Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3828

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3827 and Psyr_3828 are separated by 525 nucleotidesPsyr_3828 and Psyr_3829 are separated by 39 nucleotides Psyr_3827: Psyr_3827 - ABC transporter, transmembrane region:ABC transporter, at 4,555,006 to 4,556,838 _3827 Psyr_3828: Psyr_3828 - Protein of unknown function DUF482, at 4,557,364 to 4,558,491 _3828 Psyr_3829: Psyr_3829 - Leucine-rich repeat protein, at 4,558,531 to 4,563,426 _3829 Position (kb) 4557 4558 4559Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4556.377 kb on + strand, within Psyr_3827at 4556.377 kb on + strand, within Psyr_3827at 4556.378 kb on - strand, within Psyr_3827at 4556.378 kb on - strand, within Psyr_3827at 4556.378 kb on - strand, within Psyr_3827at 4556.538 kb on + strand, within Psyr_3827at 4556.788 kb on + strandat 4556.788 kb on + strandat 4556.789 kb on - strandat 4556.826 kb on - strandat 4556.900 kb on + strandat 4556.901 kb on - strandat 4556.952 kb on + strandat 4556.952 kb on + strandat 4556.952 kb on + strandat 4556.952 kb on + strandat 4557.040 kb on + strandat 4557.041 kb on - strandat 4557.128 kb on + strandat 4557.195 kb on + strandat 4557.195 kb on + strandat 4557.195 kb on + strandat 4557.195 kb on + strandat 4557.196 kb on - strandat 4557.196 kb on - strandat 4557.196 kb on - strandat 4557.196 kb on - strandat 4557.217 kb on - strandat 4557.273 kb on + strandat 4557.273 kb on + strandat 4557.273 kb on + strandat 4557.273 kb on + strandat 4557.274 kb on - strandat 4557.274 kb on - strandat 4557.274 kb on - strandat 4557.274 kb on - strandat 4557.294 kb on + strandat 4557.294 kb on + strandat 4557.294 kb on + strandat 4557.295 kb on - strandat 4557.295 kb on - strandat 4557.410 kb on + strandat 4557.581 kb on + strand, within Psyr_3828at 4557.581 kb on + strand, within Psyr_3828at 4557.581 kb on + strand, within Psyr_3828at 4557.581 kb on + strand, within Psyr_3828at 4557.581 kb on + strand, within Psyr_3828at 4557.581 kb on + strand, within Psyr_3828at 4557.581 kb on + strand, within Psyr_3828at 4557.582 kb on - strand, within Psyr_3828at 4557.596 kb on + strand, within Psyr_3828at 4557.597 kb on - strand, within Psyr_3828at 4557.656 kb on + strand, within Psyr_3828at 4557.782 kb on + strand, within Psyr_3828at 4557.807 kb on - strand, within Psyr_3828at 4557.807 kb on - strand, within Psyr_3828at 4557.807 kb on - strand, within Psyr_3828at 4557.807 kb on - strand, within Psyr_3828at 4557.807 kb on - strand, within Psyr_3828at 4557.818 kb on + strand, within Psyr_3828at 4557.818 kb on + strand, within Psyr_3828at 4557.819 kb on - strand, within Psyr_3828at 4557.828 kb on - strand, within Psyr_3828at 4557.828 kb on - strand, within Psyr_3828at 4558.103 kb on + strand, within Psyr_3828at 4558.103 kb on + strand, within Psyr_3828at 4558.104 kb on - strand, within Psyr_3828at 4558.104 kb on - strand, within Psyr_3828at 4558.104 kb on - strand, within Psyr_3828at 4558.104 kb on - strand, within Psyr_3828at 4558.104 kb on - strand, within Psyr_3828at 4558.211 kb on + strand, within Psyr_3828at 4558.212 kb on - strand, within Psyr_3828at 4558.262 kb on + strand, within Psyr_3828at 4558.262 kb on + strand, within Psyr_3828at 4558.262 kb on + strand, within Psyr_3828at 4558.262 kb on + strand, within Psyr_3828at 4558.430 kb on - strandat 4558.477 kb on + strandat 4558.640 kb on + strandat 4558.640 kb on + strandat 4558.641 kb on - strandat 4558.748 kb on + strandat 4558.749 kb on - strandat 4558.749 kb on - strandat 4558.749 kb on - strandat 4558.797 kb on + strandat 4558.936 kb on + strandat 4558.936 kb on + strandat 4558.936 kb on + strandat 4558.936 kb on + strandat 4558.937 kb on - strandat 4558.937 kb on - strandat 4558.951 kb on + strandat 4558.951 kb on + strandat 4558.951 kb on + strandat 4558.951 kb on + strandat 4558.951 kb on + strandat 4558.952 kb on - strandat 4558.952 kb on - strandat 4559.105 kb on - strand, within Psyr_3829at 4559.105 kb on - strand, within Psyr_3829at 4559.174 kb on - strand, within Psyr_3829at 4559.174 kb on - strand, within Psyr_3829at 4559.193 kb on + strand, within Psyr_3829at 4559.193 kb on + strand, within Psyr_3829at 4559.193 kb on + strand, within Psyr_3829at 4559.193 kb on + strand, within Psyr_3829at 4559.194 kb on - strand, within Psyr_3829at 4559.194 kb on - strand, within Psyr_3829at 4559.212 kb on + strand, within Psyr_3829at 4559.212 kb on + strand, within Psyr_3829at 4559.271 kb on - strand, within Psyr_3829at 4559.304 kb on + strand, within Psyr_3829

