Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3805 and Psyr_3806 are separated by 665 nucleotides
Psyr_3805: Psyr_3805 - hypothetical protein, at 4,524,298 to 4,525,665
_3805
Psyr_3806: Psyr_3806 - hypothetical protein, at 4,526,331 to 4,526,816
_3806
Position (kb) 4526
4527 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 4525.353 kb on + strand, within Psyr_3805 at 4525.371 kb on + strand, within Psyr_3805 at 4525.398 kb on + strand, within Psyr_3805 at 4525.623 kb on - strand at 4525.666 kb on + strand at 4525.694 kb on + strand at 4525.695 kb on - strand at 4525.783 kb on - strand at 4525.788 kb on - strand at 4525.792 kb on - strand at 4525.848 kb on + strand at 4525.852 kb on + strand at 4526.046 kb on + strand at 4526.076 kb on + strand at 4526.077 kb on - strand at 4526.112 kb on - strand at 4526.191 kb on - strand at 4526.198 kb on + strand at 4526.199 kb on - strand at 4526.208 kb on + strand at 4526.312 kb on + strand at 4526.313 kb on - strand at 4526.379 kb on + strand at 4526.420 kb on - strand, within Psyr_3806 at 4526.447 kb on + strand, within Psyr_3806 at 4526.447 kb on + strand, within Psyr_3806 at 4526.447 kb on + strand, within Psyr_3806 at 4526.447 kb on + strand, within Psyr_3806 at 4526.447 kb on + strand, within Psyr_3806 at 4526.448 kb on - strand, within Psyr_3806 at 4526.448 kb on - strand, within Psyr_3806 at 4526.448 kb on - strand, within Psyr_3806 at 4526.452 kb on - strand, within Psyr_3806 at 4526.564 kb on + strand, within Psyr_3806 at 4526.614 kb on + strand, within Psyr_3806 at 4526.699 kb on + strand, within Psyr_3806 at 4526.750 kb on - strand, within Psyr_3806 at 4526.754 kb on - strand, within Psyr_3806 at 4526.785 kb on - strand at 4526.988 kb on + strand at 4527.025 kb on + strand at 4527.025 kb on + strand at 4527.025 kb on + strand at 4527.026 kb on - strand at 4527.029 kb on + strand at 4527.030 kb on - strand at 4527.030 kb on - strand at 4527.030 kb on - strand at 4527.103 kb on - strand at 4527.103 kb on - strand at 4527.134 kb on - strand at 4527.218 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.330 kb on + strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.331 kb on - strand at 4527.381 kb on + strand at 4527.381 kb on + strand at 4527.382 kb on - strand at 4527.447 kb on - strand at 4527.527 kb on - strand at 4527.545 kb on - strand at 4527.545 kb on - strand at 4527.545 kb on - strand at 4527.623 kb on + strand at 4527.623 kb on + strand at 4527.644 kb on + strand at 4527.644 kb on + strand at 4527.645 kb on - strand at 4527.645 kb on - strand at 4527.645 kb on - strand at 4527.648 kb on - strand at 4527.749 kb on + strand at 4527.750 kb on - strand at 4527.764 kb on - strand at 4527.764 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,525,353 + Psyr_3805 0.77 -1.6 4,525,371 + Psyr_3805 0.78 +2.3 4,525,398 + Psyr_3805 0.80 +2.3 4,525,623 - -0.1 4,525,666 + +1.9 4,525,694 + +0.4 4,525,695 - -2.0 4,525,783 - -0.8 4,525,788 - -2.6 4,525,792 - -1.1 4,525,848 + +0.4 4,525,852 + -1.4 4,526,046 + +0.9 4,526,076 + -0.1 4,526,077 - +2.3 4,526,112 - -0.6 4,526,191 - -2.1 4,526,198 + -3.1 4,526,199 - +1.5 4,526,208 + -3.3 4,526,312 + -2.6 4,526,313 - -0.1 4,526,379 + -3.1 4,526,420 - Psyr_3806 0.18 +1.9 4,526,447 + Psyr_3806 0.24 +0.9 4,526,447 + Psyr_3806 0.24 -0.6 4,526,447 + Psyr_3806 0.24 -0.6 4,526,447 + Psyr_3806 0.24 -3.9 4,526,447 + Psyr_3806 0.24 -0.1 4,526,448 - Psyr_3806 0.24 -6.1 4,526,448 - Psyr_3806 0.24 +2.3 4,526,448 - Psyr_3806 0.24 -4.9 4,526,452 - Psyr_3806 0.25 +0.9 4,526,564 + Psyr_3806 0.48 +2.5 4,526,614 + Psyr_3806 0.58 -1.8 4,526,699 + Psyr_3806 0.76 -2.0 4,526,750 - Psyr_3806 0.86 +0.9 4,526,754 - Psyr_3806 0.87 -4.1 4,526,785 - -1.9 4,526,988 + -1.2 4,527,025 + +1.5 4,527,025 + -3.6 4,527,025 + +1.6 4,527,026 - +1.5 4,527,029 + +4.3 4,527,030 - -0.1 4,527,030 - +3.1 4,527,030 - -1.9 4,527,103 - -4.8 4,527,103 - -4.4 4,527,134 - -5.3 4,527,218 + -0.4 4,527,330 + +2.5 4,527,330 + -0.8 4,527,330 + -3.1 4,527,330 + +1.5 4,527,330 + -1.4 4,527,330 + -0.8 4,527,331 - -0.4 4,527,331 - -3.0 4,527,331 - -2.0 4,527,331 - +2.5 4,527,331 - -4.3 4,527,381 + -1.7 4,527,381 + +0.9 4,527,382 - -0.1 4,527,447 - +3.1 4,527,527 - -0.1 4,527,545 - -2.0 4,527,545 - +1.9 4,527,545 - +0.9 4,527,623 + -0.1 4,527,623 + -1.2 4,527,644 + -1.8 4,527,644 + -1.1 4,527,645 - -0.1 4,527,645 - +1.5 4,527,645 - +2.5 4,527,648 - -0.8 4,527,749 + +1.5 4,527,750 - +2.5 4,527,764 - +3.1 4,527,764 - -3.2
Or see this region's nucleotide sequence