4902.869 kb on - strand, within Psyr_4112 at 4902.905 kb on - strand, within Psyr_4112 at 4902.992 kb on + strand, within Psyr_4112 at 4902.992 kb on + strand, within Psyr_4112 at 4902.992 kb on + strand, within Psyr_4112 at 4902.993 kb on - strand, within Psyr_4112 at 4902.993 kb on - strand, within Psyr_4112 at 4902.993 kb on - strand, within Psyr_4112 at 4902.993 kb on - strand, within Psyr_4112 at 4902.993 kb on - strand, within Psyr_4112 at 4902.993 kb on - strand, within Psyr_4112 at 4902.993 kb on - strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.995 kb on + strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4902.996 kb on - strand, within Psyr_4112 at 4903.293 kb on + strand, within Psyr_4112 at 4903.293 kb on + strand, within Psyr_4112 at 4903.293 kb on + strand, within Psyr_4112 at 4903.293 kb on + strand, within Psyr_4112 at 4903.294 kb on - strand, within Psyr_4112 at 4903.294 kb on - strand, within Psyr_4112 at 4903.294 kb on - strand, within Psyr_4112 at 4903.294 kb on - strand, within Psyr_4112 at 4903.294 kb on - strand, within Psyr_4112 at 4903.320 kb on + strand, within Psyr_4112 at 4903.320 kb on + strand, within Psyr_4112 at 4903.321 kb on - strand, within Psyr_4112 at 4903.321 kb on - strand, within Psyr_4112 at 4903.321 kb on - strand, within Psyr_4112 at 4903.437 kb on + strand, within Psyr_4112 at 4903.450 kb on + strand, within Psyr_4112 at 4903.450 kb on + strand, within Psyr_4112 at 4903.450 kb on + strand, within Psyr_4112 at 4903.451 kb on - strand at 4903.454 kb on + strand at 4903.454 kb on + strand at 4903.454 kb on + strand at 4903.455 kb on - strand at 4903.455 kb on - strand at 4903.455 kb on - strand at 4903.455 kb on - strand at 4903.455 kb on - strand at 4903.516 kb on + strand at 4903.517 kb on - strand at 4903.545 kb on + strand at 4903.545 kb on + strand at 4903.545 kb on + strand at 4903.545 kb on + strand at 4903.545 kb on + strand at 4903.545 kb on + strand at 4903.546 kb on - strand at 4903.546 kb on - strand at 4903.676 kb on - strand at 4903.698 kb on + strand at 4903.699 kb on - strand at 4903.699 kb on - strand at 4903.702 kb on + strand at 4903.702 kb on + strand at 4903.703 kb on - strand at 4903.703 kb on - strand at 4903.736 kb on + strand at 4903.737 kb on - strand at 4903.773 kb on + strand at 4903.773 kb on + strand at 4903.773 kb on + strand at 4903.773 kb on + strand at 4903.773 kb on + strand at 4903.773 kb on + strand at 4903.773 kb on + strand at 4903.773 kb on + strand at 4903.774 kb on - strand at 4903.774 kb on - strand at 4903.774 kb on - strand at 4904.359 kb on + strand, within Psyr_4113
