Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3663 and Psyr_3664 are separated by 100 nucleotides Psyr_3664 and Psyr_3665 are separated by 226 nucleotides Psyr_3665 and Psyr_3666 are separated by 408 nucleotides
Psyr_3663: Psyr_3663 - Protein of unknown function DUF6, at 4,349,531 to 4,350,490
_3663
Psyr_3664: Psyr_3664 - DTW, at 4,350,591 to 4,351,190
_3664
Psyr_3665: Psyr_3665 - conserved hypothetical protein, at 4,351,417 to 4,351,719
_3665
Psyr_3666: Psyr_3666 - Protein of unknown function DUF195, at 4,352,128 to 4,353,606
_3666
Position (kb) 4351
4352 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4350.462 kb on + strand at 4350.463 kb on - strand at 4350.509 kb on + strand at 4350.509 kb on + strand at 4350.510 kb on - strand at 4350.510 kb on - strand at 4350.510 kb on - strand at 4350.510 kb on - strand at 4350.529 kb on - strand at 4350.555 kb on - strand at 4350.555 kb on - strand at 4350.555 kb on - strand at 4350.620 kb on - strand at 4350.913 kb on + strand, within Psyr_3664 at 4350.913 kb on + strand, within Psyr_3664 at 4350.914 kb on - strand, within Psyr_3664 at 4350.914 kb on - strand, within Psyr_3664 at 4350.914 kb on - strand, within Psyr_3664 at 4350.914 kb on - strand, within Psyr_3664 at 4350.914 kb on - strand, within Psyr_3664 at 4351.286 kb on + strand at 4351.344 kb on - strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.376 kb on + strand at 4351.377 kb on - strand at 4351.377 kb on - strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.387 kb on + strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.388 kb on - strand at 4351.458 kb on - strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.469 kb on + strand, within Psyr_3665 at 4351.470 kb on - strand, within Psyr_3665 at 4351.659 kb on - strand, within Psyr_3665 at 4351.733 kb on + strand at 4351.872 kb on + strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.873 kb on - strand at 4351.893 kb on + strand at 4351.894 kb on - strand at 4351.894 kb on - strand at 4351.928 kb on + strand at 4351.928 kb on + strand at 4351.928 kb on + strand at 4351.929 kb on - strand at 4351.929 kb on - strand at 4351.948 kb on + strand at 4351.949 kb on - strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.989 kb on + strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4351.990 kb on - strand at 4352.066 kb on + strand at 4352.066 kb on + strand at 4352.066 kb on + strand at 4352.066 kb on + strand at 4352.067 kb on - strand at 4352.067 kb on - strand at 4352.067 kb on - strand at 4352.288 kb on + strand, within Psyr_3666 at 4352.289 kb on - strand, within Psyr_3666 at 4352.361 kb on - strand, within Psyr_3666 at 4352.600 kb on + strand, within Psyr_3666 at 4352.600 kb on + strand, within Psyr_3666 at 4352.601 kb on - strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.644 kb on + strand, within Psyr_3666 at 4352.645 kb on - strand, within Psyr_3666 at 4352.645 kb on - strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.696 kb on + strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666 at 4352.697 kb on - strand, within Psyr_3666
