Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3749 and Psyr_3750 are separated by 16 nucleotides Psyr_3750 and Psyr_3751 are separated by 56 nucleotides Psyr_3751 and Psyr_3752 are separated by 170 nucleotides Psyr_3752 and Psyr_3753 are separated by 305 nucleotides
Psyr_3749: Psyr_3749 - Peptidase M42, at 4,468,065 to 4,469,261
_3749
Psyr_3750: Psyr_3750 - Protein of unknown function UPF0270, at 4,469,278 to 4,469,556
_3750
Psyr_3751: Psyr_3751 - Carbon storage regulator, at 4,469,613 to 4,469,807
_3751
Psyr_3752: Psyr_3752 - Protein of unknown function UPF0060, at 4,469,978 to 4,470,310
_3752
Psyr_3753: Psyr_3753 - Short-chain dehydrogenase/reductase SDR, at 4,470,616 to 4,471,500
_3753
Position (kb)
4469
4470 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 4468.881 kb on + strand, within Psyr_3749 at 4468.962 kb on + strand, within Psyr_3749 at 4468.962 kb on + strand, within Psyr_3749 at 4468.962 kb on + strand, within Psyr_3749 at 4468.965 kb on + strand, within Psyr_3749 at 4468.965 kb on + strand, within Psyr_3749 at 4468.965 kb on + strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4468.966 kb on - strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.103 kb on + strand, within Psyr_3749 at 4469.104 kb on - strand at 4469.104 kb on - strand, within Psyr_3749 at 4469.104 kb on - strand, within Psyr_3749 at 4469.104 kb on - strand, within Psyr_3749 at 4469.104 kb on - strand, within Psyr_3749 at 4469.104 kb on - strand, within Psyr_3749 at 4469.107 kb on + strand, within Psyr_3749 at 4469.107 kb on + strand, within Psyr_3749 at 4469.107 kb on + strand, within Psyr_3749 at 4469.107 kb on + strand, within Psyr_3749 at 4469.107 kb on + strand, within Psyr_3749 at 4469.107 kb on + strand, within Psyr_3749 at 4469.108 kb on - strand, within Psyr_3749 at 4469.108 kb on - strand, within Psyr_3749 at 4469.108 kb on - strand, within Psyr_3749 at 4469.108 kb on - strand, within Psyr_3749 at 4469.108 kb on - strand, within Psyr_3749 at 4469.108 kb on - strand, within Psyr_3749 at 4469.297 kb on + strand at 4469.297 kb on + strand at 4469.297 kb on + strand at 4469.297 kb on + strand at 4469.297 kb on + strand at 4469.297 kb on + strand at 4469.297 kb on + strand at 4469.297 kb on + strand at 4469.298 kb on - strand at 4469.298 kb on - strand at 4469.298 kb on - strand at 4469.298 kb on - strand at 4469.298 kb on - strand at 4469.442 kb on - strand, within Psyr_3750 at 4469.561 kb on + strand at 4469.561 kb on + strand at 4469.562 kb on - strand at 4469.562 kb on - strand at 4469.665 kb on + strand, within Psyr_3751 at 4469.665 kb on + strand, within Psyr_3751 at 4469.665 kb on + strand, within Psyr_3751 at 4469.666 kb on - strand, within Psyr_3751 at 4469.666 kb on - strand, within Psyr_3751 at 4469.666 kb on - strand, within Psyr_3751 at 4469.666 kb on - strand, within Psyr_3751 at 4469.800 kb on - strand at 4469.888 kb on - strand at 4469.930 kb on + strand at 4469.931 kb on - strand at 4469.957 kb on - strand at 4470.111 kb on + strand, within Psyr_3752 at 4470.111 kb on + strand, within Psyr_3752 at 4470.111 kb on + strand, within Psyr_3752 at 4470.111 kb on + strand, within Psyr_3752 at 4470.111 kb on + strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.112 kb on - strand, within Psyr_3752 at 4470.124 kb on - strand, within Psyr_3752 at 4470.236 kb on + strand, within Psyr_3752 at 4470.237 kb on - strand, within Psyr_3752 at 4470.255 kb on + strand, within Psyr_3752 at 4470.255 kb on + strand, within Psyr_3752 at 4470.256 kb on - strand, within Psyr_3752 at 4470.256 kb on - strand, within Psyr_3752 at 4470.256 kb on - strand, within Psyr_3752 at 4470.256 kb on - strand, within Psyr_3752 at 4470.256 kb on - strand, within Psyr_3752 at 4470.266 kb on + strand, within Psyr_3752 at 4470.267 kb on - strand, within Psyr_3752 at 4470.300 kb on + strand at 4470.300 kb on + strand at 4470.300 kb on + strand at 4470.300 kb on + strand at 4470.413 kb on + strand at 4470.677 kb on + strand at 4470.677 kb on + strand at 4470.677 kb on + strand at 4470.677 kb on + strand at 4470.678 kb on - strand at 4470.