Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4112

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
4,901,641	-		Psyr_4111	0.48	+3.3
4,901,895	-				-1.7
4,901,956	-				-2.3
4,901,956	-				+3.5
4,902,586	-				+2.0
4,902,586	-				+0.4
4,902,588	+				-1.7
4,902,588	+				-1.3
4,902,588	+				+0.1
4,902,589	-				+0.5
4,902,589	-				-2.2
4,902,589	-				-1.2
4,902,589	-				+2.9
4,902,589	-				+2.1
4,902,629	+				-0.5
4,902,629	+				-4.8
4,902,629	+				-3.2
4,902,630	-				-1.8
4,902,660	-				+2.1
4,902,685	+				-4.6
4,902,686	-				-2.8
4,902,834	+		Psyr_4112	0.23	-2.8
4,902,834	+		Psyr_4112	0.23	+0.1
4,902,835	-		Psyr_4112	0.23	-0.6
4,902,835	-		Psyr_4112	0.23	+2.7
4,902,868	+		Psyr_4112	0.26	+0.1
4,902,868	+		Psyr_4112	0.26	+1.1
4,902,869	-		Psyr_4112	0.26	-2.4
4,902,869	-		Psyr_4112	0.26	-0.4
4,902,869	-		Psyr_4112	0.26	-1.0
4,902,869	-		Psyr_4112	0.26	+1.1
4,902,905	-		Psyr_4112	0.30	-2.5
4,902,992	+		Psyr_4112	0.40	-4.7
4,902,992	+		Psyr_4112	0.40	+0.1
4,902,992	+		Psyr_4112	0.40	-2.9
4,902,993	-		Psyr_4112	0.40	-0.7
4,902,993	-		Psyr_4112	0.40	+0.1
4,902,993	-		Psyr_4112	0.40	-2.5
4,902,993	-		Psyr_4112	0.40	-3.7
4,902,993	-		Psyr_4112	0.40	-1.7
4,902,993	-		Psyr_4112	0.40	-2.3
4,902,993	-		Psyr_4112	0.40	+4.0
4,902,995	+		Psyr_4112	0.40	+0.1
4,902,995	+		Psyr_4112	0.40	+1.7
4,902,995	+		Psyr_4112	0.40	-2.4
4,902,995	+		Psyr_4112	0.40	+2.5
4,902,995	+		Psyr_4112	0.40	-0.2
4,902,995	+		Psyr_4112	0.40	+0.1
4,902,995	+		Psyr_4112	0.40	-3.7
4,902,995	+		Psyr_4112	0.40	+0.1
4,902,995	+		Psyr_4112	0.40	-5.0
4,902,995	+		Psyr_4112	0.40	-3.6
4,902,996	-		Psyr_4112	0.40	+1.1
4,902,996	-		Psyr_4112	0.40	+1.7
4,902,996	-		Psyr_4112	0.40	-0.3
4,902,996	-		Psyr_4112	0.40	+3.6
4,902,996	-		Psyr_4112	0.40	-4.1
4,902,996	-		Psyr_4112	0.40	-3.0
4,902,996	-		Psyr_4112	0.40	-2.7
4,902,996	-		Psyr_4112	0.40	-1.3
4,902,996	-		Psyr_4112	0.40	-2.3
4,902,996	-		Psyr_4112	0.40	-3.0
4,902,996	-		Psyr_4112	0.40	-0.7
4,902,996	-		Psyr_4112	0.40	+0.1
4,902,996	-		Psyr_4112	0.40	+1.1
4,903,293	+		Psyr_4112	0.73	+0.1
4,903,293	+		Psyr_4112	0.73	-1.8
4,903,293	+		Psyr_4112	0.73	-4.7
4,903,293	+		Psyr_4112	0.73	-4.8
4,903,294	-		Psyr_4112	0.73	-1.2
4,903,294	-		Psyr_4112	0.73	-1.2
4,903,294	-		Psyr_4112	0.73	+2.1
4,903,294	-		Psyr_4112	0.73	-1.0
4,903,294	-		Psyr_4112	0.73	+0.3
4,903,320	+		Psyr_4112	0.76	-4.8
4,903,320	+		Psyr_4112	0.76	+0.1
4,903,321	-		Psyr_4112	0.76	+3.6
4,903,321	-		Psyr_4112	0.76	+1.4
4,903,321	-		Psyr_4112	0.76	-1.8
4,903,437	+		Psyr_4112	0.88	+0.1
4,903,450	+		Psyr_4112	0.90	-3.7
4,903,450	+		Psyr_4112	0.90	-2.9
4,903,450	+		Psyr_4112	0.90	+1.1
4,903,451	-				-1.7
4,903,454	+				-2.6
4,903,454	+				-3.0
4,903,454	+				+1.7
4,903,455	-				+2.9
4,903,455	-				+0.2
4,903,455	-				-1.7
4,903,455	-				+2.5
4,903,455	-				+1.7
4,903,516	+				+2.1
4,903,517	-				+2.9
4,903,545	+				+0.1
4,903,545	+				+2.7
4,903,545	+				+2.5
4,903,545	+				+1.5
4,903,545	+				-3.5
4,903,545	+				+1.7
4,903,546	-				+2.1
4,903,546	-				+2.9
4,903,676	-				-2.5
4,903,698	+				+3.3
4,903,699	-				+2.5
4,903,699	-				+1.7
4,903,702	+				+4.0
4,903,702	+				-1.0
4,903,703	-				-0.9
4,903,703	-				-1.8
4,903,736	+				-0.1
4,903,737	-				+0.6
4,903,773	+				+1.9
4,903,773	+				-2.5
4,903,773	+				+0.1
4,903,773	+				+0.1
4,903,773	+				+1.0
4,903,773	+				+1.7
4,903,773	+				-1.7
4,903,773	+				+3.5
4,903,774	-				+0.3
4,903,774	-				-2.1
4,903,774	-				+0.1
4,904,359	+		Psyr_4113	0.32	+0.8