Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3615

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
4,298,070	-		Psyr_3613	0.60	-0.1
4,298,105	+		Psyr_3613	0.67	-0.1
4,298,107	+		Psyr_3613	0.67	-3.5
4,298,108	-		Psyr_3613	0.68	+2.7
4,298,137	+		Psyr_3613	0.74	-2.9
4,298,137	+		Psyr_3613	0.74	+0.2
4,298,137	+		Psyr_3613	0.74	+4.4
4,298,137	+		Psyr_3613	0.74	-0.1
4,298,137	+		Psyr_3613	0.74	-1.9
4,298,137	+		Psyr_3613	0.74	+2.9
4,298,137	+		Psyr_3613	0.74	-1.4
4,298,137	+		Psyr_3613	0.74	-0.4
4,298,137	+		Psyr_3613	0.74	-0.4
4,298,137	+		Psyr_3613	0.74	-1.7
4,298,137	+		Psyr_3613	0.74	-1.2
4,298,138	-		Psyr_3613	0.74	-1.3
4,298,138	-		Psyr_3613	0.74	-0.5
4,298,138	-		Psyr_3613	0.74	+0.9
4,298,138	-		Psyr_3613	0.74	-1.4
4,298,138	-		Psyr_3613	0.74	+0.3
4,298,323	+				+0.4
4,298,324	-				+2.3
4,298,324	-				+0.0
4,298,466	-		Psyr_3614	0.36	+0.4
4,298,506	+		Psyr_3614	0.46	-0.5
4,298,507	-		Psyr_3614	0.47	-1.1
4,298,507	-		Psyr_3614	0.47	+1.5
4,298,507	-		Psyr_3614	0.47	+0.9
4,298,584	+		Psyr_3614	0.66	-2.9
4,298,584	+		Psyr_3614	0.66	+1.9
4,298,585	-		Psyr_3614	0.66	+3.4
4,298,585	-		Psyr_3614	0.66	+1.9
4,298,585	-		Psyr_3614	0.66	+2.7
4,298,612	-		Psyr_3614	0.73	-2.8
4,298,612	-		Psyr_3614	0.73	-1.3
4,298,612	-		Psyr_3614	0.73	-1.6
4,298,612	-		Psyr_3614	0.73	+1.8
4,298,659	+		Psyr_3614	0.85	-0.2
4,298,659	+		Psyr_3614	0.85	+2.5
4,298,659	+		Psyr_3614	0.85	+3.7
4,298,660	-		Psyr_3614	0.85	-1.9
4,298,721	+				-0.6
4,298,721	+				-0.1
4,298,721	+				+0.6
4,298,721	+				-2.5
4,298,721	+				-0.1
4,298,721	+				+0.5
4,298,721	+				-3.0
4,298,721	+				+2.7
4,298,722	-				+0.9
4,298,722	-				+4.7
4,298,752	+				+3.1
4,298,752	+				+0.9
4,298,752	+				-1.3
4,298,753	-				-0.3
4,298,753	-				+3.4
4,298,779	+				+0.9
4,298,779	+				+3.5
4,298,779	+				-1.6
4,298,780	-				-1.6
4,298,780	-				+1.5
4,298,780	-				-2.6
4,298,825	+				-1.4
4,298,852	+				+3.7
4,298,852	+				+3.5
4,298,945	+				+2.7
4,298,945	+				+3.4
4,298,945	+				+3.3
4,298,946	-				+3.3
4,298,946	-				+4.1
4,299,104	+		Psyr_3615	0.16	-0.8
4,299,104	+		Psyr_3615	0.16	-0.7
4,299,152	+		Psyr_3615	0.20	+0.1
4,299,152	+		Psyr_3615	0.20	+0.5
4,299,153	-		Psyr_3615	0.20	-0.5
4,299,153	-		Psyr_3615	0.20	-2.1
4,299,153	-		Psyr_3615	0.20	-4.0
4,299,155	+		Psyr_3615	0.21	-0.0
4,299,155	+		Psyr_3615	0.21	-2.5
4,299,156	-		Psyr_3615	0.21	-0.7
4,299,197	+		Psyr_3615	0.24	+0.0
4,299,197	+		Psyr_3615	0.24	+2.7
4,299,197	+		Psyr_3615	0.24	-2.2
4,299,197	+		Psyr_3615	0.24	+0.9
4,299,198	-		Psyr_3615	0.24	-0.3
4,299,198	-		Psyr_3615	0.24	-0.2
4,299,198	-		Psyr_3615	0.24	+0.9
4,299,198	-		Psyr_3615	0.24	+3.1
4,299,339	-		Psyr_3615	0.36	+1.5
4,299,339	-		Psyr_3615	0.36	-2.5
4,299,455	+		Psyr_3615	0.45	+2.7
4,299,456	-		Psyr_3615	0.45	+0.3
4,299,469	-		Psyr_3615	0.46	-0.1
4,299,469	-		Psyr_3615	0.46	-0.5
4,299,503	-		Psyr_3615	0.49	+0.0
4,299,503	-		Psyr_3615	0.49	+1.5
4,299,503	-		Psyr_3615	0.49	-0.3
4,299,545	+		Psyr_3615	0.53	+0.6
4,299,546	-		Psyr_3615	0.53	-2.3
4,299,546	-		Psyr_3615	0.53	+2.3
4,299,546	-		Psyr_3615	0.53	+4.2
4,299,626	+		Psyr_3615	0.59	-1.3
4,299,692	+		Psyr_3615	0.65	+3.5
4,299,692	+		Psyr_3615	0.65	-2.5
4,299,692	+		Psyr_3615	0.65	+0.3