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,468,881 + Psyr_3749 0.68 -0.7 4,468,962 + Psyr_3749 0.75 +2.5 4,468,962 + Psyr_3749 0.75 +0.4 4,468,962 + Psyr_3749 0.75 +2.3 4,468,965 + Psyr_3749 0.75 -1.5 4,468,965 + Psyr_3749 0.75 -0.0 4,468,965 + Psyr_3749 0.75 +0.2 4,468,966 - Psyr_3749 0.75 +3.1 4,468,966 - Psyr_3749 0.75 -1.9 4,468,966 - Psyr_3749 0.75 -2.1 4,468,966 - Psyr_3749 0.75 +2.3 4,468,966 - Psyr_3749 0.75 +1.5 4,468,966 - Psyr_3749 0.75 +2.8 4,468,966 - Psyr_3749 0.75 +2.5 4,469,103 + Psyr_3749 0.87 +2.3 4,469,103 + Psyr_3749 0.87 -1.0 4,469,103 + Psyr_3749 0.87 +3.3 4,469,103 + Psyr_3749 0.87 +3.0 4,469,103 + Psyr_3749 0.87 -0.0 4,469,103 + Psyr_3749 0.87 -1.5 4,469,103 + Psyr_3749 0.87 -1.9 4,469,103 + Psyr_3749 0.87 +0.4 4,469,103 + Psyr_3749 0.87 +2.8 4,469,103 + Psyr_3749 0.87 -0.4 4,469,103 + Psyr_3749 0.87 +0.2 4,469,104 - -3.5 4,469,104 - Psyr_3749 0.87 -2.1 4,469,104 - Psyr_3749 0.87 -0.5 4,469,104 - Psyr_3749 0.87 -3.0 4,469,104 - Psyr_3749 0.87 +3.7 4,469,104 - Psyr_3749 0.87 +3.4 4,469,107 + Psyr_3749 0.87 -1.8 4,469,107 + Psyr_3749 0.87 +3.1 4,469,107 + Psyr_3749 0.87 +2.5 4,469,107 + Psyr_3749 0.87 -1.0 4,469,107 + Psyr_3749 0.87 +1.5 4,469,107 + Psyr_3749 0.87 -1.0 4,469,108 - Psyr_3749 0.87 +2.5 4,469,108 - Psyr_3749 0.87 +2.5 4,469,108 - Psyr_3749 0.87 +0.5 4,469,108 - Psyr_3749 0.87 +3.1 4,469,108 - Psyr_3749 0.87 +0.3 4,469,108 - Psyr_3749 0.87 -1.5 4,469,297 + +3.5 4,469,297 + -0.6 4,469,297 + +4.8 4,469,297 + +3.8 4,469,297 + -1.5 4,469,297 + +4.1 4,469,297 + -1.4 4,469,297 + -0.1 4,469,298 - -1.0 4,469,298 - -0.0 4,469,298 - -0.8 4,469,298 - -1.0 4,469,298 - +1.2 4,469,442 - Psyr_3750 0.59 -0.9 4,469,561 + -0.0 4,469,561 + -0.7 4,469,562 - +3.7 4,469,562 - -0.8 4,469,665 + Psyr_3751 0.27 -3.8 4,469,665 + Psyr_3751 0.27 -3.3 4,469,665 + Psyr_3751 0.27 -3.5 4,469,666 - Psyr_3751 0.27 +2.8 4,469,666 - Psyr_3751 0.27 -1.9 4,469,666 - Psyr_3751 0.27 -1.5 4,469,666 - Psyr_3751 0.27 -3.2 4,469,800 - -0.0 4,469,888 - -1.3 4,469,930 + +2.3 4,469,931 - -0.5 4,469,957 - +1.1 4,470,111 + Psyr_3752 0.40 +2.3 4,470,111 + Psyr_3752 0.40 +0.4 4,470,111 + Psyr_3752 0.40 +2.5 4,470,111 + Psyr_3752 0.40 -0.2 4,470,111 + Psyr_3752 0.40 +1.3 4,470,112 - Psyr_3752 0.40 -0.8 4,470,112 - Psyr_3752 0.40 +2.9 4,470,112 - Psyr_3752 0.40 -1.4 4,470,112 - Psyr_3752 0.40 +3.4 4,470,112 - Psyr_3752 0.40 -2.9 4,470,112 - Psyr_3752 0.40 -1.2 4,470,112 - Psyr_3752 0.40 +3.4 4,470,112 - Psyr_3752 0.40 -1.1 4,470,112 - Psyr_3752 0.40 +0.5 4,470,112 - Psyr_3752 0.40 +2.8 4,470,112 - Psyr_3752 0.40 -0.1 4,470,124 - Psyr_3752 0.44 +0.9 4,470,236 + Psyr_3752 0.77 +0.9 4,470,237 - Psyr_3752 0.78 +2.5 4,470,255 + Psyr_3752 0.83 +2.3 4,470,255 + Psyr_3752 0.83 -1.6 4,470,256 - Psyr_3752 0.83 -0.1 4,470,256 - Psyr_3752 0.83 +1.5 4,470,256 - Psyr_3752 0.83 -0.9 4,470,256 - Psyr_3752 0.83 +3.9 4,470,256 - Psyr_3752 0.83 +3.5 4,470,266 + Psyr_3752 0.86 +3.1 4,470,267 - Psyr_3752 0.87 -0.8 4,470,300 + -0.9 4,470,300 + +0.3 4,470,300 + -3.6 4,470,300 + -0.7 4,470,413 + -0.2 4,470,677 + +2.3 4,470,677 + -1.2 4,470,677 + +3.3 4,470,677 + +1.5 4,470,678 - +2.8 4,470,678 - -3.2
Or see this region's nucleotide sequence