Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3706

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3705 and Psyr_3706 are separated by 194 nucleotidesPsyr_3706 and Psyr_3707 are separated by 66 nucleotides Psyr_3705: Psyr_3705 - conserved hypothetical protein, at 4,391,725 to 4,392,549 _3705 Psyr_3706: Psyr_3706 - Protein of unknown function DUF335, at 4,392,744 to 4,393,238 _3706 Psyr_3707: Psyr_3707 - Sodium:dicarboxylate symporter, at 4,393,305 to 4,394,657 _3707 Position (kb) 4392 4393 4394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4391.975 kb on + strand, within Psyr_3705at 4391.976 kb on - strand, within Psyr_3705at 4391.976 kb on - strand, within Psyr_3705at 4392.002 kb on + strand, within Psyr_3705at 4392.170 kb on + strand, within Psyr_3705at 4392.170 kb on + strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.171 kb on - strand, within Psyr_3705at 4392.248 kb on + strand, within Psyr_3705at 4392.248 kb on + strand, within Psyr_3705at 4392.248 kb on + strandat 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.249 kb on - strand, within Psyr_3705at 4392.297 kb on - strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.413 kb on + strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.414 kb on - strand, within Psyr_3705at 4392.551 kb on + strandat 4392.551 kb on + strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.552 kb on - strandat 4392.617 kb on + strandat 4392.618 kb on - strandat 4392.618 kb on - strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.621 kb on + strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.622 kb on - strandat 4392.701 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.717 kb on - strandat 4392.739 kb on - strandat 4392.906 kb on + strand, within Psyr_3706at 4392.906 kb on + strand, within Psyr_3706at 4392.906 kb on + strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4392.907 kb on - strand, within Psyr_3706at 4393.038 kb on + strand, within Psyr_3706at 4393.039 kb on - strand, within Psyr_3706at 4393.068 kb on + strand, within Psyr_3706at 4393.069 kb on - strand, within Psyr_3706at 4393.069 kb on - strand, within Psyr_3706at 4393.098 kb on + strand, within Psyr_3706at 4393.098 kb on + strand, within Psyr_3706at 4393.104 kb on + strand, within Psyr_3706at 4393.104 kb on + strand, within Psyr_3706at 4393.105 kb on - strand, within Psyr_3706at 4393.236 kb on + strandat 4393.319 kb on + strandat 4393.325 kb on + strandat 4393.326 kb on - strandat 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.729 kb on + strand, within Psyr_3707at 4393.739 kb on + strand, within Psyr_3707at 4393.760 kb on - strand, within Psyr_3707at 4393.856 kb on + strand, within Psyr_3707at 4393.857 kb on - strand, within Psyr_3707at 4393.857 kb on - strand, within Psyr_3707at 4393.888 kb on + strand, within Psyr_3707at 4393.888 kb on + strand, within Psyr_3707at 4393.889 kb on - strand, within Psyr_3707at 4393.941 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.972 kb on + strand, within Psyr_3707at 4393.973 kb on - strand, within Psyr_3707