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,901,641 - Psyr_4111 0.48 +3.3 4,901,895 - -1.7 4,901,956 - -2.3 4,901,956 - +3.5 4,902,586 - +2.0 4,902,586 - +0.4 4,902,588 + -1.7 4,902,588 + -1.3 4,902,588 + +0.1 4,902,589 - +0.5 4,902,589 - -2.2 4,902,589 - -1.2 4,902,589 - +2.9 4,902,589 - +2.1 4,902,629 + -0.5 4,902,629 + -4.8 4,902,629 + -3.2 4,902,630 - -1.8 4,902,660 - +2.1 4,902,685 + -4.6 4,902,686 - -2.8 4,902,834 + Psyr_4112 0.23 -2.8 4,902,834 + Psyr_4112 0.23 +0.1 4,902,835 - Psyr_4112 0.23 -0.6 4,902,835 - Psyr_4112 0.23 +2.7 4,902,868 + Psyr_4112 0.26 +0.1 4,902,868 + Psyr_4112 0.26 +1.1 4,902,869 - Psyr_4112 0.26 -2.4 4,902,869 - Psyr_4112 0.26 -0.4 4,902,869 - Psyr_4112 0.26 -1.0 4,902,869 - Psyr_4112 0.26 +1.1 4,902,905 - Psyr_4112 0.30 -2.5 4,902,992 + Psyr_4112 0.40 -4.7 4,902,992 + Psyr_4112 0.40 +0.1 4,902,992 + Psyr_4112 0.40 -2.9 4,902,993 - Psyr_4112 0.40 -0.7 4,902,993 - Psyr_4112 0.40 +0.1 4,902,993 - Psyr_4112 0.40 -2.5 4,902,993 - Psyr_4112 0.40 -3.7 4,902,993 - Psyr_4112 0.40 -1.7 4,902,993 - Psyr_4112 0.40 -2.3 4,902,993 - Psyr_4112 0.40 +4.0 4,902,995 + Psyr_4112 0.40 +0.1 4,902,995 + Psyr_4112 0.40 +1.7 4,902,995 + Psyr_4112 0.40 -2.4 4,902,995 + Psyr_4112 0.40 +2.5 4,902,995 + Psyr_4112 0.40 -0.2 4,902,995 + Psyr_4112 0.40 +0.1 4,902,995 + Psyr_4112 0.40 -3.7 4,902,995 + Psyr_4112 0.40 +0.1 4,902,995 + Psyr_4112 0.40 -5.0 4,902,995 + Psyr_4112 0.40 -3.6 4,902,996 - Psyr_4112 0.40 +1.1 4,902,996 - Psyr_4112 0.40 +1.7 4,902,996 - Psyr_4112 0.40 -0.3 4,902,996 - Psyr_4112 0.40 +3.6 4,902,996 - Psyr_4112 0.40 -4.1 4,902,996 - Psyr_4112 0.40 -3.0 4,902,996 - Psyr_4112 0.40 -2.7 4,902,996 - Psyr_4112 0.40 -1.3 4,902,996 - Psyr_4112 0.40 -2.3 4,902,996 - Psyr_4112 0.40 -3.0 4,902,996 - Psyr_4112 0.40 -0.7 4,902,996 - Psyr_4112 0.40 +0.1 4,902,996 - Psyr_4112 0.40 +1.1 4,903,293 + Psyr_4112 0.73 +0.1 4,903,293 + Psyr_4112 0.73 -1.8 4,903,293 + Psyr_4112 0.73 -4.7 4,903,293 + Psyr_4112 0.73 -4.8 4,903,294 - Psyr_4112 0.73 -1.2 4,903,294 - Psyr_4112 0.73 -1.2 4,903,294 - Psyr_4112 0.73 +2.1 4,903,294 - Psyr_4112 0.73 -1.0 4,903,294 - Psyr_4112 0.73 +0.3 4,903,320 + Psyr_4112 0.76 -4.8 4,903,320 + Psyr_4112 0.76 +0.1 4,903,321 - Psyr_4112 0.76 +3.6 4,903,321 - Psyr_4112 0.76 +1.4 4,903,321 - Psyr_4112 0.76 -1.8 4,903,437 + Psyr_4112 0.88 +0.1 4,903,450 + Psyr_4112 0.90 -3.7 4,903,450 + Psyr_4112 0.90 -2.9 4,903,450 + Psyr_4112 0.90 +1.1 4,903,451 - -1.7 4,903,454 + -2.6 4,903,454 + -3.0 4,903,454 + +1.7 4,903,455 - +2.9 4,903,455 - +0.2 4,903,455 - -1.7 4,903,455 - +2.5 4,903,455 - +1.7 4,903,516 + +2.1 4,903,517 - +2.9 4,903,545 + +0.1 4,903,545 + +2.7 4,903,545 + +2.5 4,903,545 + +1.5 4,903,545 + -3.5 4,903,545 + +1.7 4,903,546 - +2.1 4,903,546 - +2.9 4,903,676 - -2.5 4,903,698 + +3.3 4,903,699 - +2.5 4,903,699 - +1.7 4,903,702 + +4.0 4,903,702 + -1.0 4,903,703 - -0.9 4,903,703 - -1.8 4,903,736 + -0.1 4,903,737 - +0.6 4,903,773 + +1.9 4,903,773 + -2.5 4,903,773 + +0.1 4,903,773 + +0.1 4,903,773 + +1.0 4,903,773 + +1.7 4,903,773 + -1.7 4,903,773 + +3.5 4,903,774 - +0.3 4,903,774 - -2.1 4,903,774 - +0.1 4,904,359 + Psyr_4113 0.32 +0.8
Or see this region's nucleotide sequence