Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3926

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3925 and Psyr_3926 are separated by 87 nucleotidesPsyr_3926 and Psyr_3927 overlap by 4 nucleotidesPsyr_3927 and Psyr_3928 are separated by 15 nucleotides Psyr_3925: Psyr_3925 - conserved hypothetical protein, at 4,667,696 to 4,670,833 _3925 Psyr_3926: Psyr_3926 - transcriptional regulator, PadR family, at 4,670,921 to 4,671,511 _3926 Psyr_3927: Psyr_3927 - Siderophore-interacting protein, at 4,671,508 to 4,672,275 _3927 Psyr_3928: Psyr_3928 - conserved domain protein, at 4,672,291 to 4,672,950 _3928 Position (kb) 4670 4671 4672Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4669.949 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.973 kb on + strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.974 kb on - strand, within Psyr_3925at 4669.994 kb on + strand, within Psyr_3925at 4669.994 kb on + strand, within Psyr_3925at 4669.994 kb on + strand, within Psyr_3925at 4669.995 kb on - strand, within Psyr_3925at 4669.995 kb on - strand, within Psyr_3925at 4669.995 kb on - strand, within Psyr_3925at 4670.108 kb on + strand, within Psyr_3925at 4670.109 kb on - strand, within Psyr_3925at 4670.378 kb on + strand, within Psyr_3925at 4670.378 kb on + strand, within Psyr_3925at 4670.379 kb on - strand, within Psyr_3925at 4670.642 kb on + strandat 4670.642 kb on + strandat 4670.643 kb on - strandat 4670.643 kb on - strandat 4670.769 kb on - strandat 4670.893 kb on - strandat 4670.903 kb on + strandat 4670.932 kb on + strandat 4670.932 kb on + strandat 4670.933 kb on - strandat 4671.070 kb on - strand, within Psyr_3926at 4671.166 kb on + strand, within Psyr_3926at 4671.171 kb on - strand, within Psyr_3926at 4671.171 kb on - strand, within Psyr_3926at 4671.239 kb on + strand, within Psyr_3926at 4671.240 kb on - strand, within Psyr_3926at 4671.610 kb on - strand, within Psyr_3927at 4671.928 kb on + strand, within Psyr_3927at 4671.928 kb on + strand, within Psyr_3927at 4671.928 kb on + strand, within Psyr_3927at 4671.929 kb on - strand, within Psyr_3927at 4671.929 kb on - strand, within Psyr_3927at 4671.929 kb on - strand, within Psyr_3927at 4671.929 kb on - strand, within Psyr_3927at 4671.929 kb on - strand, within Psyr_3927at 4671.929 kb on - strand, within Psyr_3927at 4671.929 kb on - strand, within Psyr_3927at 4672.085 kb on + strand, within Psyr_3927at 4672.147 kb on + strand, within Psyr_3927at 4672.148 kb on - strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.187 kb on + strand, within Psyr_3927at 4672.188 kb on - strand, within Psyr_3927at 4672.188 kb on - strand, within Psyr_3927at 4672.188 kb on - strand, within Psyr_3927at 4672.196 kb on + strand, within Psyr_3927at 4672.197 kb on - strand, within Psyr_3927at 4672.405 kb on - strand, within Psyr_3928at 4672.430 kb on + strand, within Psyr_3928at 4672.431 kb on - strand, within Psyr_3928at 4672.431 kb on - strand, within Psyr_3928at 4672.431 kb on - strand, within Psyr_3928at 4672.463 kb on + strand, within Psyr_3928at 4672.464 kb on - strand, within Psyr_3928at 4672.464 kb on - strand, within Psyr_3928at 4672.464 kb on - strand, within Psyr_3928at 4672.464 kb on - strand, within Psyr_3928at 4672.464 kb on - strand, within Psyr_3928at 4672.472 kb on + strand, within Psyr_3928at 4672.472 kb on + strand, within Psyr_3928at 4672.472 kb on + strand, within Psyr_3928at 4672.472 kb on + strand, within Psyr_3928at 4672.473 kb on - strand, within Psyr_3928at 4672.484 kb on + strand, within Psyr_3928at 4672.501 kb on + strand, within Psyr_3928at 4672.501 kb on + strand, within Psyr_3928at 4672.502 kb on - strand, within Psyr_3928

