Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3689 and Psyr_3690 overlap by 1 nucleotides Psyr_3690 and Psyr_3691 are separated by 8 nucleotides Psyr_3691 and Psyr_3692 are separated by 746 nucleotides
Psyr_3689: Psyr_3689 - phosphoribosylformylglycinamidine cyclo-ligase, at 4,375,674 to 4,376,732
_3689
Psyr_3690: Psyr_3690 - formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase, at 4,376,732 to 4,377,382
_3690
Psyr_3691: Psyr_3691 - conserved hypothetical protein, at 4,377,391 to 4,378,104
_3691
Psyr_3692: Psyr_3692 - conserved hypothetical protein, at 4,378,851 to 4,379,030
_3692
Position (kb) 4377
4378
4379 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4376.704 kb on + strand at 4376.924 kb on + strand, within Psyr_3690 at 4377.061 kb on + strand, within Psyr_3690 at 4377.086 kb on + strand, within Psyr_3690 at 4377.192 kb on + strand, within Psyr_3690 at 4377.193 kb on - strand, within Psyr_3690 at 4377.202 kb on + strand, within Psyr_3690 at 4377.268 kb on + strand, within Psyr_3690 at 4377.268 kb on + strand, within Psyr_3690 at 4377.268 kb on + strand, within Psyr_3690 at 4377.268 kb on + strand, within Psyr_3690 at 4377.268 kb on + strand, within Psyr_3690 at 4377.269 kb on - strand, within Psyr_3690 at 4377.269 kb on - strand, within Psyr_3690 at 4377.269 kb on - strand, within Psyr_3690 at 4377.269 kb on - strand, within Psyr_3690 at 4377.272 kb on + strand, within Psyr_3690 at 4377.348 kb on + strand at 4377.380 kb on + strand at 4377.387 kb on + strand at 4377.387 kb on + strand at 4377.387 kb on + strand at 4377.387 kb on + strand at 4377.387 kb on + strand at 4377.388 kb on - strand at 4377.388 kb on - strand at 4377.388 kb on - strand at 4377.388 kb on - strand at 4377.388 kb on - strand at 4377.388 kb on - strand at 4377.388 kb on - strand at 4377.390 kb on + strand at 4377.390 kb on + strand at 4377.391 kb on - strand at 4377.391 kb on - strand at 4377.391 kb on - strand at 4377.475 kb on + strand, within Psyr_3691 at 4377.475 kb on + strand, within Psyr_3691 at 4377.476 kb on - strand, within Psyr_3691 at 4377.643 kb on + strand, within Psyr_3691 at 4377.643 kb on + strand, within Psyr_3691 at 4377.643 kb on + strand, within Psyr_3691 at 4377.643 kb on + strand, within Psyr_3691 at 4377.643 kb on + strand, within Psyr_3691 at 4377.643 kb on + strand, within Psyr_3691 at 4377.644 kb on - strand, within Psyr_3691 at 4377.644 kb on - strand, within Psyr_3691 at 4377.644 kb on - strand, within Psyr_3691 at 4377.644 kb on - strand, within Psyr_3691 at 4377.669 kb on + strand, within Psyr_3691 at 4377.784 kb on + strand, within Psyr_3691 at 4377.836 kb on - strand, within Psyr_3691 at 4377.868 kb on + strand, within Psyr_3691 at 4377.869 kb on - strand, within Psyr_3691 at 4377.869 kb on - strand, within Psyr_3691 at 4377.869 kb on - strand, within Psyr_3691 at 4377.945 kb on - strand, within Psyr_3691 at 4378.003 kb on + strand, within Psyr_3691 at 4378.004 kb on - strand, within Psyr_3691 at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.048 kb on + strand at 4378.049 kb on - strand at 4378.049 kb on - strand at 4378.186 kb on - strand at 4378.297 kb on - strand at 4378.406 kb on + strand at 4378.406 kb on + strand at 4378.406 kb on + strand at 4378.407 kb on - strand at 4378.407 kb on - strand at 4378.521 kb on - strand at 4378.521 kb on - strand at 4378.679 kb on - strand at 4378.679 kb on - strand at 4378.679 kb on - strand at 4378.745 kb on + strand at 4378.746 kb on - strand at 4378.749 kb on + strand at 4378.750 kb on - strand at 4378.762 