Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3825 and Psyr_3826 are separated by 233 nucleotides Psyr_3826 and Psyr_3827 are separated by 101 nucleotides Psyr_3827 and Psyr_3828 are separated by 525 nucleotides
Psyr_3825: Psyr_3825 - transcriptional regulator, LysR family, at 4,553,184 to 4,554,107
_3825
Psyr_3826: Psyr_3826 - Peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 4,554,341 to 4,554,904
_3826
Psyr_3827: Psyr_3827 - ABC transporter, transmembrane region:ABC transporter, at 4,555,006 to 4,556,838
_3827
Psyr_3828: Psyr_3828 - Protein of unknown function DUF482, at 4,557,364 to 4,558,491
_3828
Position (kb) 4555
4556
4557 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4554.264 kb on - strand at 4554.264 kb on - strand at 4554.293 kb on - strand at 4554.314 kb on - strand at 4554.320 kb on + strand at 4554.320 kb on + strand at 4554.321 kb on - strand at 4554.321 kb on - strand at 4554.506 kb on + strand, within Psyr_3826 at 4554.506 kb on + strand, within Psyr_3826 at 4554.507 kb on - strand, within Psyr_3826 at 4554.524 kb on + strand, within Psyr_3826 at 4554.524 kb on + strand, within Psyr_3826 at 4554.525 kb on - strand, within Psyr_3826 at 4554.679 kb on + strand, within Psyr_3826 at 4554.679 kb on + strand, within Psyr_3826 at 4554.680 kb on - strand, within Psyr_3826 at 4554.835 kb on + strand, within Psyr_3826 at 4554.968 kb on + strand at 4554.968 kb on + strand at 4554.968 kb on + strand at 4554.968 kb on + strand at 4554.969 kb on - strand at 4555.039 kb on - strand at 4555.090 kb on + strand at 4555.090 kb on + strand at 4555.091 kb on - strand at 4555.091 kb on - strand at 4555.091 kb on - strand at 4555.096 kb on + strand at 4555.097 kb on - strand at 4555.097 kb on - strand at 4555.099 kb on + strand at 4555.099 kb on + strand at 4555.100 kb on - strand at 4555.112 kb on + strand at 4555.183 kb on + strand at 4555.184 kb on - strand at 4555.239 kb on + strand, within Psyr_3827 at 4555.322 kb on + strand, within Psyr_3827 at 4555.322 kb on + strand, within Psyr_3827 at 4555.323 kb on - strand, within Psyr_3827 at 4555.382 kb on + strand, within Psyr_3827 at 4555.383 kb on - strand, within Psyr_3827 at 4555.464 kb on - strand, within Psyr_3827 at 4555.609 kb on + strand, within Psyr_3827 at 4555.609 kb on + strand, within Psyr_3827 at 4555.609 kb on + strand, within Psyr_3827 at 4555.610 kb on - strand, within Psyr_3827 at 4555.691 kb on - strand, within Psyr_3827 at 4555.841 kb on + strand, within Psyr_3827 at 4555.841 kb on + strand, within Psyr_3827 at 4555.893 kb on + strand, within Psyr_3827 at 4555.893 kb on + strand, within Psyr_3827 at 4555.938 kb on + strand, within Psyr_3827 at 4556.022 kb on + strand, within Psyr_3827 at 4556.239 kb on + strand, within Psyr_3827 at 4556.239 kb on + strand, within Psyr_3827 at 4556.239 kb on + strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.240 kb on - strand, within Psyr_3827 at 4556.377 kb on + strand, within Psyr_3827 at 4556.377 kb on + strand, within Psyr_3827 at 4556.378 kb on - strand, within Psyr_3827 at 4556.378 kb on - strand, within Psyr_3827 at 4556.378 kb on - strand, within Psyr_3827 at 4556.538 kb on + strand, within Psyr_3827 at 4556.788 kb on + strand at 4556.788 kb on + strand at 4556.789 kb on - strand at 4556.826 kb on - strand at 4556.900 kb on + strand at 4556.901 kb on - strand at 4556.952 kb on + strand at 4556.952 kb on + strand at 4556.952 kb on + strand at 4556.952 kb on + strand at 4557.040 kb on + strand at 4557.041 kb on - strand at 4557.128 kb on + strand at 4557.195 kb on + strand at 4557.195 kb on + strand at 4557.195 kb on + strand at 4557.195 kb on + strand at 4557.196 kb on - strand at 4557.196 kb on - strand at 4557.196 kb on - strand at 4557.196 kb on - strand at 4557.217 kb on - strand at 4557.273 kb on + strand at 4557.273 kb on + strand at 4557.273 kb on + strand at 4557.273 kb on + strand at 4557.274 kb on - strand at 4557.274 kb on - strand at 4557.274 kb on - strand at 4557.274 kb on - strand at 4557.294 kb on + strand at 4557.294 kb on + strand at 4557.294 kb on + strand at 4557.295 kb on - strand at 4557.295 kb on - strand at 4557.410 kb on + strand at 4557.581 kb on + strand, within Psyr_3828 at 4557.581 kb on + strand, within Psyr_3828 at 4557.581 kb on + strand, within Psyr_3828 at 4557.581 kb on + strand, within Psyr_3828 at 4557.581 kb on + strand, within Psyr_3828 at 4557.581 kb on + strand, within Psyr_3828 at 4557.581 kb on + strand, within Psyr_3828 at 4557.582 kb on - strand, within Psyr_3828 at 4557.596 kb on + strand, within Psyr_3828 at 4557.597 kb on - strand, within Psyr_3828 at 4557.656 kb on + strand, within Psyr_3828 at 4557.782 kb on + strand, within Psyr_3828 at 4557.807 kb on - strand, within Psyr_3828 at 4557.807 kb on - strand, within Psyr_3828 at 4557.807 kb on - strand, within Psyr_3828 at 4557.807 kb on - strand, within Psyr_3828 at 4557.807 kb on - strand, within Psyr_3828 at 4557.818 kb on + strand, within Psyr_3828 at 4557.818 kb on + strand, within Psyr_3828 at 4557.819 kb on - strand, within Psyr_3828 at 4557.828 kb on - strand, within Psyr_3828 at 4557.828 kb on - strand, within Psyr_3828
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,554,264 - -1.2 4,554,264 - +0.7 4,554,293 - +3.3 4,554,314 - +2.6 4,554,320 + +3.0 4,554,320 + +3.3 4,554,321 - +0.8 4,554,321 - +3.3 4,554,506 + Psyr_3826 0.29 +2.8 4,554,506 + Psyr_3826 0.29 -3.2 4,554,507 - Psyr_3826 0.29 +3.0 4,554,524 + Psyr_3826 0.32 +3.1 4,554,524 + Psyr_3826 0.32 -1.8 4,554,525 - Psyr_3826 0.33 -1.6 4,554,679 + Psyr_3826 0.60 -2.0 4,554,679 + Psyr_3826 0.60 -0.9 4,554,680 - Psyr_3826 0.60 -0.0 4,554,835 + Psyr_3826 