Experiment: KB with Acridine orange 62.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3610 and Psyr_3611 overlap by 4 nucleotides Psyr_3611 and Psyr_3612 are separated by 46 nucleotides Psyr_3612 and Psyr_3613 are separated by 4 nucleotides Psyr_3613 and Psyr_3614 are separated by 57 nucleotides
Psyr_3610: Psyr_3610 - GAF, at 4,293,968 to 4,294,450
_3610
Psyr_3611: Psyr_3611 - Protein of unknown function DUF815, at 4,294,447 to 4,295,337
_3611
Psyr_3612: Psyr_3612 - Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 4,295,384 to 4,297,774
_3612
Psyr_3613: Psyr_3613 - Glutathione peroxidase, at 4,297,779 to 4,298,264
_3613
Psyr_3614: Psyr_3614 - Protein of unknown function DUF25, at 4,298,322 to 4,298,717
_3614
Position (kb) 4295
4296
4297
4298 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 4294.634 kb on + strand, within Psyr_3611 at 4294.802 kb on + strand, within Psyr_3611 at 4294.802 kb on + strand, within Psyr_3611 at 4294.803 kb on - strand, within Psyr_3611 at 4294.846 kb on + strand, within Psyr_3611 at 4294.847 kb on - strand, within Psyr_3611 at 4295.109 kb on + strand, within Psyr_3611 at 4295.348 kb on + strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.349 kb on - strand at 4295.350 kb on + strand at 4295.350 kb on + strand at 4295.350 kb on + strand at 4295.350 kb on + strand at 4295.351 kb on - strand at 4295.351 kb on - strand at 4295.351 kb on - strand at 4295.351 kb on - strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.354 kb on + strand at 4295.355 kb on - strand at 4295.355 kb on - strand at 4295.362 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.428 kb on + strand at 4295.429 kb on - strand at 4295.429 kb on - strand at 4295.429 kb on - strand at 4295.430 kb on + strand at 4295.430 kb on + strand at 4295.430 kb on + strand at 4295.431 kb on - strand at 4295.431 kb on - strand at 4295.431 kb on - strand at 4295.431 kb on - strand at 4295.612 kb on + strand at 4295.612 kb on + strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.613 kb on - strand at 4295.614 kb on + strand at 4295.614 kb on + strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.615 kb on - strand at 4295.843 kb on + strand, within Psyr_3612 at 4295.844 kb on - strand, within Psyr_3612 at 4295.961 kb on - strand, within Psyr_3612 at 4296.043 kb on - strand, within Psyr_3612 at 4296.056 kb on + strand, within Psyr_3612 at 4296.261 kb on + strand, within Psyr_3612 at 4296.261 kb on + strand, within Psyr_3612 at 4296.261 kb on + strand, within Psyr_3612 at 4296.262 kb on - strand, within Psyr_3612 at 4296.262 kb on - strand, within Psyr_3612 at 4296.262 kb on - strand, within Psyr_3612 at 4296.334 kb on + strand, within Psyr_3612 at 4296.334 kb on + strand, within Psyr_3612 at 4296.335 kb on - strand, within Psyr_3612 at 4296.411 kb on + strand, within