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
4,391,975 + Psyr_3705 0.30 +0.3
4,391,976 - Psyr_3705 0.30 +1.9
4,391,976 - Psyr_3705 0.30 -0.3
4,392,002 + Psyr_3705 0.34 +2.5
4,392,170 + Psyr_3705 0.54 +3.1
4,392,170 + Psyr_3705 0.54 +2.8
4,392,171 - Psyr_3705 0.54 -1.8
4,392,171 - Psyr_3705 0.54 -1.4
4,392,171 - Psyr_3705 0.54 +2.3
4,392,171 - Psyr_3705 0.54 -0.1
4,392,248 + Psyr_3705 0.63 +0.9
4,392,248 + Psyr_3705 0.63 +0.9
4,392,248 + +1.9
4,392,249 - Psyr_3705 0.64 -2.5
4,392,249 - Psyr_3705 0.64 -1.5
4,392,249 - Psyr_3705 0.64 -0.4
4,392,249 - Psyr_3705 0.64 -0.6
4,392,297 - Psyr_3705 0.69 -0.1
4,392,413 + Psyr_3705 0.83 -0.1
4,392,413 + Psyr_3705 0.83 -0.5
4,392,413 + Psyr_3705 0.83 +0.1
4,392,413 + Psyr_3705 0.83 -0.4
4,392,413 + Psyr_3705 0.83 -0.8
4,392,413 + Psyr_3705 0.83 -2.6
4,392,414 - Psyr_3705 0.84 +2.3
4,392,414 - Psyr_3705 0.84 +0.1
4,392,414 - Psyr_3705 0.84 -0.1
4,392,414 - Psyr_3705 0.84 -0.5
4,392,414 - Psyr_3705 0.84 +2.5
4,392,414 - Psyr_3705 0.84 -0.9
4,392,414 - Psyr_3705 0.84 -0.7
4,392,551 + -0.8
4,392,551 + +1.5
4,392,552 - -1.1
4,392,552 - +1.9
4,392,552 - -1.3
4,392,552 - +2.3
4,392,552 - -0.9
4,392,617 + -1.7
4,392,618 - -0.3
4,392,618 - +2.5
4,392,621 + +4.5
4,392,621 + -0.2
4,392,621 + +0.2
4,392,621 + +2.9
4,392,621 + -1.2
4,392,622 - -2.9
4,392,622 - +2.8
4,392,622 - -3.7
4,392,622 - +1.1
4,392,622 - -0.1
4,392,701 - +0.9
4,392,717 - +4.1
4,392,717 - +2.3
4,392,717 - +2.9
4,392,717 - +0.2
4,392,717 - +3.9
4,392,717 - -0.3
4,392,739 - -0.1
4,392,906 + Psyr_3706 0.33 -1.6
4,392,906 + Psyr_3706 0.33 +2.8
4,392,906 + Psyr_3706 0.33 +3.3
4,392,907 - Psyr_3706 0.33 -2.1
4,392,907 - Psyr_3706 0.33 +3.3
4,392,907 - Psyr_3706 0.33 +1.9
4,392,907 - Psyr_3706 0.33 -1.5
4,392,907 - Psyr_3706 0.33 +2.5
4,393,038 + Psyr_3706 0.59 +0.9
4,393,039 - Psyr_3706 0.60 +3.4
4,393,068 + Psyr_3706 0.65 +0.9
4,393,069 - Psyr_3706 0.66 -0.6
4,393,069 - Psyr_3706 0.66 -0.3
4,393,098 + Psyr_3706 0.72 +0.2
4,393,098 + Psyr_3706 0.72 +2.9
4,393,104 + Psyr_3706 0.73 -1.4
4,393,104 + Psyr_3706 0.73 +2.9
4,393,105 - Psyr_3706 0.73 +0.1
4,393,236 + +3.5
4,393,319 + +2.9
4,393,325 + +2.9
4,393,326 - -1.8
4,393,729 + Psyr_3707 0.31 -1.9
4,393,729 + Psyr_3707 0.31 -0.1
4,393,729 + Psyr_3707 0.31 +3.5
4,393,729 + Psyr_3707 0.31 +2.8
4,393,729 + Psyr_3707 0.31 -1.1
4,393,739 + Psyr_3707 0.32 -0.6
4,393,760 - Psyr_3707 0.34 -0.7
4,393,856 + Psyr_3707 0.41 -0.1
4,393,857 - Psyr_3707 0.41 +3.5
4,393,857 - Psyr_3707 0.41 +0.1
4,393,888 + Psyr_3707 0.43 +3.3
4,393,888 + Psyr_3707 0.43 -0.1
4,393,889 - Psyr_3707 0.43 +0.5
4,393,941 + Psyr_3707 0.47 +1.9
4,393,972 + Psyr_3707 0.49 -0.1
4,393,972 + Psyr_3707 0.49 -1.2
4,393,972 + Psyr_3707 0.49 -3.0
4,393,972 + Psyr_3707 0.49 -0.4
4,393,972 + Psyr_3707 0.49 +1.5
4,393,972 + Psyr_3707 0.49 +1.9
4,393,973 - Psyr_3707 0.49 +0.4

Or see this region's nucleotide sequence