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,350,462 + +0.7 4,350,463 - +1.9 4,350,509 + -1.8 4,350,509 + +2.7 4,350,510 - +4.3 4,350,510 - +3.4 4,350,510 - +4.1 4,350,510 - -1.2 4,350,529 - +2.5 4,350,555 - -1.1 4,350,555 - -1.6 4,350,555 - +0.5 4,350,620 - -2.3 4,350,913 + Psyr_3664 0.54 -1.3 4,350,913 + Psyr_3664 0.54 +2.3 4,350,914 - Psyr_3664 0.54 -1.2 4,350,914 - Psyr_3664 0.54 -0.3 4,350,914 - Psyr_3664 0.54 +0.3 4,350,914 - Psyr_3664 0.54 +2.2 4,350,914 - Psyr_3664 0.54 -0.9 4,351,286 + +2.5 4,351,344 - +3.4 4,351,376 + -0.1 4,351,376 + +1.9 4,351,376 + -1.1 4,351,376 + -0.1 4,351,376 + +2.7 4,351,376 + -2.4 4,351,377 - +0.3 4,351,377 - +4.3 4,351,387 + -1.6 4,351,387 + +0.5 4,351,387 + +3.4 4,351,387 + +0.4 4,351,387 + -1.5 4,351,388 - +2.3 4,351,388 - -1.3 4,351,388 - +3.5 4,351,388 - -0.6 4,351,388 - -1.3 4,351,388 - -0.8 4,351,458 - Psyr_3665 0.14 -0.1 4,351,469 + Psyr_3665 0.17 -0.1 4,351,469 + Psyr_3665 0.17 -0.7 4,351,469 + Psyr_3665 0.17 -0.1 4,351,469 + Psyr_3665 0.17 -1.2 4,351,469 + Psyr_3665 0.17 -0.1 4,351,470 - Psyr_3665 0.17 -2.6 4,351,659 - Psyr_3665 0.80 -1.2 4,351,733 + -1.5 4,351,872 + +3.1 4,351,873 - -1.8 4,351,873 - +0.9 4,351,873 - +3.7 4,351,873 - +0.9 4,351,873 - -1.7 4,351,893 + -2.3 4,351,894 - -0.3 4,351,894 - +1.9 4,351,928 + -1.9 4,351,928 + -0.8 4,351,928 + +4.0 4,351,929 - -0.1 4,351,929 - -1.9 4,351,948 + -1.3 4,351,949 - -2.0 4,351,989 + +2.5 4,351,989 + -1.6 4,351,989 + +2.3 4,351,989 + +0.9 4,351,990 - +3.5 4,351,990 - +2.5 4,351,990 - -2.0 4,351,990 - +4.0 4,351,990 - +4.1 4,351,990 - +3.1 4,351,990 - -1.1 4,351,990 - +2.5 4,351,990 - -0.4 4,352,066 + -2.3 4,352,066 + -1.4 4,352,066 + +0.1 4,352,066 + +1.9 4,352,067 - -0.8 4,352,067 - -0.6 4,352,067 - -0.1 4,352,288 + Psyr_3666 0.11 -1.8 4,352,289 - Psyr_3666 0.11 +0.3 4,352,361 - Psyr_3666 0.16 -1.4 4,352,600 + Psyr_3666 0.32 +1.9 4,352,600 + Psyr_3666 0.32 -0.4 4,352,601 - Psyr_3666 0.32 -0.7 4,352,644 + Psyr_3666 0.35 -1.5 4,352,644 + Psyr_3666 0.35 -0.3 4,352,644 + Psyr_3666 0.35 -0.1 4,352,644 + Psyr_3666 0.35 -0.6 4,352,644 + Psyr_3666 0.35 +0.9 4,352,645 - Psyr_3666 0.35 +3.1 4,352,645 - Psyr_3666 0.35 -1.2 4,352,696 + Psyr_3666 0.38 +3.4 4,352,696 + Psyr_3666 0.38 +0.8 4,352,696 + Psyr_3666 0.38 +0.9 4,352,696 + Psyr_3666 0.38 -1.0 4,352,696 + Psyr_3666 0.38 -1.3 4,352,696 + Psyr_3666 0.38 +1.5 4,352,696 + Psyr_3666 0.38 +3.6 4,352,696 + Psyr_3666 0.38 -0.1 4,352,696 + Psyr_3666 0.38 +1.9 4,352,697 - Psyr_3666 0.38 -0.7 4,352,697 - Psyr_3666 0.38 +0.7 4,352,697 - Psyr_3666 0.38 -1.1 4,352,697 - Psyr_3666 0.38 -2.4 4,352,697 - Psyr_3666 0.38 +2.5 4,352,697 - Psyr_3666 0.38 -0.8 4,352,697 - Psyr_3666 0.38 -1.6 4,352,697 - Psyr_3666 0.38 +3.5 4,352,697 - Psyr_3666 0.38 +2.7 4,352,697 - Psyr_3666 0.38 -0.9 4,352,697 - Psyr_3666 0.38 -0.5 4,352,697 - Psyr_3666 0.38 +0.1 4,352,697 - Psyr_3666 0.38 +3.5 4,352,697 - Psyr_3666 0.38 +3.1 4,352,697 - Psyr_3666 0.38 +0.1 4,352,697 - Psyr_3666 0.38 +0.3 4,352,697 - Psyr_3666 0.38 -1.6
Or see this region's nucleotide sequence