4,299,692	+		Psyr_3615	0.65	-1.5
4,299,693	-		Psyr_3615	0.65	+3.1
4,299,693	-		Psyr_3615	0.65	+0.4
4,299,693	-		Psyr_3615	0.65	+1.5
4,299,693	-		Psyr_3615	0.65	-0.3
4,299,693	-		Psyr_3615	0.65	-1.0
4,299,693	-		Psyr_3615	0.65	-1.8
4,299,693	-		Psyr_3615	0.65	+3.1
4,299,741	+		Psyr_3615	0.69	+2.3
4,299,742	-		Psyr_3615	0.69	+2.9
4,299,899	+		Psyr_3615	0.82	+0.7
4,299,899	+		Psyr_3615	0.82	-2.4
4,299,899	+		Psyr_3615	0.82	-0.4
4,299,899	+		Psyr_3615	0.82	+3.5
4,299,899	+		Psyr_3615	0.82	+2.9
4,299,899	+		Psyr_3615	0.82	+0.6
4,299,900	-		Psyr_3615	0.82	-0.8
4,299,900	-		Psyr_3615	0.82	-0.8
4,299,900	-		Psyr_3615	0.82	-0.3
4,300,000	+				+0.7
4,300,020	-				-2.6
4,300,171	+				-2.7
4,300,172	-				+2.3
4,300,264	+				+0.4
4,300,300	-				+0.6
4,300,333	+				+0.5
4,300,333	+				+1.5
4,300,333	+				-3.5
4,300,333	+				+0.3
4,300,333	+				-0.2
4,300,333	+				-1.9
4,300,333	+				-0.4
4,300,333	+				-2.2
4,300,333	+				+1.9
4,300,333	+				-0.9
4,300,333	+				-1.3
4,300,333	+				+3.9
4,300,333	+				+1.5
4,300,333	+				+0.9
4,300,334	-				+0.4
4,300,334	-				+1.0
4,300,334	-				-0.8
4,300,334	-				+4.1
4,300,334	-				+4.2
4,300,334	-				+3.3
4,300,334	-				-0.3
4,300,334	-				+0.9
4,300,334	-				+0.9
4,300,334	-				-0.4
4,300,334	-				+4.7
4,300,334	-				-1.2
4,300,334	-				+1.4
4,300,334	-				+2.7
4,300,335	+				-1.6
4,300,335	+				-0.1
4,300,335	+				+2.9
4,300,335	+				+3.5
4,300,335	+				+2.9
4,300,335	+				+3.4
4,300,335	+				-1.3
4,300,335	+				+2.9
4,300,335	+				-2.5
4,300,336	-				-0.1
4,300,336	-				+4.5
4,300,336	-				-0.7
4,300,336	-				-4.0
4,300,336	-				+0.3
4,300,336	-				+1.5
4,300,336	-				-1.6
4,300,336	-				+1.1
4,300,336	-				-0.2
4,300,336	-				+3.7
4,300,338	-				+2.5
4,300,352	+				+1.5
4,300,353	-				-0.2
4,300,353	-				+0.6
4,300,353	-				+0.5
4,300,353	-				+0.5
4,300,356	+				+3.4
4,300,356	+				+3.1
4,300,356	+				-1.9
4,300,356	+				-2.7
4,300,356	+				-1.4
4,300,356	+				+2.7
4,300,356	+				-1.5
4,300,357	-				-0.1
4,300,357	-				-0.6
4,300,357	-				+3.5
4,300,357	-				+4.2
4,300,357	-				-1.4
4,300,357	-				+3.4
4,300,357	-				+3.4
4,300,357	-				-2.9
4,300,357	-				+0.3
4,300,357	-				+2.9
4,300,357	-				+3.7
4,300,357	-				-0.1
4,300,357	-				-1.1
4,300,360	+				+1.9
4,300,360	+				-0.3
4,300,361	-				+3.8
4,300,697	+		Psyr_3616	0.35	+3.3
4,300,711	-		Psyr_3616	0.37	+0.2
4,300,971	+		Psyr_3616	0.66	+1.5
4,300,971	+		Psyr_3616	0.66	+4.3
4,300,971	+		Psyr_3616	0.66	+0.1
4,300,971	+		Psyr_3616	0.66	+5.0
4,300,971	+		Psyr_3616	0.66	-0.4
4,300,971	+		Psyr_3616	0.66	-0.2
4,300,972	-		Psyr_3616	0.66	+0.6
4,300,972	-		Psyr_3616	0.66	-1.9
4,300,972	-		Psyr_3616	0.66	-1.1
4,300,974	+		Psyr_3616	0.67	+0.3
4,300,974	+		Psyr_3616	0.67	+3.6
4,300,974	+		Psyr_3616	0.67	+1.7
4,300,974	+		Psyr_3616	0.67	+0.1
4,300,974	+		Psyr_3616	0.67	-1.8
4,300,975	-		Psyr_3616	0.67	+2.3
4,300,975	-		Psyr_3616	0.67	-3.6
4,300,975	-		Psyr_3616	0.67	-0.1
4,300,975	-		Psyr_3616	0.67	+2.3
4,300,975	-		Psyr_3616	0.67	-3.1
4,300,975	-		Psyr_3616	0.67	-0.8
4,300,975	-		Psyr_3616	0.67	-1.2
4,300,975	-		Psyr_3616	0.67	-2.1
4,300,975	-		Psyr_3616	0.67	-2.2
4,300,975	-		Psyr_3616	0.67	+1.9
4,300,975	-		Psyr_3616	0.67	+0.0