Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3802 and Psyr_3803 are separated by 159 nucleotides Psyr_3803 and Psyr_3804 are separated by 484 nucleotides
Psyr_3802: Psyr_3802 - conserved hypothetical protein, at 4,519,156 to 4,520,268
_3802
Psyr_3803: Psyr_3803 - MscS Mechanosensitive ion channel, at 4,520,428 to 4,521,720
_3803
Psyr_3804: Psyr_3804 - ATP-dependent DNA helicase, RecQ-like protein, at 4,522,205 to 4,524,301
_3804
Position (kb) 4520
4521
4522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4519.647 kb on + strand, within Psyr_3802 at 4519.648 kb on - strand, within Psyr_3802 at 4519.648 kb on - strand, within Psyr_3802 at 4519.648 kb on - strand, within Psyr_3802 at 4519.649 kb on + strand, within Psyr_3802 at 4519.649 kb on + strand, within Psyr_3802 at 4519.649 kb on + strand, within Psyr_3802 at 4519.649 kb on + strand, within Psyr_3802 at 4519.649 kb on + strand, within Psyr_3802 at 4519.649 kb on + strand, within Psyr_3802 at 4519.649 kb on + strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.650 kb on - strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.653 kb on + strand, within Psyr_3802 at 4519.654 kb on - strand, within Psyr_3802 at 4519.654 kb on - strand, within Psyr_3802 at 4519.654 kb on - strand, within Psyr_3802 at 4519.654 kb on - strand, within Psyr_3802 at 4519.806 kb on - strand, within Psyr_3802 at 4519.821 kb on - strand, within Psyr_3802 at 4519.883 kb on + strand, within Psyr_3802 at 4519.884 kb on - strand, within Psyr_3802 at 4520.015 kb on + strand, within Psyr_3802 at 4520.015 kb on + strand, within Psyr_3802 at 4520.016 kb on - strand, within Psyr_3802 at 4520.062 kb on - strand, within Psyr_3802 at 4520.062 kb on - strand, within Psyr_3802 at 4520.082 kb on + strand, within Psyr_3802 at 4520.105 kb on + strand, within Psyr_3802 at 4520.105 kb on + strand, within Psyr_3802 at 4520.105 kb on + strand, within Psyr_3802 at 4520.106 kb on - strand, within Psyr_3802 at 4520.106 kb on - strand, within Psyr_3802 at 4520.106 kb on - strand, within Psyr_3802 at 4520.261 kb on - strand at 4520.261 kb on - strand at 4520.301 kb on + strand at 4520.301 kb on + strand at 4520.301 kb on + strand at 4520.302 kb on - strand at 4520.316 kb on + strand at 4520.317 kb on - strand at 4520.378 kb on + strand at 4520.379 kb on - strand at 4520.387 kb on + strand at 4520.387 kb on + strand at 4520.387 kb on + strand at 4520.388 kb on - strand at 4520.427 kb on + strand at 4520.428 kb on - strand at 4520.428 kb on - strand at 4520.433 kb on + strand at 4520.572 kb on + strand, within Psyr_3803 at 4520.812 kb on + strand, within Psyr_3803 at 4520.812 kb on + strand, within Psyr_3803 at 4520.812 kb on + strand, within Psyr_3803 at 4520.813 kb on - strand, within Psyr_3803 at 4520.813 kb on - strand, within Psyr_3803 at 4520.881 