Psyr_3612 at 4296.412 kb on - strand, within Psyr_3612 at 4296.460 kb on + strand, within Psyr_3612 at 4296.855 kb on - strand, within Psyr_3612 at 4297.187 kb on - strand, within Psyr_3612 at 4297.187 kb on - strand, within Psyr_3612 at 4297.335 kb on + strand, within Psyr_3612 at 4297.384 kb on + strand, within Psyr_3612 at 4297.385 kb on - strand, within Psyr_3612 at 4298.070 kb on - strand, within Psyr_3613 at 4298.105 kb on + strand, within Psyr_3613 at 4298.107 kb on + strand, within Psyr_3613 at 4298.108 kb on - strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.137 kb on + strand, within Psyr_3613 at 4298.138 kb on - strand, within Psyr_3613 at 4298.138 kb on - strand, within Psyr_3613 at 4298.138 kb on - strand, within Psyr_3613 at 4298.138 kb on - strand, within Psyr_3613 at 4298.138 kb on - strand, within Psyr_3613 at 4298.323 kb on + strand at 4298.324 kb on - strand at 4298.324 kb on - strand at 4298.466 kb on - strand, within Psyr_3614 at 4298.506 kb on + strand, within Psyr_3614 at 4298.507 kb on - strand, within Psyr_3614 at 4298.507 kb on - strand, within Psyr_3614 at 4298.507 kb on - strand, within Psyr_3614 at 4298.584 kb on + strand, within Psyr_3614 at 4298.584 kb on + strand, within Psyr_3614 at 4298.585 kb on - strand, within Psyr_3614 at 4298.585 kb on - strand, within Psyr_3614 at 4298.585 kb on - strand, within Psyr_3614 at 4298.612 kb on - strand, within Psyr_3614 at 4298.612 kb on - strand, within Psyr_3614 at 4298.612 kb on - strand, within Psyr_3614 at 4298.612 kb on - strand, within Psyr_3614 at 4298.659 kb on + strand, within Psyr_3614 at 4298.659 kb on + strand, within Psyr_3614 at 4298.659 kb on + strand, within Psyr_3614 at 4298.660 kb on - strand, within Psyr_3614 at 4298.721 kb on + strand at 4298.721 kb on + strand at 4298.721 kb on + strand at 4298.721 kb on + strand at 4298.721 kb on + strand at 4298.721 kb on + strand at 4298.721 kb on + strand at 4298.721 kb on + strand at 4298.722 kb on - strand at 4298.722 kb on - strand at 4298.752 kb on + strand at 4298.752 kb on + strand at 4298.752 kb on + strand at 4298.753 kb on - strand at 4298.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml remove 4,294,634 + Psyr_3611 0.21 -2.5 4,294,802 + Psyr_3611 0.40 -1.9 4,294,802 + Psyr_3611 0.40 -1.8 4,294,803 - Psyr_3611 0.40 +1.9 4,294,846 + Psyr_3611 0.45 +5.5 4,294,847 - Psyr_3611 0.45 -0.1 4,295,109 + Psyr_3611 0.74 -2.7 4,295,348 + -1.4 4,295,349 - -3.1 4,295,349 - +1.5 4,295,349 - -2.8 4,295,349 - +1.9 4,295,349 - +1.9 4,295,349 - -0.1 4,295,349 - +0.9 4,295,350 + +2.9 4,295,350 + +3.1 4,295,350 + +1.1 4,295,350 + +3.8 4,295,351 - -1.6 4,295,351 - -0.1 4,295,351 - -1.2 4,295,351 - +2.3 4,295,354 + +3.6 4,295,354 + +2.3 4,295,354 + -0.6 4,295,354 + -0.1 4,295,354 + +3.4 4,295,354 + -0.6 4,295,354 + +1.2 4,295,355 - -0.7 