Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3701 and Psyr_3702 are separated by 128 nucleotides Psyr_3702 and Psyr_3703 overlap by 4 nucleotides Psyr_3703 and Psyr_3704 are separated by 99 nucleotides Psyr_3704 and Psyr_3705 are separated by 6 nucleotides
Psyr_3701: Psyr_3701 - thioredoxin, putative, at 4,389,396 to 4,389,863
_3701
Psyr_3702: Psyr_3702 - Arsenate reductase, at 4,389,992 to 4,390,345
_3702
Psyr_3703: Psyr_3703 - Flavodoxin/nitric oxide synthase, at 4,390,342 to 4,390,947
_3703
Psyr_3704: Psyr_3704 - conserved hypothetical protein, at 4,391,047 to 4,391,718
_3704
Psyr_3705: Psyr_3705 - conserved hypothetical protein, at 4,391,725 to 4,392,549
_3705
Position (kb) 4390
4391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4389.370 kb on - strand at 4389.496 kb on + strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.497 kb on - strand, within Psyr_3701 at 4389.533 kb on - strand, within Psyr_3701 at 4389.725 kb on - strand, within Psyr_3701 at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.897 kb on + strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.898 kb on - strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.901 kb on + strand at 4389.902 kb on - strand at 4389.902 kb on - strand at 4389.904 kb on - strand at 4389.918 kb on + strand at 4389.933 kb on - strand at 4389.957 kb on + strand at 4389.962 kb on + strand at 4389.962 kb on + strand at 4390.010 kb on + strand at 4390.187 kb on + strand, within Psyr_3702 at 4390.187 kb on + strand, within Psyr_3702 at 4390.187 kb on + strand, within Psyr_3702 at 4390.188 kb on - strand, within Psyr_3702 at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.354 kb on + strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.355 kb on - strand at 4390.369 kb on + strand at 4390.369 kb on + strand at 4390.370 kb on - strand at 4390.370 kb on - strand at 4390.372 kb on + strand at 4390.373 kb on - strand at 4390.522 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.609 kb on + strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.610 kb on - strand, within Psyr_3703 at 4390.677 kb on + strand, within Psyr_3703 at 4391.056 kb on + strand at 4391.056 kb on + strand at 4391.074 kb on + strand at 4391.074 kb on + strand at 4391.178 kb on + strand, within Psyr_3704 at 4391.179 kb on - strand, within Psyr_3704 at 4391.179 kb on - strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.467 kb on + strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.468 kb on - strand, within Psyr_3704 at 4391.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,389,370 - -0.1 4,389,496 + Psyr_3701 0.21 -1.6 4,389,497 - Psyr_3701 0.22 -3.3 4,389,497 - Psyr_3701 0.22 +1.9 4,389,497 - Psyr_3701 0.22 -1.5 4,389,497 - Psyr_3701 0.22 -1.5 4,389,533 - Psyr_3701 0.29 +0.9 4,389,725 - Psyr_3701 0.70 +0.9 4,389,897 + -1.1 4,389,897 + -2.2 4,389,897 + +4.3 4,389,897 + +3.4 4,389,897 + +2.5 4,389,897 + -1.0 4,389,897 + +1.9 4,389,898 - +1.1 4,389,898 - +2.9 4,389,898 - +0.9 4,389,898 - +1.8 4,389,898 - -0.4 4,389,898 - -0.6 4,389,901 + -1.1 4,389,901 + -1.0 4,389,901 + +0.1 4,389,901 + -0.9 4,389,901 + -2.6 4,389,901 + +2.7 4,389,901 + -0.9 4,389,902 - +0.7 4,389,902 - -0.2 4,389,904 - -1.9 4,389,918 + +0.9 4,389,933 - -0.9 4,389,957 + +2.3 4,389,962 + -0.1 4,389,962 + +3.5 4,390,010 + -1.2 4,390,187 + Psyr_3702 0.55 +3.4 4,390,187 + Psyr_3702 0.55 +3.5 4,390,187 + Psyr_3702 0.55 -1.7 4,390,188 - Psyr_3702 0.55 +3.5 4,390,354 + -0.1 4,390,354 + -1.4 4,390,354 + -2.5 4,390,354 + +2.7 4,390,354 + -2.7 4,390,354 + +2.7 4,390,354 + -0.7 4,390,354 + +0.1 4,390,354 + +4.5 4,390,355 - +2.7 4,390,355 - +5.1 4,390,355 - +4.3 4,390,355 - -0.8 4,390,355 - +1.9 4,390,369 + +3.1 4,390,369 + +1.9 4,390,370 - -0.6 4,390,370 - +1.3 4,390,372 + +3.6 4,390,373 - -1.1 4,390,522 + Psyr_3703 0.30 -0.6 4,390,609 + Psyr_3703 0.44 -2.1 4,390,609 + Psyr_3703 0.44 -1.2 4,390,609 + Psyr_3703 0.44 -0.8 4,390,610 - Psyr_3703 0.44 -1.1 4,390,610 - Psyr_3703 0.44 +4.1 4,390,610 - Psyr_3703 0.44 +1.5 4,390,677 + Psyr_3703 0.55 +3.4 4,391,056 + +1.5 4,391,056 + +3.4 4,391,074 + +4.7 4,391,074 + +2.9 4,391,178 + Psyr_3704 0.19 -1.7 4,391,179 - Psyr_3704 0.20 +2.8 4,391,179 - Psyr_3704 0.20 -1.7 4,391,467 + Psyr_3704 0.62 +4.1 4,391,467 + Psyr_3704 0.62 +0.7 4,391,467 + Psyr_3704 0.62 -0.7 4,391,467 + Psyr_3704 0.62 +4.0 4,391,467 + Psyr_3704 0.62 -0.8 4,391,467 + Psyr_3704 0.62 +3.6 4,391,468 - Psyr_3704 0.63 +2.3 4,391,468 - Psyr_3704 0.63 -1.5 4,391,468 - Psyr_3704 0.63 +3.1 4,391,468 - Psyr_3704 0.63 -1.1 4,391,468 - Psyr_3704 0.63 -2.4 4,391,731 - -2.4
Or see this region's nucleotide sequence