Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3840

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3839 and Psyr_3840 are separated by 218 nucleotidesPsyr_3840 and Psyr_3841 are separated by 100 nucleotidesPsyr_3841 and Psyr_3842 are separated by 233 nucleotides Psyr_3839: Psyr_3839 - type III helper protein HopAK1, at 4,574,582 to 4,576,213 _3839 Psyr_3840: Psyr_3840 - conserved hypothetical protein, at 4,576,432 to 4,576,590 _3840 Psyr_3841: Psyr_3841 - conserved hypothetical protein, at 4,576,691 to 4,577,032 _3841 Psyr_3842: Psyr_3842 - SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit, at 4,577,266 to 4,580,112 _3842 Position (kb) 4576 4577Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4575.527 kb on + strand, within Psyr_3839at 4575.527 kb on + strand, within Psyr_3839at 4575.527 kb on + strand, within Psyr_3839at 4575.527 kb on + strand, within Psyr_3839at 4575.528 kb on - strand, within Psyr_3839at 4575.528 kb on - strand, within Psyr_3839at 4575.528 kb on - strand, within Psyr_3839at 4575.528 kb on - strand, within Psyr_3839at 4575.528 kb on - strand, within Psyr_3839at 4575.528 kb on - strand, within Psyr_3839at 4575.665 kb on + strand, within Psyr_3839at 4575.665 kb on + strand, within Psyr_3839at 4575.665 kb on + strand, within Psyr_3839at 4575.666 kb on - strand, within Psyr_3839at 4575.666 kb on - strand, within Psyr_3839at 4575.666 kb on - strand, within Psyr_3839at 4575.666 kb on - strand, within Psyr_3839at 4575.713 kb on + strand, within Psyr_3839at 4575.713 kb on + strand, within Psyr_3839at 4575.713 kb on + strand, within Psyr_3839at 4575.713 kb on + strand, within Psyr_3839at 4575.713 kb on + strand, within Psyr_3839at 4575.713 kb on + strand, within Psyr_3839at 4575.713 kb on + strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.714 kb on - strand, within Psyr_3839at 4575.755 kb on - strand, within Psyr_3839at 4575.755 kb on - strand, within Psyr_3839at 4575.824 kb on + strand, within Psyr_3839at 4575.824 kb on + strand, within Psyr_3839at 4575.825 kb on - strand, within Psyr_3839at 4575.825 kb on - strand, within Psyr_3839at 4575.995 kb on + strand, within Psyr_3839at 4575.995 kb on + strand, within Psyr_3839at 4575.995 kb on + strand, within Psyr_3839at 4575.995 kb on + strand, within Psyr_3839at 4575.995 kb on + strand, within Psyr_3839at 4575.995 kb on + strand, within Psyr_3839at 4575.995 kb on + strand, within Psyr_3839at 4575.996 kb on - strand, within Psyr_3839at 4575.996 kb on - strand, within Psyr_3839at 4575.996 kb on - strand, within Psyr_3839at 4576.055 kb on + strandat 4576.056 kb on - strandat 4576.137 kb on - strandat 4576.137 kb on - strandat 4576.175 kb on + strandat 4576.350 kb on - strandat 4576.393 kb on + strandat 4576.444 kb on - strandat 4576.504 kb on + strand, within Psyr_3840at 4576.504 kb on + strand, within Psyr_3840at 4576.504 kb on + strand, within Psyr_3840at 4576.505 kb on - strand, within Psyr_3840at 4576.505 kb on - strand, within Psyr_3840at 4576.505 kb on - strand, within Psyr_3840at 4576.505 kb on - strand, within Psyr_3840at 4576.505 kb on - strand, within Psyr_3840at 4576.505 kb on - strand, within Psyr_3840at 4576.540 kb on - strand, within Psyr_3840at 4576.628 kb on - strandat 4576.891 kb on + strand, within Psyr_3841at 4576.892 kb on - strand, within Psyr_3841at 4576.892 kb on - strand, within Psyr_3841at 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.020 kb on + strandat 4577.021 kb on - strandat 4577.021 kb on - strandat 4577.021 kb on - strandat 4577.021 kb on - strandat 4577.021 kb on - strandat 4577.021 kb on - strandat 4577.021 kb on - strandat 4577.021 kb on - strandat 