kb on + strand, within Psyr_3803 at 4521.316 kb on + strand, within Psyr_3803 at 4521.316 kb on + strand, within Psyr_3803 at 4521.316 kb on + strand, within Psyr_3803 at 4521.317 kb on - strand, within Psyr_3803 at 4521.317 kb on - strand, within Psyr_3803 at 4521.317 kb on - strand, within Psyr_3803 at 4521.317 kb on - strand, within Psyr_3803 at 4521.317 kb on - strand, within Psyr_3803 at 4521.427 kb on + strand, within Psyr_3803 at 4521.428 kb on - strand, within Psyr_3803 at 4521.440 kb on - strand, within Psyr_3803 at 4521.440 kb on - strand, within Psyr_3803 at 4521.440 kb on - strand, within Psyr_3803 at 4521.440 kb on - strand, within Psyr_3803 at 4521.440 kb on - strand, within Psyr_3803 at 4521.529 kb on + strand, within Psyr_3803 at 4521.529 kb on + strand, within Psyr_3803 at 4521.530 kb on - strand, within Psyr_3803 at 4521.530 kb on - strand, within Psyr_3803 at 4521.530 kb on - strand, within Psyr_3803 at 4521.530 kb on - strand, within Psyr_3803 at 4521.562 kb on + strand, within Psyr_3803 at 4521.562 kb on + strand, within Psyr_3803 at 4521.593 kb on - strand at 4521.681 kb on + strand at 4521.681 kb on + strand at 4521.681 kb on + strand at 4521.681 kb on + strand at 4521.682 kb on - strand at 4521.774 kb on + strand at 4521.800 kb on - strand at 4521.805 kb on + strand at 4521.806 kb on - strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.807 kb on + strand at 4521.808 kb on - strand at 4521.808 kb on - strand at 4521.808 kb on - strand at 4521.808 kb on - strand at 4521.808 kb on - strand at 4521.808 kb on - strand at 4521.808 kb on - strand at 4521.808 kb on - strand at 4521.877 kb on + strand at 4521.917 kb on + strand at 4521.918 kb on - strand at 4521.936 kb on + strand at 4521.937 kb on - strand at 4521.937 kb on - strand at 4522.036 kb on + strand at 4522.036 kb on + strand at 4522.036 kb on + strand at 4522.037 kb on - strand at 4522.044 kb on + strand at 4522.044 kb on + strand at 4522.045 kb on - strand at 4522.045 kb on - strand at 4522.083 kb on + strand at 4522.084 kb on - strand at 4522.100 kb on - strand at 4522.199 kb on + strand at 4522.199 kb on + strand at 4522.199 kb on + strand at 4522.199 kb on + strand at 4522.199 kb on + strand at 4522.199 kb on + strand at 4522.199 kb on + strand at 4522.199 kb on + strand at 4522.200 kb on - strand at 4522.200 kb on - strand at 4522.200 kb on - strand at 4522.200 kb on - strand at 4522.230 kb on + strand at 4522.231 kb on - strand at 4522.361 kb on + strand at 4522.361 kb on + strand at 4522.361 kb on + strand at 4522.410 kb on + strand at 4522.410 kb on + strand at 4522.410 kb on + strand at 4522.410 kb on + strand at 4522.411 kb on - strand at 4522.411 kb on - strand at 4522.411 kb on - strand at 4522.429 kb on - strand, within Psyr_3804 at 4522.429 kb on - strand, within