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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4,669,949 + Psyr_3925 0.72 +3.2
4,669,973 + Psyr_3925 0.73 +4.0
4,669,973 + Psyr_3925 0.73 -0.7
4,669,973 + Psyr_3925 0.73 -2.1
4,669,973 + Psyr_3925 0.73 +1.0
4,669,973 + Psyr_3925 0.73 -1.2
4,669,973 + Psyr_3925 0.73 -2.5
4,669,973 + Psyr_3925 0.73 +2.8
4,669,973 + Psyr_3925 0.73 +3.0
4,669,973 + Psyr_3925 0.73 +2.4
4,669,973 + Psyr_3925 0.73 +0.9
4,669,973 + Psyr_3925 0.73 +2.0
4,669,973 + Psyr_3925 0.73 +1.2
4,669,974 - Psyr_3925 0.73 +2.8
4,669,974 - Psyr_3925 0.73 +2.7
4,669,974 - Psyr_3925 0.73 +2.6
4,669,974 - Psyr_3925 0.73 +3.0
4,669,974 - Psyr_3925 0.73 +0.2
4,669,974 - Psyr_3925 0.73 +2.0
4,669,974 - Psyr_3925 0.73 +2.0
4,669,994 + Psyr_3925 0.73 +0.7
4,669,994 + Psyr_3925 0.73 -0.4
4,669,994 + Psyr_3925 0.73 -2.5
4,669,995 - Psyr_3925 0.73 +0.3
4,669,995 - Psyr_3925 0.73 -1.4
4,669,995 - Psyr_3925 0.73 +0.5
4,670,108 + Psyr_3925 0.77 +2.3
4,670,109 - Psyr_3925 0.77 -1.3
4,670,378 + Psyr_3925 0.85 +5.0
4,670,378 + Psyr_3925 0.85 +3.5
4,670,379 - Psyr_3925 0.86 +1.5
4,670,642 + +1.6
4,670,642 + +0.1
4,670,643 - +2.6
4,670,643 - +2.0
4,670,769 - +1.6
4,670,893 - +2.6
4,670,903 + -1.7
4,670,932 + +2.6
4,670,932 + -0.8
4,670,933 - +2.3
4,671,070 - Psyr_3926 0.25 -3.2
4,671,166 + Psyr_3926 0.41 -3.8
4,671,171 - Psyr_3926 0.42 -3.1
4,671,171 - Psyr_3926 0.42 +2.8
4,671,239 + Psyr_3926 0.54 -1.5
4,671,240 - Psyr_3926 0.54 +2.8
4,671,610 - Psyr_3927 0.13 -0.4
4,671,928 + Psyr_3927 0.55 -0.2
4,671,928 + Psyr_3927 0.55 +3.2
4,671,928 + Psyr_3927 0.55 +2.6
4,671,929 - Psyr_3927 0.55 -1.0
4,671,929 - Psyr_3927 0.55 -0.8
4,671,929 - Psyr_3927 0.55 -0.8
4,671,929 - Psyr_3927 0.55 +1.0
4,671,929 - Psyr_3927 0.55 -1.2
4,671,929 - Psyr_3927 0.55 -1.6
4,671,929 - Psyr_3927 0.55 -1.2
4,672,085 + Psyr_3927 0.75 -2.0
4,672,147 + Psyr_3927 0.83 -1.3
4,672,148 - Psyr_3927 0.83 +0.6
4,672,187 + Psyr_3927 0.88 +3.6
4,672,187 + Psyr_3927 0.88 +2.0
4,672,187 + Psyr_3927 0.88 -1.6
4,672,187 + Psyr_3927 0.88 +4.1
4,672,187 + Psyr_3927 0.88 +3.0
4,672,187 + Psyr_3927 0.88 +1.6
4,672,187 + Psyr_3927 0.88 +1.6
4,672,187 + Psyr_3927 0.88 -1.9
4,672,188 - Psyr_3927 0.89 +3.0
4,672,188 - Psyr_3927 0.89 +0.0
4,672,188 - Psyr_3927 0.89 -2.1
4,672,196 + Psyr_3927 0.90 -2.0
4,672,197 - Psyr_3927 0.90 +3.3
4,672,405 - Psyr_3928 0.17 +4.2
4,672,430 + Psyr_3928 0.21 +3.0
4,672,431 - Psyr_3928 0.21 +0.6
4,672,431 - Psyr_3928 0.21 -0.1
4,672,431 - Psyr_3928 0.21 -0.5
4,672,463 + Psyr_3928 0.26 +0.2
4,672,464 - Psyr_3928 0.26 -1.0
4,672,464 - Psyr_3928 0.26 +1.6
4,672,464 - Psyr_3928 0.26 +0.5
4,672,464 - Psyr_3928 0.26 -1.6
4,672,464 - Psyr_3928 0.26 +2.8
4,672,472 + Psyr_3928 0.27 -1.2
4,672,472 + Psyr_3928 0.27 -1.8
4,672,472 + Psyr_3928 0.27 +2.3
4,672,472 + Psyr_3928 0.27 +0.3
4,672,473 - Psyr_3928 0.28 -1.6
4,672,484 + Psyr_3928 0.29 -1.0
4,672,501 + Psyr_3928 0.32 +3.5
4,672,501 + Psyr_3928 0.32 -0.1
4,672,502 - Psyr_3928 0.32 -0.5

Or see this region's nucleotide sequence