Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4059 and Psyr_4060 are separated by 337 nucleotides Psyr_4060 and Psyr_4061 are separated by 180 nucleotides
Psyr_4059: Psyr_4059 - Superoxide dismutase, at 4,841,455 to 4,842,036
_4059
Psyr_4060: Psyr_4060 - diguanylate cyclase/phosphodiesterase, at 4,842,374 to 4,844,491
_4060
Psyr_4061: Psyr_4061 - imelysin, Metallo peptidase, MEROPS family M75, at 4,844,672 to 4,846,048
_4061
Position (kb) 4842
4843
4844
4845 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4841.374 kb on + strand at 4841.374 kb on + strand at 4841.395 kb on + strand at 4841.395 kb on + strand at 4841.396 kb on - strand at 4842.063 kb on + strand at 4842.064 kb on - strand at 4842.188 kb on + strand at 4842.188 kb on + strand at 4842.189 kb on - strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.198 kb on - strand at 4842.198 kb on - strand at 4842.214 kb on - strand at 4842.214 kb on - strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.243 kb on - strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.257 kb on + strand at 4842.258 kb on - strand at 4842.280 kb on + strand at 4842.280 kb on + strand at 4842.280 kb on + strand at 4842.281 kb on - strand at 4842.281 kb on - strand at 4842.408 kb on + strand at 4842.409 kb on - strand at 4842.427 kb on + strand at 4842.427 kb on + strand at 4842.427 kb on + strand at 4842.551 kb on + strand at 4842.552 kb on - strand at 4842.552 kb on - strand at 4842.630 kb on - strand, within Psyr_4060 at 4842.705 kb on + strand, within Psyr_4060 at 4842.705 kb on + strand, within Psyr_4060 at 4842.845 kb on + strand, within Psyr_4060 at 4842.849 kb on - strand, within Psyr_4060 at 4842.884 kb on + strand, within Psyr_4060 at 4842.965 kb on + strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.974 kb on + strand, within Psyr_4060 at 4842.974 kb on + strand, within Psyr_4060 at 4842.975 kb on - strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.193 kb on + strand, within Psyr_4060 at 4843.194 kb on - strand, within Psyr_4060 at 4843.341 kb on - strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.360 kb on - strand, within Psyr_4060 at 4843.360 kb on - strand, within Psyr_4060 at 4843.360 kb on - strand, within Psyr_4060 at 4843.398 kb on + strand, within Psyr_4060 at 4843.398 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.755 kb on - strand, within Psyr_4060 at 4843.755 kb on - strand, within Psyr_4060 at 4843.755 kb on - strand, within Psyr_4060 at 4843.755 kb on - strand, within Psyr_4060 at 4843.763 kb on + strand, within Psyr_4060 at 4843.764 kb on - strand, within Psyr_4060 at 4843.764 kb on - strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.861 kb on - strand, within Psyr_4060 at 4843.861 kb on - strand, within Psyr_4060 at 4843.861 kb on - strand, within Psyr_4060 at 4844.052 kb on - strand, within Psyr_4060 at 4844.110 kb on + strand, within Psyr_4060 at 4844.110 kb on + strand, within Psyr_4060 at 4844.110 kb on + strand, within Psyr_4060 at 4844.110 kb on + strand, within Psyr_4060 at 4844.111 kb on - strand, within Psyr_4060 at 4844.111 kb on - strand, within Psyr_4060 at 4844.111 kb on - strand, within Psyr_4060 at 4844.111 kb on - strand, within Psyr_4060 at 4844.111 kb on - strand, within Psyr_4060 at 4844.205 kb on - strand, within