Psyr_3804 at 4522.495 kb on + strand, within Psyr_3804 at 4522.496 kb on - strand, within Psyr_3804 at 4522.496 kb on - strand, within Psyr_3804 at 4522.496 kb on - strand, within Psyr_3804 at 4522.548 kb on + strand, within Psyr_3804 at 4522.642 kb on - strand, within Psyr_3804 at 4522.644 kb on + strand, within Psyr_3804 at 4522.644 kb on + strand, within Psyr_3804 at 4522.644 kb on + strand, within Psyr_3804 at 4522.644 kb on + strand, within Psyr_3804 at 4522.644 kb on + strand, within Psyr_3804 at 4522.644 kb on + strand, within Psyr_3804 at 4522.644 kb on + strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804 at 4522.645 kb on - strand, within Psyr_3804
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,519,647 + Psyr_3802 0.44 -2.1 4,519,648 - Psyr_3802 0.44 +2.9 4,519,648 - Psyr_3802 0.44 -0.7 4,519,648 - Psyr_3802 0.44 +2.5 4,519,649 + Psyr_3802 0.44 +2.5 4,519,649 + Psyr_3802 0.44 -0.8 4,519,649 + Psyr_3802 0.44 -0.9 4,519,649 + Psyr_3802 0.44 -2.7 4,519,649 + Psyr_3802 0.44 +3.5 4,519,649 + Psyr_3802 0.44 -1.2 4,519,649 + Psyr_3802 0.44 +0.2 4,519,650 - Psyr_3802 0.44 +1.0 4,519,650 - Psyr_3802 0.44 -0.6 4,519,650 - Psyr_3802 0.44 -0.7 4,519,650 - Psyr_3802 0.44 +3.8 4,519,650 - Psyr_3802 0.44 +0.1 4,519,650 - Psyr_3802 0.44 -0.6 4,519,650 - Psyr_3802 0.44 +4.2 4,519,650 - Psyr_3802 0.44 +2.8 4,519,650 - Psyr_3802 0.44 +4.0 4,519,650 - Psyr_3802 0.44 -0.5 4,519,650 - Psyr_3802 0.44 +2.8 4,519,650 - Psyr_3802 0.44 +2.3 4,519,650 - Psyr_3802 0.44 -1.6 4,519,650 - Psyr_3802 0.44 +3.6 4,519,653 + Psyr_3802 0.45 +0.9 4,519,653 + Psyr_3802 0.45 +0.8 4,519,653 + Psyr_3802 0.45 +1.8 4,519,653 + Psyr_3802 0.45 +1.9 4,519,653 + Psyr_3802 0.45 +1.5 4,519,653 + Psyr_3802 0.45 +2.5 4,519,653 + Psyr_3802 0.45 +3.4 4,519,653 + Psyr_3802 0.45 -1.7 4,519,654 - Psyr_3802 0.45 +0.1 4,519,654 - Psyr_3802 0.45 +0.6 4,519,654 - Psyr_3802 0.45 -1.1 4,519,654 - Psyr_3802 0.45 +3.8 4,519,806 - Psyr_3802 0.58 +0.4 4,519,821 - Psyr_3802 0.60 +3.5 4,519,883 + Psyr_3802 0.65 -1.2 4,519,884 - Psyr_3802 0.65 -0.6 4,520,015 + Psyr_3802 0.77 -1.5 4,520,015 + Psyr_3802 0.77 -1.6 4,520,016 - Psyr_3802 0.77 -0.4 4,520,062 - Psyr_3802 0.81 -0.5 4,520,062 - Psyr_3802 0.81 -1.3 4,520,082 + Psyr_3802 0.83 -1.6 4,520,105 + Psyr_3802 0.85 +2.5 4,520,105 + Psyr_3802 0.85 +0.2 4,520,105 + Psyr_3802 0.85 +4.5 4,520,106 - Psyr_3802 0.85 +0.1 4,520,106 - Psyr_3802 0.85 -2.1 4,520,106 - Psyr_3802 0.85 -0.6 4,520,261 - +2.8 4,520,261 - -0.7 4,520,301 + +2.8 4,520,301 + -2.4 4,520,301 + -1.9 4,520,302 - +0.5 4,520,316 + -1.3 4,520,317 - -0.8 4,520,378 + +3.3 4,520,379 - -0.8 4,520,387 + +2.1 4,520,387 + +0.2 4,520,387 + +0.9 4,520,388 - +1.9 4,520,427 + -2.7 4,520,428 - -1.3 4,520,428 - -0.0 4,520,433 + -0.4 4,520,572 + Psyr_3803 0.11 -1.5 4,520,812 + Psyr_3803 0.30 -1.1 4,520,812 + Psyr_3803 0.30 +4.0 4,520,812 + Psyr_3803 0.30 -2.5 4,520,813 - Psyr_3803 0.30 +2.3 4,520,813 - Psyr_3803 0.30 -0.9 4,520,881 + Psyr_3803 0.35 +3.9 4,521,316 + Psyr_3803 0.69 +0.0 4,521,316 + Psyr_3803 0.69 +0.5 4,521,316 + Psyr_3803 0.69 +0.5 4,521,317 - Psyr_3803 0.69 -0.8 4,521,317 - Psyr_3803 0.69 -1.0 4,521,317 - Psyr_3803 0.69 -0.7 4,521,317 - Psyr_3803 0.69 -0.1 4,521,317 - Psyr_3803 0.69 +0.0 4,521,427 + Psyr_3803 0.77 +1.9 4,521,428 - Psyr_3803 0.77 -1.3 4,521,440 - Psyr_3803 0.78 -2.7 4,521,440 - Psyr_3803 0.78 -0.3 4,521,440 - Psyr_3803 0.78 +1.9 4,521,440 - Psyr_3803 0.78 +1.9 4,521,440 - Psyr_3803 0.78 +2.5 4,521,529 + Psyr_3803 0.85 +1.9 4,521,529 + Psyr_3803 0.85 -1.0 4,521,530 - Psyr_3803 0.85 +0.8 4,521,530 - Psyr_3803 0.85 -1.4 4,521,530 - Psyr_3803 0.85 -1.3 4,521,530 - Psyr_3803 0.85 -1.3 4,521,562 + Psyr_3803 0.88 -2.4 4,521,562 + Psyr_3803 0.88 -1.6 4,521,593 - -1.3 4,521,681 + +0.4 4,521,681 + -0.6 4,521,681 + -2.2 4,521,681 + -0.3 4,521,682 - -1.3 4,521,774 + +2.5 4,521,800 - -1.6 4,521,805 + +0.4 4,521,806 - -3.8 4,521,807 + +3.1 4,521,807 + -2.5 4,521,807 + +0.3 4,521,807 + -0.3 4,521,807 + -0.3 4,521,807 + -1.4 4,521,807 + +4.2 4,521,807 + -2.6 4,521,807 + -0.5 4,521,807 + +3.6 4,521,808 - +0.9 4,521,808 - -4.4 4,521,808 - -0.1 4,521,808 - -0.1 4,521,808 - -2.5 4,521,808 - -0.1 4,521,808 - -4.6 4,521,808 - -4.1 4,521,877 + -1.9 4,521,917 + -0.7 4,521,918 - +2.3 4,521,936 + -2.1 4,521,937 - +3.6 4,521,937 - -1.6 4,522,036 + -0.1 4,522,036 + +4.1 4,522,036 + +0.5 4,522,037 - -0.1 4,522,044 + +2.3 4,522,044 + +0.9 4,522,045 - -1.7 4,522,045 - -3.5 4,522,083 + -1.8 4,522,084 - -2.8 4,522,100 - +3.3 4,522,199 + -0.1 4,522,199 + -0.6 4,522,199 + +1.9 4,522,199 + +0.9 4,522,199 + +2.8 4,522,199 + -0.5 4,522,199 + +3.1 4,522,199 + +2.8 4,522,200 - -0.5 4,522,200 - -3.1 4,522,200 - +0.4 4,522,200 - -0.6 4,522,230 + -1.9 4,522,231 - +0.4 4,522,361 + -2.4 4,522,361 + -3.1 4,522,361 + -1.6 4,522,410 + +1.1 4,522,410 + +0.1 4,522,410 + +1.5 4,522,410 + +1.9 4,522,411 - +3.4 4,522,411 - +0.7 4,522,411 - +2.5 4,522,429 - Psyr_3804 0.11 +2.5 4,522,429 - Psyr_3804 0.11 -0.1 4,522,495 + Psyr_3804 0.14 +3.3 4,522,496 - Psyr_3804 0.14 +0.9 4,522,496 - Psyr_3804 0.14 -1.1 4,522,496 - Psyr_3804 0.14 -0.3 4,522,548 + Psyr_3804 0.16 +0.9 4,522,642 - Psyr_3804 0.21 +2.1 4,522,644 + Psyr_3804 0.21 +2.3 4,522,644 + Psyr_3804 0.21 -0.4 4,522,644 + Psyr_3804 0.21 -0.1 4,522,644 + Psyr_3804 0.21 +2.9 4,522,644 + Psyr_3804 0.21 -0.1 4,522,644 + Psyr_3804 0.21 +2.9 4,522,644 + Psyr_3804 0.21 +2.3 4,522,645 - Psyr_3804 0.21 +2.5 4,522,645 - Psyr_3804 0.21 -2.6 4,522,645 - Psyr_3804 0.21 +3.5 4,522,645 - Psyr_3804 0.21 +0.9 4,522,645 - Psyr_3804 0.21 -1.4 4,522,645 - Psyr_3804 0.21 +2.3 4,522,645 - Psyr_3804 0.21 -0.9 4,522,645 - Psyr_3804 0.21 -0.1
Or see this region's nucleotide sequence