0.88 +3.0 4,554,968 + +3.1 4,554,968 + -0.0 4,554,968 + -0.3 4,554,968 + +3.8 4,554,969 - -4.2 4,555,039 - -0.4 4,555,090 + -2.0 4,555,090 + +0.4 4,555,091 - +4.4 4,555,091 - +2.6 4,555,091 - -0.2 4,555,096 + -0.0 4,555,097 - -0.0 4,555,097 - +3.9 4,555,099 + +2.3 4,555,099 + +3.3 4,555,100 - +2.6 4,555,112 + -2.0 4,555,183 + +2.8 4,555,184 - -0.0 4,555,239 + Psyr_3827 0.13 +3.9 4,555,322 + Psyr_3827 0.17 -0.2 4,555,322 + Psyr_3827 0.17 -0.3 4,555,323 - Psyr_3827 0.17 -1.6 4,555,382 + Psyr_3827 0.21 -1.5 4,555,383 - Psyr_3827 0.21 -0.9 4,555,464 - Psyr_3827 0.25 +2.6 4,555,609 + Psyr_3827 0.33 -2.5 4,555,609 + Psyr_3827 0.33 -1.7 4,555,609 + Psyr_3827 0.33 -1.0 4,555,610 - Psyr_3827 0.33 -1.0 4,555,691 - Psyr_3827 0.37 +2.6 4,555,841 + Psyr_3827 0.46 -1.9 4,555,841 + Psyr_3827 0.46 -1.0 4,555,893 + Psyr_3827 0.48 -0.4 4,555,893 + Psyr_3827 0.48 +0.1 4,555,938 + Psyr_3827 0.51 +3.8 4,556,022 + Psyr_3827 0.55 -1.7 4,556,239 + Psyr_3827 0.67 +2.8 4,556,239 + Psyr_3827 0.67 -2.2 4,556,239 + Psyr_3827 0.67 +4.1 4,556,240 - Psyr_3827 0.67 +3.0 4,556,240 - Psyr_3827 0.67 +3.1 4,556,240 - Psyr_3827 0.67 -0.4 4,556,240 - Psyr_3827 0.67 -0.3 4,556,240 - Psyr_3827 0.67 -1.3 4,556,240 - Psyr_3827 0.67 -0.9 4,556,240 - Psyr_3827 0.67 +3.7 4,556,240 - Psyr_3827 0.67 +2.0 4,556,377 + Psyr_3827 0.75 +2.0 4,556,377 + Psyr_3827 0.75 -0.2 4,556,378 - Psyr_3827 0.75 -0.0 4,556,378 - Psyr_3827 0.75 +0.0 4,556,378 - Psyr_3827 0.75 -1.7 4,556,538 + Psyr_3827 0.84 -2.6 4,556,788 + +1.0 4,556,788 + -1.2 4,556,789 - +2.6 4,556,826 - +2.0 4,556,900 + +3.7 4,556,901 - +3.4 4,556,952 + -1.6 4,556,952 + -1.6 4,556,952 + -0.0 4,556,952 + -1.2 4,557,040 + +0.5 4,557,041 - +1.6 4,557,128 + +2.8 4,557,195 + +1.3 4,557,195 + -0.2 4,557,195 + +1.0 4,557,195 + -0.0 4,557,196 - +3.8 4,557,196 - +2.3 4,557,196 - +2.0 4,557,196 - +0.9 4,557,217 - -2.9 4,557,273 + +2.6 4,557,273 + +4.6 4,557,273 + -1.6 4,557,273 + -2.0 4,557,274 - +1.0 4,557,274 - -2.0 4,557,274 - -3.5 4,557,274 - -0.4 4,557,294 + +4.2 4,557,294 + +3.9 4,557,294 + -0.3 4,557,295 - +1.0 4,557,295 - -0.4 4,557,410 + +2.3 4,557,581 + Psyr_3828 0.19 -0.8 4,557,581 + Psyr_3828 0.19 +0.4 4,557,581 + Psyr_3828 0.19 +3.6 4,557,581 + Psyr_3828 0.19 -0.7 4,557,581 + Psyr_3828 0.19 +1.3 4,557,581 + Psyr_3828 0.19 +2.6 4,557,581 + Psyr_3828 0.19 -0.8 4,557,582 - Psyr_3828 0.19 +3.8 4,557,596 + Psyr_3828 0.21 +3.1 4,557,597 - Psyr_3828 0.21 +1.0 4,557,656 + Psyr_3828 0.26 -3.3 4,557,782 + Psyr_3828 0.37 +2.0 4,557,807 - Psyr_3828 0.39 -1.5 4,557,807 - Psyr_3828 0.39 -2.3 4,557,807 - Psyr_3828 0.39 -2.9 4,557,807 - Psyr_3828 0.39 +3.4 4,557,807 - Psyr_3828 0.39 -0.0 4,557,818 + Psyr_3828 0.40 -1.4 4,557,818 + Psyr_3828 0.40 +1.0 4,557,819 - Psyr_3828 0.40 +3.7 4,557,828 - Psyr_3828 0.41 -0.3 4,557,828 - Psyr_3828 0.41 +1.0
Or see this region's nucleotide sequence