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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4,556,377 + Psyr_3827 0.75 +2.0
4,556,377 + Psyr_3827 0.75 -0.2
4,556,378 - Psyr_3827 0.75 -0.0
4,556,378 - Psyr_3827 0.75 +0.0
4,556,378 - Psyr_3827 0.75 -1.7
4,556,538 + Psyr_3827 0.84 -2.6
4,556,788 + +1.0
4,556,788 + -1.2
4,556,789 - +2.6
4,556,826 - +2.0
4,556,900 + +3.7
4,556,901 - +3.4
4,556,952 + -1.6
4,556,952 + -1.6
4,556,952 + -0.0
4,556,952 + -1.2
4,557,040 + +0.5
4,557,041 - +1.6
4,557,128 + +2.8
4,557,195 + +1.3
4,557,195 + -0.2
4,557,195 + +1.0
4,557,195 + -0.0
4,557,196 - +3.8
4,557,196 - +2.3
4,557,196 - +2.0
4,557,196 - +0.9
4,557,217 - -2.9
4,557,273 + +2.6
4,557,273 + +4.6
4,557,273 + -1.6
4,557,273 + -2.0
4,557,274 - +1.0
4,557,274 - -2.0
4,557,274 - -3.5
4,557,274 - -0.4
4,557,294 + +4.2
4,557,294 + +3.9
4,557,294 + -0.3
4,557,295 - +1.0
4,557,295 - -0.4
4,557,410 + +2.3
4,557,581 + Psyr_3828 0.19 -0.8
4,557,581 + Psyr_3828 0.19 +0.4
4,557,581 + Psyr_3828 0.19 +3.6
4,557,581 + Psyr_3828 0.19 -0.7
4,557,581 + Psyr_3828 0.19 +1.3
4,557,581 + Psyr_3828 0.19 +2.6
4,557,581 + Psyr_3828 0.19 -0.8
4,557,582 - Psyr_3828 0.19 +3.8
4,557,596 + Psyr_3828 0.21 +3.1
4,557,597 - Psyr_3828 0.21 +1.0
4,557,656 + Psyr_3828 0.26 -3.3
4,557,782 + Psyr_3828 0.37 +2.0
4,557,807 - Psyr_3828 0.39 -1.5
4,557,807 - Psyr_3828 0.39 -2.3
4,557,807 - Psyr_3828 0.39 -2.9
4,557,807 - Psyr_3828 0.39 +3.4
4,557,807 - Psyr_3828 0.39 -0.0
4,557,818 + Psyr_3828 0.40 -1.4
4,557,818 + Psyr_3828 0.40 +1.0
4,557,819 - Psyr_3828 0.40 +3.7
4,557,828 - Psyr_3828 0.41 -0.3
4,557,828 - Psyr_3828 0.41 +1.0
4,558,103 + Psyr_3828 0.66 +2.6
4,558,103 + Psyr_3828 0.66 +1.0
4,558,104 - Psyr_3828 0.66 +3.7
4,558,104 - Psyr_3828 0.66 +1.0
4,558,104 - Psyr_3828 0.66 -0.3
4,558,104 - Psyr_3828 0.66 +0.2
4,558,104 - Psyr_3828 0.66 +3.9
4,558,211 + Psyr_3828 0.75 +3.4
4,558,212 - Psyr_3828 0.75 +3.0
4,558,262 + Psyr_3828 0.80 +3.3
4,558,262 + Psyr_3828 0.80 -0.4
4,558,262 + Psyr_3828 0.80 +1.6
4,558,262 + Psyr_3828 0.80 -1.4
4,558,430 - +4.0
4,558,477 + +2.6
4,558,640 + -1.8
4,558,640 + -4.1
4,558,641 - -3.0
4,558,748 + +2.8
4,558,749 - +2.3
4,558,749 - -0.0
4,558,749 - -1.2
4,558,797 + -3.7
4,558,936 + -0.5
4,558,936 + +2.8
4,558,936 + +1.0
4,558,936 + -2.7
4,558,937 - -2.6
4,558,937 - +3.3
4,558,951 + -1.8
4,558,951 + +1.6
4,558,951 + -0.0
4,558,951 + +3.1
4,558,951 + +0.5
4,558,952 - -2.0
4,558,952 - -0.6
4,559,105 - Psyr_3829 0.12 +3.6
4,559,105 - Psyr_3829 0.12 +3.1
4,559,174 - Psyr_3829 0.13 +3.0
4,559,174 - Psyr_3829 0.13 +3.6
4,559,193 + Psyr_3829 0.14 -2.4
4,559,193 + Psyr_3829 0.14 -1.2
4,559,193 + Psyr_3829 0.14 +1.0
4,559,193 + Psyr_3829 0.14 +3.4
4,559,194 - Psyr_3829 0.14 +2.0
4,559,194 - Psyr_3829 0.14 +0.7
4,559,212 + Psyr_3829 0.14 +1.0
4,559,212 + Psyr_3829 0.14 +1.0
4,559,271 - Psyr_3829 0.15 +2.8
4,559,304 + Psyr_3829 0.16 -3.7

Or see this region's nucleotide sequence