Psyr_4060 at 4844.284 kb on + strand at 4844.284 kb on + strand at 4844.284 kb on + strand at 4844.285 kb on - strand at 4844.285 kb on - strand at 4844.285 kb on - strand at 4844.285 kb on - strand at 4844.287 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.408 kb on + strand at 4844.409 kb on - strand at 4844.415 kb on - strand at 4844.451 kb on - strand at 4844.451 kb on - strand at 4844.451 kb on - strand at 4844.451 kb on - strand at 4844.540 kb on + strand at 4844.540 kb on + strand at 4844.540 kb on + strand at 4844.540 kb on + strand at 4844.540 kb on + strand at 4844.541 kb on - strand at 4844.541 kb on - strand at 4844.680 kb on + strand at 4844.681 kb on - strand at 4844.681 kb on - strand at 4844.681 kb on - strand at 4844.699 kb on - strand at 4844.716 kb on + strand at 4844.717 kb on - strand at 4844.894 kb on + strand at 4844.894 kb on + strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4845.039 kb on - strand, within Psyr_4061 at 4845.039 kb on - strand, within Psyr_4061 at 4845.039 kb on - strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.149 kb on + strand, within Psyr_4061 at 4845.440 kb on + strand, within Psyr_4061 at 4845.441 kb on - strand, within Psyr_4061
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,841,374 + -0.7 4,841,374 + +3.9 4,841,395 + -0.6 4,841,395 + -3.6 4,841,396 - -4.1 4,842,063 + -1.0 4,842,064 - +2.4 4,842,188 + -0.0 4,842,188 + +3.3 4,842,189 - +0.0 4,842,197 + -0.8 4,842,197 + +3.9 4,842,197 + -2.8 4,842,197 + -0.1 4,842,197 + +2.4 4,842,198 - -0.8 4,842,198 - -2.3 4,842,214 - +3.7 4,842,214 - -2.0 4,842,234 + +0.7 4,842,234 + -0.2 4,842,234 + +2.9 4,842,234 + -2.5 4,842,234 + -0.5 4,842,234 + +2.9 4,842,234 + -0.3 4,842,234 + -0.5 4,842,235 - +3.9 4,842,235 - -1.0 4,842,235 - +0.1 4,842,235 - -1.2 4,842,235 - -1.3 4,842,235 - -0.8 4,842,235 - +4.0 4,842,235 - -0.1 4,842,243 - +1.6 4,842,249 + +3.4 4,842,249 + -2.0 4,842,249 + +3.1 4,842,249 + -2.1 4,842,249 + +0.7 4,842,249 + +0.2 4,842,249 + +0.9 4,842,250 - -0.5 4,842,250 - +1.7 4,842,250 - -0.6 4,842,257 + -0.4 4,842,258 - +2.1 4,842,280 + +3.4 4,842,280 + +3.4 4,842,280 + -0.9 4,842,281 - +2.7 4,842,281 - +2.7 4,842,408 + -1.7 4,842,409 - +3.4 4,842,427 + -0.8 4,842,427 + +4.1 4,842,427 + -0.4 4,842,551 + -1.1 4,842,552 - -3.0 4,842,552 - -1.7 4,842,630 - Psyr_4060 0.12 -0.3 4,842,705 + Psyr_4060 0.16 -2.6 4,842,705 + Psyr_4060 0.16 +4.1 4,842,845 + Psyr_4060 0.22 +0.1 4,842,849 - Psyr_4060 0.22 -0.7 4,842,884 + Psyr_4060 0.24 +2.4 4,842,965 + Psyr_4060 0.28 +1.1 4,842,966 - Psyr_4060 0.28 -0.0 4,842,966 - Psyr_4060 0.28 -0.1 4,842,966 - Psyr_4060 0.28 -1.8 4,842,966 - Psyr_4060 0.28 +2.7 4,842,966 - Psyr_4060 0.28 +1.7 4,842,974 + Psyr_4060 0.28 +2.9 4,842,974 + Psyr_4060 0.28 +2.9 4,842,975 - Psyr_4060 0.28 +1.1 4,843,148 + Psyr_4060 0.37 +0.6 4,843,148 + Psyr_4060 0.37 +0.8 4,843,148 + Psyr_4060 0.37 -2.2 4,843,148 + Psyr_4060 0.37 -0.5 4,843,148 + Psyr_4060 0.37 +3.6 4,843,148 + Psyr_4060 0.37 -1.7 4,843,148 + Psyr_4060 0.37 +1.1 4,843,148 + Psyr_4060 0.37 +2.1 4,843,148 + Psyr_4060 0.37 -0.7 4,843,148 + Psyr_4060 0.37 +3.9 4,843,149 - Psyr_4060 0.37 +0.1 4,843,149 - Psyr_4060 0.37 +3.1 4,843,149 - Psyr_4060 0.37 -1.4 4,843,149 - Psyr_4060 0.37 -0.3 4,843,149 - Psyr_4060 0.37 +2.4 4,843,149 - Psyr_4060 0.37 +0.1 