Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4067 and Psyr_4068 are separated by 4 nucleotides Psyr_4068 and Psyr_4069 are separated by 200 nucleotides Psyr_4069 and Psyr_4070 overlap by 11 nucleotides Psyr_4070 and Psyr_4071 are separated by 177 nucleotides
Psyr_4067: Psyr_4067 - Lipopolysaccharide kinase, at 4,850,956 to 4,851,678
_4067
Psyr_4068: Psyr_4068 - conserved hypothetical protein, at 4,851,683 to 4,852,363
_4068
Psyr_4069: Psyr_4069 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,852,564 to 4,853,853
_4069
Psyr_4070: Psyr_4070 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,853,843 to 4,854,526
_4070
Psyr_4071: Psyr_4071 - Phosphoesterase, PA-phosphatase related protein, at 4,854,704 to 4,855,444
_4071
Position (kb) 4852
4853
4854 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4851.684 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.691 kb on + strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.692 kb on - strand at 4851.696 kb on - strand at 4851.696 kb on - strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.702 kb on + strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.703 kb on - strand at 4851.720 kb on + strand at 4851.720 kb on + strand at 4851.720 kb on + strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.721 kb on - strand at 4851.816 kb on + strand, within Psyr_4068 at 4851.944 kb on + strand, within Psyr_4068 at 4851.945 kb on - strand, within Psyr_4068 at 4852.008 kb on - strand, within Psyr_4068 at 4852.058 kb on + strand, within Psyr_4068 at 4852.068 kb on - strand, within Psyr_4068 at 4852.121 kb on - strand, within Psyr_4068 at 4852.279 kb on + strand, within Psyr_4068 at 4852.302 kb on + strand at 4852.303 kb on - strand at 4852.326 kb on + strand at 4852.327 kb on - strand at 4852.397 kb on + strand at 4852.397 kb on + strand at 4852.397 kb on + strand at 4852.398 kb on - strand at 4852.398 kb on - strand at 4852.453 kb on - strand at 4852.549 kb on + strand at 4852.550 kb on - strand at 4852.650 kb on + strand at 4852.650 kb on + strand at 4852.650 kb on + strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.651 kb on - strand at 4852.807 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.922 kb on + strand, within Psyr_4069 at 4852.923 kb on - strand, within Psyr_4069 at 4852.923 kb on - strand, within Psyr_4069 at 4853.182 kb on - strand, within Psyr_4069 at 4853.208 kb on + strand, within Psyr_4069 at 4853.208 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.214 kb on + strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.215 kb on - strand, within Psyr_4069 at 4853.543 kb on + strand, within Psyr_4069 at 4853.544 kb on - strand, within Psyr_4069 at 4853.544 kb on - strand, within Psyr_4069 at 4853.636 kb on + strand, within Psyr_4069 at 4853.637 kb on - strand, within Psyr_4069 at 4853.637 kb on - strand, within Psyr_4069 at 4853.637 kb on - strand, within Psyr_4069 at 4853.844 kb on + strand at 4854.124 kb on - strand, within Psyr_4070 at 4854.148 kb on + strand, within Psyr_4070 at 4854.149 kb on - strand, within Psyr_4070 at 4854.231 kb on + strand, within Psyr_4070 at 4854.231 kb on + strand, within Psyr_4070 at 4854.232 kb on - strand, within Psyr_4070 at 4854.393 kb on + strand, within Psyr_4070 at 4854.393 kb on + strand, within Psyr_4070 at 4854.393 kb on + strand, within Psyr_4070 at 4854.393 kb on + strand, within Psyr_4070 at 4854.393 kb on + strand, within Psyr_4070 at 4854.394 kb on - strand, within Psyr_4070 at 4854.451 kb on + strand, within Psyr_4070 at 4854.453 kb on + strand, within Psyr_4070 at 4854.453 kb on + strand, within Psyr_4070 at 4854.453 kb on + strand, within Psyr_4070 at 4854.454 kb on - strand, within Psyr_4070 at 4854.539 kb on + strand at 4854.539 kb on + strand at 4854.540 kb on - strand at 4854.540 kb on - strand at 4854.563 kb on + strand at 4854.563 kb on + strand at 4854.564 kb on - strand at 4854.564 kb on - strand at 4854.564 kb on - strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.618 kb on + strand at 4854.619 kb on - strand at 4854.619 kb on - strand at 4854.619 kb on - strand at 4854.628 kb on - strand at 4854.628 kb on - strand at 4854.669 kb on - strand at 4854.669 kb on - strand at 4854.729 kb on - strand at 4854.