4577.038 kb on + strandat 4577.039 kb on - strandat 4577.101 kb on + strandat 4577.109 kb on + strandat 4577.109 kb on + strandat 4577.110 kb on - strandat 4577.111 kb on + strandat 4577.111 kb on + strandat 4577.111 kb on + strandat 4577.112 kb on - strandat 4577.112 kb on - strandat 4577.112 kb on - strandat 4577.141 kb on + strandat 4577.141 kb on + strandat 4577.141 kb on + strandat 4577.142 kb on - strandat 4577.142 kb on - strandat 4577.142 kb on - strandat 4577.234 kb on + strandat 4577.234 kb on + strandat 4577.235 kb on - strandat 4577.235 kb on - strandat 4577.278 kb on + strandat 4577.278 kb on + strandat 4577.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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4,575,527 + Psyr_3839 0.58 +2.8
4,575,527 + Psyr_3839 0.58 -2.0
4,575,527 + Psyr_3839 0.58 -2.8
4,575,527 + Psyr_3839 0.58 +3.7
4,575,528 - Psyr_3839 0.58 +0.4
4,575,528 - Psyr_3839 0.58 -0.7
4,575,528 - Psyr_3839 0.58 +1.4
4,575,528 - Psyr_3839 0.58 -0.8
4,575,528 - Psyr_3839 0.58 +0.9
4,575,528 - Psyr_3839 0.58 +2.6
4,575,665 + Psyr_3839 0.66 +1.6
4,575,665 + Psyr_3839 0.66 -0.3
4,575,665 + Psyr_3839 0.66 -0.6
4,575,666 - Psyr_3839 0.66 -1.4
4,575,666 - Psyr_3839 0.66 +0.5
4,575,666 - Psyr_3839 0.66 +2.8
4,575,666 - Psyr_3839 0.66 +2.3
4,575,713 + Psyr_3839 0.69 +1.0
4,575,713 + Psyr_3839 0.69 -2.9
4,575,713 + Psyr_3839 0.69 +2.8
4,575,713 + Psyr_3839 0.69 -0.0
4,575,713 + Psyr_3839 0.69 -1.3
4,575,713 + Psyr_3839 0.69 +0.6
4,575,713 + Psyr_3839 0.69 +3.1
4,575,714 - Psyr_3839 0.69 -1.3
4,575,714 - Psyr_3839 0.69 -1.8
4,575,714 - Psyr_3839 0.69 +2.6
4,575,714 - Psyr_3839 0.69 -0.0
4,575,714 - Psyr_3839 0.69 -0.9
4,575,714 - Psyr_3839 0.69 +1.7
4,575,714 - Psyr_3839 0.69 -0.7
4,575,714 - Psyr_3839 0.69 -0.3
4,575,714 - Psyr_3839 0.69 -0.0
4,575,755 - Psyr_3839 0.72 -0.2
4,575,755 - Psyr_3839 0.72 +2.0
4,575,824 + Psyr_3839 0.76 +1.2
4,575,824 + Psyr_3839 0.76 +0.1
4,575,825 - Psyr_3839 0.76 -0.6
4,575,825 - Psyr_3839 0.76 -2.6
4,575,995 + Psyr_3839 0.87 -0.2
4,575,995 + Psyr_3839 0.87 -1.8
4,575,995 + Psyr_3839 0.87 +3.3
4,575,995 + Psyr_3839 0.87 -0.6
4,575,995 + Psyr_3839 0.87 +0.6
4,575,995 + Psyr_3839 0.87 -0.8
4,575,995 + Psyr_3839 0.87 -0.9
4,575,996 - Psyr_3839 0.87 +0.2
4,575,996 - Psyr_3839 0.87 +3.6
4,575,996 - Psyr_3839 0.87 -0.9
4,576,055 + +4.0
4,576,056 - +2.3
4,576,137 - -0.7
4,576,137 - +0.6
4,576,175 + -0.5
4,576,350 - -0.4
4,576,393 + +2.8
4,576,444 - -0.1
4,576,504 + Psyr_3840 0.45 +2.0
4,576,504 + Psyr_3840 0.45 +4.0
4,576,504 + Psyr_3840 0.45 -0.6
4,576,505 - Psyr_3840 0.46 -0.8
4,576,505 - Psyr_3840 0.46 -3.7
4,576,505 - Psyr_3840 0.46 -1.5
4,576,505 - Psyr_3840 0.46 +1.0
4,576,505 - Psyr_3840 0.46 -2.7
4,576,505 - Psyr_3840 0.46 -2.6
4,576,540 - Psyr_3840 0.68 -1.9
4,576,628 - +3.7
4,576,891 + Psyr_3841 0.58 -0.0
4,576,892 - Psyr_3841 0.59 +3.9
4,576,892 - Psyr_3841 0.59 +1.6
4,577,020 + +4.4
4,577,020 + -1.0
4,577,020 + +2.0
4,577,020 + -1.8
4,577,020 + -2.2
4,577,020 + -1.8
4,577,020 + +1.6
4,577,020 + +1.2
4,577,020 + +1.1
4,577,020 + -1.7
4,577,021 - +2.3
4,577,021 - -0.2
4,577,021 - -1.0
4,577,021 - +1.6
4,577,021 - +2.6
4,577,021 - +3.8
4,577,021 - +0.8
4,577,021 - -0.0
4,577,038 + +2.8
4,577,039 - -0.7
4,577,101 + -1.7
4,577,109 + +1.0
4,577,109 + +3.8
4,577,110 - -0.6
4,577,111 + -1.0
4,577,111 + +3.0
4,577,111 + +3.1
4,577,112 - -1.1
4,577,112 - -2.0
4,577,112 - +2.3
4,577,141 + +0.1
4,577,141 + +0.3
4,577,141 + -0.0
4,577,142 - +0.7
4,577,142 - +2.0
4,577,142 - -2.0
4,577,234 + +3.0
4,577,234 + +0.1
4,577,235 - -3.6
4,577,235 - -1.5
4,577,278 + +2.6
4,577,278 + +1.0
4,577,279 - +3.9

Or see this region's nucleotide sequence