4,843,149 - Psyr_4060 0.37 -0.5 4,843,149 - Psyr_4060 0.37 +3.7 4,843,149 - Psyr_4060 0.37 +2.7 4,843,149 - Psyr_4060 0.37 -2.1 4,843,149 - Psyr_4060 0.37 +2.2 4,843,193 + Psyr_4060 0.39 -2.2 4,843,194 - Psyr_4060 0.39 -1.1 4,843,341 - Psyr_4060 0.46 +1.2 4,843,359 + Psyr_4060 0.47 -0.7 4,843,359 + Psyr_4060 0.47 -0.8 4,843,359 + Psyr_4060 0.47 +2.7 4,843,359 + Psyr_4060 0.47 -1.8 4,843,360 - Psyr_4060 0.47 -0.7 4,843,360 - Psyr_4060 0.47 +4.3 4,843,360 - Psyr_4060 0.47 -1.2 4,843,398 + Psyr_4060 0.48 +2.4 4,843,398 + Psyr_4060 0.48 -3.2 4,843,670 + Psyr_4060 0.61 -2.1 4,843,670 + Psyr_4060 0.61 +0.3 4,843,670 + Psyr_4060 0.61 +3.3 4,843,671 - Psyr_4060 0.61 +2.7 4,843,671 - Psyr_4060 0.61 +0.5 4,843,671 - Psyr_4060 0.61 +2.1 4,843,671 - Psyr_4060 0.61 -1.5 4,843,671 - Psyr_4060 0.61 -2.2 4,843,671 - Psyr_4060 0.61 -1.3 4,843,671 - Psyr_4060 0.61 +2.1 4,843,671 - Psyr_4060 0.61 -2.4 4,843,755 - Psyr_4060 0.65 +3.4 4,843,755 - Psyr_4060 0.65 -0.6 4,843,755 - Psyr_4060 0.65 +0.5 4,843,755 - Psyr_4060 0.65 +0.9 4,843,763 + Psyr_4060 0.66 -2.2 4,843,764 - Psyr_4060 0.66 -0.1 4,843,764 - Psyr_4060 0.66 -1.9 4,843,860 + Psyr_4060 0.70 +3.9 4,843,860 + Psyr_4060 0.70 -1.4 4,843,860 + Psyr_4060 0.70 -2.1 4,843,860 + Psyr_4060 0.70 -3.1 4,843,860 + Psyr_4060 0.70 -0.0 4,843,860 + Psyr_4060 0.70 +2.1 4,843,860 + Psyr_4060 0.70 +0.1 4,843,860 + Psyr_4060 0.70 +1.4 4,843,860 + Psyr_4060 0.70 +1.7 4,843,860 + Psyr_4060 0.70 +1.7 4,843,860 + Psyr_4060 0.70 +0.5 4,843,860 + Psyr_4060 0.70 +0.0 4,843,861 - Psyr_4060 0.70 +3.3 4,843,861 - Psyr_4060 0.70 -0.4 4,843,861 - Psyr_4060 0.70 +1.7 4,844,052 - Psyr_4060 0.79 -1.1 4,844,110 + Psyr_4060 0.82 -1.3 4,844,110 + Psyr_4060 0.82 +2.9 4,844,110 + Psyr_4060 0.82 +1.5 4,844,110 + Psyr_4060 0.82 -2.2 4,844,111 - Psyr_4060 0.82 -0.5 4,844,111 - Psyr_4060 0.82 -0.3 4,844,111 - Psyr_4060 0.82 +3.4 4,844,111 - Psyr_4060 0.82 -2.7 4,844,111 - Psyr_4060 0.82 +2.7 4,844,205 - Psyr_4060 0.86 -1.8 4,844,284 + -0.5 4,844,284 + +2.4 4,844,284 + -2.1 4,844,285 - +3.9 4,844,285 - -1.2 4,844,285 - +3.8 4,844,285 - +3.9 4,844,287 + +0.5 4,844,372 + -1.3 4,844,372 + +2.1 4,844,372 + +3.8 4,844,372 + -3.0 4,844,372 + -0.0 4,844,372 + -0.8 4,844,372 + -1.0 4,844,372 + -0.4 4,844,373 - +3.1 4,844,373 - +2.4 4,844,373 - +3.4 4,844,373 - +0.1 4,844,373 - +0.7 4,844,373 - +1.7 4,844,373 - -1.3 4,844,373 - -1.2 4,844,373 - +0.1 4,844,408 + +0.7 4,844,409 - -0.9 4,844,415 - -1.2 4,844,451 - +0.7 4,844,451 - -0.9 4,844,451 - +0.1 4,844,451 - +0.1 4,844,540 + +2.4 4,844,540 + -2.4 4,844,540 + -1.4 4,844,540 + +3.8 4,844,540 + +3.4 4,844,541 - -0.3 4,844,541 - +2.9 4,844,680 + -2.6 4,844,681 - -2.6 4,844,681 - +4.2 4,844,681 - -3.6 4,844,699 - +1.7 4,844,716 + -1.0 4,844,717 - +3.4 4,844,894 + +1.7 4,844,894 + Psyr_4061 0.16 -2.1 4,844,895 - Psyr_4061 0.16 +0.3 4,844,895 - Psyr_4061 0.16 -4.1 4,844,895 - Psyr_4061 0.16 +1.0 4,844,895 - Psyr_4061 0.16 +0.9 4,844,895 - Psyr_4061 0.16 -0.1 4,845,039 - Psyr_4061 0.27 +3.6 4,845,039 - Psyr_4061 0.27 +2.4 4,845,039 - Psyr_4061 0.27 +0.1 4,845,134 + Psyr_4061 0.34 -0.8 4,845,134 + Psyr_4061 0.34 +1.1 4,845,134 + Psyr_4061 0.34 -2.1 4,845,134 + Psyr_4061 0.34 -1.7 4,845,149 + Psyr_4061 0.35 -1.8 4,845,440 + Psyr_4061 0.56 -0.6 4,845,441 - Psyr_4061 0.56 -1.0
Or see this region's nucleotide sequence