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,851,684 + +4.4 4,851,691 + +0.0 4,851,691 + -0.7 4,851,691 + -0.4 4,851,691 + +4.7 4,851,691 + -1.8 4,851,691 + -0.7 4,851,692 - +4.4 4,851,692 - -2.7 4,851,692 - -0.7 4,851,692 - -2.8 4,851,696 - -0.9 4,851,696 - +4.9 4,851,702 + +0.9 4,851,702 + -0.4 4,851,702 + -3.8 4,851,702 + +3.3 4,851,702 + +2.4 4,851,702 + -0.9 4,851,702 + -0.2 4,851,702 + +3.8 4,851,702 + +0.1 4,851,702 + +0.2 4,851,702 + -0.6 4,851,702 + -2.2 4,851,702 + -0.3 4,851,703 - +0.2 4,851,703 - +3.6 4,851,703 - -0.2 4,851,703 - -1.5 4,851,703 - -2.0 4,851,703 - +0.6 4,851,703 - +1.2 4,851,703 - +4.1 4,851,703 - +1.1 4,851,703 - -2.3 4,851,703 - +2.4 4,851,703 - +2.4 4,851,703 - -2.5 4,851,720 + +2.6 4,851,720 + +2.6 4,851,720 + +1.7 4,851,721 - +3.6 4,851,721 - +0.3 4,851,721 - -1.5 4,851,721 - -0.4 4,851,721 - -1.2 4,851,816 + Psyr_4068 0.20 +1.7 4,851,944 + Psyr_4068 0.38 -0.7 4,851,945 - Psyr_4068 0.38 -1.1 4,852,008 - Psyr_4068 0.48 -0.6 4,852,058 + Psyr_4068 0.55 +0.7 4,852,068 - Psyr_4068 0.57 -3.0 4,852,121 - Psyr_4068 0.64 -0.6 4,852,279 + Psyr_4068 0.88 -1.5 4,852,302 + +3.4 4,852,303 - -0.0 4,852,326 + -1.9 4,852,327 - +2.9 4,852,397 + +0.2 4,852,397 + -0.2 4,852,397 + +1.1 4,852,398 - -2.3 4,852,398 - -1.8 4,852,453 - +2.1 4,852,549 + -1.1 4,852,550 - -0.6 4,852,650 + -1.8 4,852,650 + -1.3 4,852,650 + -1.8 4,852,651 - +0.7 4,852,651 - -2.0 4,852,651 - -2.2 4,852,651 - +0.0 4,852,807 + Psyr_4069 0.19 +2.7 4,852,922 + Psyr_4069 0.28 +2.0 4,852,922 + Psyr_4069 0.28 +2.9 4,852,922 + Psyr_4069 0.28 -0.0 4,852,923 - Psyr_4069 0.28 -0.1 4,852,923 - Psyr_4069 0.28 +0.7 4,853,182 - Psyr_4069 0.48 +2.1 4,853,208 + Psyr_4069 0.50 +3.6 4,853,208 + Psyr_4069 0.50 +3.9 4,853,214 + Psyr_4069 0.50 -2.4 4,853,214 + Psyr_4069 0.50 +1.6 4,853,214 + Psyr_4069 0.50 +2.9 4,853,214 + Psyr_4069 0.50 -0.2 4,853,214 + Psyr_4069 0.50 -1.0 4,853,214 + Psyr_4069 0.50 -0.5 4,853,214 + Psyr_4069 0.50 -1.4 4,853,214 + Psyr_4069 0.50 -0.8 4,853,214 + Psyr_4069 0.50 +2.1 4,853,214 + Psyr_4069 0.50 +0.9 4,853,215 - Psyr_4069 0.50 +2.4 4,853,215 - Psyr_4069 0.50 +2.1 4,853,215 - Psyr_4069 0.50 +2.4 4,853,215 - Psyr_4069 0.50 +3.1 4,853,215 - Psyr_4069 0.50 +1.1 4,853,215 - Psyr_4069 0.50 -0.8 4,853,215 - Psyr_4069 0.50 +3.0 4,853,215 - Psyr_4069 0.50 +1.4 4,853,215 - Psyr_4069 0.50 +3.9 4,853,215 - Psyr_4069 0.50 +2.4 4,853,215 - Psyr_4069 0.50 -1.2 4,853,215 - Psyr_4069 0.50 -2.2 4,853,543 + Psyr_4069 0.76 +2.1 4,853,544 - Psyr_4069 0.76 -1.9 4,853,544 - Psyr_4069 0.76 +1.0 4,853,636 + Psyr_4069 0.83 -1.5 4,853,637 - Psyr_4069 0.83 +0.1 4,853,637 - Psyr_4069 0.83 -0.7 4,853,637 - Psyr_4069 0.83 +0.7 4,853,844 + +2.4 4,854,124 - Psyr_4070 0.41 -0.9 4,854,148 + Psyr_4070 0.45 -0.2 4,854,149 - Psyr_4070 0.45 -0.8 4,854,231 + Psyr_4070 0.57 -0.1 4,854,231 + Psyr_4070 0.57 -0.6 4,854,232 - Psyr_4070 0.57 -0.7 4,854,393 + Psyr_4070 0.80 -3.4 4,854,393 + Psyr_4070 0.80 +2.7 4,854,393 + Psyr_4070 0.80 +0.0 4,854,393 + Psyr_4070 0.80 +4.1 4,854,393 + Psyr_4070 0.80 +0.1 4,854,394 - Psyr_4070 0.81 +4.9 4,854,451 + Psyr_4070 0.89 -2.7 4,854,453 + Psyr_4070 0.89 +2.9 4,854,453 + Psyr_4070 0.89 +2.4 4,854,453 + Psyr_4070 0.89 -0.1 4,854,454 - Psyr_4070 0.89 -0.7 4,854,539 + +0.2 4,854,539 + -1.2 4,854,540 - -1.1 4,854,540 - +4.4 4,854,563 + -1.9 4,854,563 + -1.3 4,854,564 - +0.1 4,854,564 - -1.0 4,854,564 - -1.6 4,854,618 + -1.0 4,854,618 + +3.6 4,854,618 + +4.1 4,854,618 + +2.9 4,854,618 + +2.4 4,854,619 - +4.4 4,854,619 - -2.5 4,854,619 - +0.0 4,854,628 - +3.4 4,854,628 - +2.7 4,854,669 - -1.8 4,854,669 - +0.9 4,854,729 - +3.6 4,854,755 + -1.6
Or see this region's nucleotide sequence