4,295,355 - -0.1 4,295,362 + -0.7 4,295,428 + +2.3 4,295,428 + -1.0 4,295,428 + +3.3 4,295,428 + -1.9 4,295,428 + +1.5 4,295,429 - -1.4 4,295,429 - +2.3 4,295,429 - -2.9 4,295,430 + +2.7 4,295,430 + -1.9 4,295,430 + -0.8 4,295,431 - -1.1 4,295,431 - +2.4 4,295,431 - +0.9 4,295,431 - -1.4 4,295,612 + +1.9 4,295,612 + -1.0 4,295,613 - +2.3 4,295,613 - -1.2 4,295,613 - -1.2 4,295,613 - +0.9 4,295,613 - -1.1 4,295,614 + -2.0 4,295,614 + -3.9 4,295,615 - +2.5 4,295,615 - -0.1 4,295,615 - -5.2 4,295,615 - -1.8 4,295,615 - -0.8 4,295,843 + Psyr_3612 0.19 +0.1 4,295,844 - Psyr_3612 0.19 -0.1 4,295,961 - Psyr_3612 0.24 -0.7 4,296,043 - Psyr_3612 0.28 +2.3 4,296,056 + Psyr_3612 0.28 -0.6 4,296,261 + Psyr_3612 0.37 -0.9 4,296,261 + Psyr_3612 0.37 +2.9 4,296,261 + Psyr_3612 0.37 +2.0 4,296,262 - Psyr_3612 0.37 +2.7 4,296,262 - Psyr_3612 0.37 +2.5 4,296,262 - Psyr_3612 0.37 -1.4 4,296,334 + Psyr_3612 0.40 +2.7 4,296,334 + Psyr_3612 0.40 -2.7 4,296,335 - Psyr_3612 0.40 +1.9 4,296,411 + Psyr_3612 0.43 -0.2 4,296,412 - Psyr_3612 0.43 +0.2 4,296,460 + Psyr_3612 0.45 +0.3 4,296,855 - Psyr_3612 0.62 +1.2 4,297,187 - Psyr_3612 0.75 +4.5 4,297,187 - Psyr_3612 0.75 +1.5 4,297,335 + Psyr_3612 0.82 -2.6 4,297,384 + Psyr_3612 0.84 +0.9 4,297,385 - Psyr_3612 0.84 -0.8 4,298,070 - Psyr_3613 0.60 -0.1 4,298,105 + Psyr_3613 0.67 -0.1 4,298,107 + Psyr_3613 0.67 -3.5 4,298,108 - Psyr_3613 0.68 +2.7 4,298,137 + Psyr_3613 0.74 -2.9 4,298,137 + Psyr_3613 0.74 +0.2 4,298,137 + Psyr_3613 0.74 +4.4 4,298,137 + Psyr_3613 0.74 -0.1 4,298,137 + Psyr_3613 0.74 -1.9 4,298,137 + Psyr_3613 0.74 +2.9 4,298,137 + Psyr_3613 0.74 -1.4 4,298,137 + Psyr_3613 0.74 -0.4 4,298,137 + Psyr_3613 0.74 -0.4 4,298,137 + Psyr_3613 0.74 -1.7 4,298,137 + Psyr_3613 0.74 -1.2 4,298,138 - Psyr_3613 0.74 -1.3 4,298,138 - Psyr_3613 0.74 -0.5 4,298,138 - Psyr_3613 0.74 +0.9 4,298,138 - Psyr_3613 0.74 -1.4 4,298,138 - Psyr_3613 0.74 +0.3 4,298,323 + +0.4 4,298,324 - +2.3 4,298,324 - +0.0 4,298,466 - Psyr_3614 0.36 +0.4 4,298,506 + Psyr_3614 0.46 -0.5 4,298,507 - Psyr_3614 0.47 -1.1 4,298,507 - Psyr_3614 0.47 +1.5 4,298,507 - Psyr_3614 0.47 +0.9 4,298,584 + Psyr_3614 0.66 -2.9 4,298,584 + Psyr_3614 0.66 +1.9 4,298,585 - Psyr_3614 0.66 +3.4 4,298,585 - Psyr_3614 0.66 +1.9 4,298,585 - Psyr_3614 0.66 +2.7 4,298,612 - Psyr_3614 0.73 -2.8 4,298,612 - Psyr_3614 0.73 -1.3 4,298,612 - Psyr_3614 0.73 -1.6 4,298,612 - Psyr_3614 0.73 +1.8 4,298,659 + Psyr_3614 0.85 -0.2 4,298,659 + Psyr_3614 0.85 +2.5 4,298,659 + Psyr_3614 0.85 +3.7 4,298,660 - Psyr_3614 0.85 -1.9 4,298,721 + -0.6 4,298,721 + -0.1 4,298,721 + +0.6 4,298,721 + -2.5 4,298,721 + -0.1 4,298,721 + +0.5 4,298,721 + -3.0 4,298,721 + +2.7 4,298,722 - +0.9 4,298,722 - +4.7 4,298,752 + +3.1 4,298,752 + +0.9 4,298,752 + -1.3 4,298,753 - -0.3 4,298,753 - +3.4
Or see this region's nucleotide sequence