kb on - strand at 4378.774 kb on - strand at 4378.844 kb on + strand at 4378.844 kb on + strand at 4378.844 kb on + strand at 4378.844 kb on + strand at 4378.845 kb on - strand at 4378.845 kb on - strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.847 kb on + strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.848 kb on - strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.850 kb on + strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.851 kb on - strand at 4378.865 kb on + strand at 4378.865 kb on + strand at 4378.866 kb on - strand at 4378.986 kb on + strand, within Psyr_3692 at 4378.987 kb on - strand, within Psyr_3692 at 4378.988 kb on + strand, within Psyr_3692
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,376,704 + +2.8 4,376,924 + Psyr_3690 0.29 +2.9 4,377,061 + Psyr_3690 0.51 +3.5 4,377,086 + Psyr_3690 0.54 -2.1 4,377,192 + Psyr_3690 0.71 -0.6 4,377,193 - Psyr_3690 0.71 +2.5 4,377,202 + Psyr_3690 0.72 +2.4 4,377,268 + Psyr_3690 0.82 +4.1 4,377,268 + Psyr_3690 0.82 +0.6 4,377,268 + Psyr_3690 0.82 -1.3 4,377,268 + Psyr_3690 0.82 -0.8 4,377,268 + Psyr_3690 0.82 -4.1 4,377,269 - Psyr_3690 0.82 +1.5 4,377,269 - Psyr_3690 0.82 -0.6 4,377,269 - Psyr_3690 0.82 -0.6 4,377,269 - Psyr_3690 0.82 +4.1 4,377,272 + Psyr_3690 0.83 +2.5 4,377,348 + -3.3 4,377,380 + -0.3 4,377,387 + +1.9 4,377,387 + +0.1 4,377,387 + +0.0 4,377,387 + +1.9 4,377,387 + -2.6 4,377,388 - -0.1 4,377,388 - +0.9 4,377,388 - +3.1 4,377,388 - +3.1 4,377,388 - -3.0 4,377,388 - -1.1 4,377,388 - -1.2 4,377,390 + -2.8 4,377,390 + +1.5 4,377,391 - -2.3 4,377,391 - +0.9 4,377,391 - +0.9 4,377,475 + Psyr_3691 0.12 -1.0 4,377,475 + Psyr_3691 0.12 -0.5 4,377,476 - Psyr_3691 0.12 -2.7 4,377,643 + Psyr_3691 0.35 +0.9 4,377,643 + Psyr_3691 0.35 -1.2 4,377,643 + Psyr_3691 0.35 -2.5 4,377,643 + Psyr_3691 0.35 -4.5 4,377,643 + Psyr_3691 0.35 -2.5 4,377,643 + Psyr_3691 0.35 -0.1 4,377,644 - Psyr_3691 0.35 +2.7 4,377,644 - Psyr_3691 0.35 -0.1 4,377,644 - Psyr_3691 0.35 -3.9 4,377,644 - Psyr_3691 0.35 +1.5 4,377,669 + Psyr_3691 0.39 +1.5 4,377,784 + Psyr_3691 0.55 +0.9 4,377,836 - Psyr_3691 0.62 +1.2 4,377,868 + Psyr_3691 0.67 -2.1 4,377,869 - Psyr_3691 0.67 +1.5 4,377,869 - Psyr_3691 0.67 -1.1 4,377,869 - Psyr_3691 0.67 -2.3 4,377,945 - Psyr_3691 0.78 -2.6 4,378,003 + Psyr_3691 0.86 -2.3 4,378,004 - Psyr_3691 0.86 -2.4 4,378,048 + +2.3 4,378,048 + -0.4 4,378,048 + -4.6 4,378,048 + +1.4 4,378,048 + -0.1 4,378,049 - -0.1 4,378,049 - -1.9 4,378,186 - +1.5 4,378,297 - +2.7 4,378,406 + -0.9 4,378,406 + +1.8 4,378,406 + -2.0 4,378,407 - -1.4 4,378,407 - +3.6 4,378,521 - -1.1 4,378,521 - -0.3 4,378,679 - +2.3 4,378,679 - -1.8 4,378,679 - -0.5 4,378,745 + +1.7 4,378,746 - -0.6 4,378,749 + -1.9 4,378,750 - +0.9 4,378,762 - -1.7 4,378,774 - -1.9 4,378,844 + +1.3 4,378,844 + -1.9 4,378,844 + +0.7 4,378,844 + -2.8 4,378,845 - +2.9 4,378,845 - -0.4 4,378,847 + -3.8 4,378,847 + +3.5 4,378,847 + +0.7 4,378,847 + -0.3 4,378,847 + -0.9 4,378,847 + +2.9 4,378,848 - -0.3 4,378,848 - +4.1 4,378,848 - +2.3 4,378,848 - -1.9 4,378,848 - +4.8 4,378,848 - -3.2 4,378,848 - +3.1 4,378,850 + +2.3 4,378,850 + -0.9 4,378,850 + +2.8 4,378,850 + -2.0 4,378,850 + +1.5 4,378,850 + -3.4 4,378,850 + -1.5 4,378,850 + -1.4 4,378,851 - -0.1 4,378,851 - -1.4 4,378,851 - +1.5 4,378,851 - +0.8 4,378,851 - -1.0 4,378,851 - -1.7 4,378,851 - -2.0 4,378,851 - -2.3 4,378,865 + -0.1 4,378,865 + +2.9 4,378,866 - -0.7 4,378,986 + Psyr_3692 0.75 +3.3 4,378,987 - Psyr_3692 0.76 -0.1 4,378,988 + Psyr_3692 0.76 +1.5
Or see this region's nucleotide sequence