Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3537

Experiment: KB with Acridine orange 62.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3535 and Psyr_3536 overlap by 31 nucleotidesPsyr_3536 and Psyr_3537 are separated by 217 nucleotidesPsyr_3537 and Psyr_3538 are separated by 117 nucleotidesPsyr_3538 and Psyr_3539 are separated by 255 nucleotides Psyr_3535: Psyr_3535 - conserved hypothetical protein, at 4,213,798 to 4,214,592 _3535 Psyr_3536: Psyr_3536 - hypothetical protein, at 4,214,562 to 4,214,981 _3536 Psyr_3537: Psyr_3537 - hydrolase, at 4,215,199 to 4,216,062 _3537 Psyr_3538: Psyr_3538 - transcriptional regulator, TetR family, at 4,216,180 to 4,216,782 _3538 Psyr_3539: Psyr_3539 - Short-chain dehydrogenase/reductase SDR, at 4,217,038 to 4,217,826 _3539 Position (kb) 4215 4216 4217Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 4214.230 kb on + strand, within Psyr_3535at 4214.230 kb on + strand, within Psyr_3535at 4214.230 kb on + strand, within Psyr_3535at 4214.231 kb on - strand, within Psyr_3535at 4214.231 kb on - strand, within Psyr_3535at 4214.231 kb on - strand, within Psyr_3535at 4214.476 kb on + strand, within Psyr_3535at 4214.477 kb on - strand, within Psyr_3535at 4214.477 kb on - strand, within Psyr_3535at 4214.525 kb on + strandat 4214.525 kb on + strandat 4214.525 kb on + strandat 4214.525 kb on + strandat 4214.563 kb on + strandat 4214.564 kb on - strandat 4214.574 kb on + strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.575 kb on - strandat 4214.646 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.674 kb on + strand, within Psyr_3536at 4214.675 kb on - strand, within Psyr_3536at 4214.710 kb on - strand, within Psyr_3536at 4214.755 kb on + strand, within Psyr_3536at 4214.756 kb on - strand, within Psyr_3536at 4214.756 kb on - strand, within Psyr_3536at 4214.756 kb on - strand, within Psyr_3536at 4214.834 kb on + strand, within Psyr_3536at 4214.835 kb on - strand, within Psyr_3536at 4214.871 kb on + strand, within Psyr_3536at 4214.872 kb on - strand, within Psyr_3536at 4214.872 kb on - strand, within Psyr_3536at 4214.972 kb on + strandat 4215.126 kb on + strandat 4215.127 kb on - strandat 4215.127 kb on - strandat 4215.149 kb on + strandat 4215.159 kb on - strandat 4215.239 kb on - strandat 4215.285 kb on + strandat 4215.311 kb on - strand, within Psyr_3537at 4215.417 kb on - strand, within Psyr_3537at 4215.472 kb on + strand, within Psyr_3537at 4215.472 kb on + strand, within Psyr_3537at 4215.472 kb on + strand, within Psyr_3537at 4215.473 kb on - strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.511 kb on + strand, within Psyr_3537at 4215.512 kb on - strand, within Psyr_3537at 4215.522 kb on + strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.523 kb on - strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.681 kb on + strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.682 kb on - strand, within Psyr_3537at 4215.788 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.818 kb on + strand, within Psyr_3537at 4215.819 kb on - strand, within Psyr_3537at 4215.819 kb on - strand, within Psyr_3537at 4215.819 kb on - strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.848 kb on + strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.849 kb on - strand, within Psyr_3537at 4215.971 kb on + strand, within Psyr_3537at 4216.034 kb on - strandat 4216.100 kb on + strandat 4216.150 kb on + strandat 4216.150 kb on + strandat 4216.151 kb on - strandat 4216.167 kb on + strandat 4216.167 kb on + strandat 4216.177 kb on + strandat 4216.177 kb on + strandat 4216.177 kb on + strandat 4216.177 kb on + strandat 4216.177 kb on + strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.178 kb on - strandat 4216.207 kb on + strandat 4216.207 kb on + strandat 4216.207 kb on + strandat 4216.208 kb on - strandat 4216.387 kb on + strand, within Psyr_3538at 4216.388 kb on - strand, within Psyr_3538at 4216.388 kb on - strand, within Psyr_3538at 4216.462 kb on + strand, within Psyr_3538at 4216.462 kb on + strand, within Psyr_3538at 4216.463 kb on - strand, within Psyr_3538at 4216.463 kb on - strand, within Psyr_3538at 4216.463 kb on - strand, within Psyr_3538at 4216.466 kb on + strand, within Psyr_3538at 4216.466 kb on + strand, within Psyr_3538at 4216.466 kb on + strand, within Psyr_3538at 4216.466 kb on + strand, within Psyr_3538at 4216.467 kb on - strand, within Psyr_3538at 4216.467 kb on - strand, within Psyr_3538at 4216.467 kb on - strand, within Psyr_3538at 4216.467 kb on - strand, within Psyr_3538at 4216.467 kb on - strand, within Psyr_3538at 4216.520 kb on + strand, within Psyr_3538at 4216.520 kb on + strand, within Psyr_3538at 4216.521 kb on - strand, within Psyr_3538at 4216.545 kb on + strand, within Psyr_3538at 4216.545 kb on + strand, within Psyr_3538at 4216.545 kb on + strand, within Psyr_3538at 4216.546 kb on - strand, within Psyr_3538at 4216.546 kb on - strand, within Psyr_3538at 4216.560 kb on + strand, within Psyr_3538at 4216.561 kb on - strand, within Psyr_3538at 4216.561 kb on - strand, within Psyr_3538at 4216.610 kb on - strand, within Psyr_3538at 4216.691 kb on + strand, within Psyr_3538at 4216.792 kb on + strandat 4217.022 kb on + strandat 4217.023 kb on - strandat 4217.023 kb on - strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.028 kb on + strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strandat 4217.029 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
remove
4,214,230 + Psyr_3535 0.54 +0.4
4,214,230 + Psyr_3535 0.54 -1.1
4,214,230 + Psyr_3535 0.54 -0.4
4,214,231 - Psyr_3535 0.54 +2.9
4,214,231 - Psyr_3535 0.54 +2.7
4,214,231 - Psyr_3535 0.54 +2.5
4,214,476 + Psyr_3535 0.85 +4.4
4,214,477 - Psyr_3535 0.85 -0.9
4,214,477 - Psyr_3535 0.85 +2.9
4,214,525 + -0.1
4,214,525 + -1.8
4,214,525 + +0.0
4,214,525 + +2.2
4,214,563 + -1.5
4,214,564 - +4.3
4,214,574 + -3.6
4,214,575 - -1.4
4,214,575 - -1.1
4,214,575 - +1.8
4,214,575 - +0.0
4,214,575 - +1.5
4,214,646 + Psyr_3536 0.20 +1.5
4,214,674 + Psyr_3536 0.27 +3.5
4,214,674 + Psyr_3536 0.27 -0.9
4,214,674 + Psyr_3536 0.27 +0.7
4,214,674 + Psyr_3536 0.27 -0.0
4,214,675 - Psyr_3536 0.27 +2.5
4,214,710 - Psyr_3536 0.35 -0.7
4,214,755 + Psyr_3536 0.46 -2.7
4,214,756 - Psyr_3536 0.46 -0.8
4,214,756 - Psyr_3536 0.46 +1.5
4,214,756 - Psyr_3536 0.46 +2.5
4,214,834 + Psyr_3536 0.65 -0.6
4,214,835 - Psyr_3536 0.65 -0.7
4,214,871 + Psyr_3536 0.74 -2.0
4,214,872 - Psyr_3536 0.74 -0.5
4,214,872 - Psyr_3536 0.74 -1.2
4,214,972 + -0.7
4,215,126 + +3.6
4,215,127 - -5.1
4,215,127 - -1.7
4,215,149 + -1.4
4,215,159 - -0.1
4,215,239 - -2.1
4,215,285 + +0.8
4,215,311 - Psyr_3537 0.13 +0.9
4,215,417 - Psyr_3537 0.25 -1.7
4,215,472 + Psyr_3537 0.32 +3.1
4,215,472 + Psyr_3537 0.32 +3.7
4,215,472 + Psyr_3537 0.32 +0.9
4,215,473 - Psyr_3537 0.32 -1.8
4,215,511 + Psyr_3537 0.36 +0.9
4,215,511 + Psyr_3537 0.36 -0.3
4,215,511 + Psyr_3537 0.36 -1.0
4,215,511 + Psyr_3537 0.36 -1.1
4,215,511 + Psyr_3537 0.36 -1.8
4,215,512 - Psyr_3537 0.36 +1.5
4,215,522 + Psyr_3537 0.37 +1.5
4,215,523 - Psyr_3537 0.38 -2.1
4,215,523 - Psyr_3537 0.38 +1.5
4,215,523 - Psyr_3537 0.38 -0.7
4,215,523 - Psyr_3537 0.38 +0.9
4,215,681 + Psyr_3537 0.56 +4.5
4,215,681 + Psyr_3537 0.56 +1.9
4,215,681 + Psyr_3537 0.56 +2.9
4,215,681 + Psyr_3537 0.56 +1.9
4,215,682 - Psyr_3537 0.56 -2.5
4,215,682 - Psyr_3537 0.56 +1.5
4,215,682 - Psyr_3537 0.56 -3.7
4,215,682 - Psyr_3537 0.56 -0.5
4,215,788 + Psyr_3537 0.68 +1.5
4,215,818 + Psyr_3537 0.72 +0.1
4,215,818 + Psyr_3537 0.72 -1.3
4,215,818 + Psyr_3537 0.72 +0.3
4,215,818 + Psyr_3537 0.72 +2.9
4,215,819 - Psyr_3537 0.72 +0.3
4,215,819 - Psyr_3537 0.72 +2.2
4,215,819 - Psyr_3537 0.72 -1.5
4,215,848 + Psyr_3537 0.75 +2.7
4,215,848 + Psyr_3537 0.75 +2.5
4,215,848 + Psyr_3537 0.75 -2.1
4,215,848 + Psyr_3537 0.75 +3.8
4,215,848 + Psyr_3537 0.75 -0.4
4,215,848 + Psyr_3537 0.75 -0.1
4,215,848 + Psyr_3537 0.75 +0.2
4,215,848 + Psyr_3537 0.75 +0.5
4,215,848 + Psyr_3537 0.75 -2.6
4,215,848 + Psyr_3537 0.75 +2.5
4,215,848 + Psyr_3537 0.75 +1.5
4,215,848 + Psyr_3537 0.75 +2.5
4,215,848 + Psyr_3537 0.75 -0.5
4,215,848 + Psyr_3537 0.75 -0.8
4,215,848 + Psyr_3537 0.75 +2.9
4,215,848 + Psyr_3537 0.75 +0.0
4,215,849 - Psyr_3537 0.75 +0.9
4,215,849 - Psyr_3537 0.75 +1.5
4,215,849 - Psyr_3537 0.75 -0.2
4,215,849 - Psyr_3537 0.75 +0.1
4,215,849 - Psyr_3537 0.75 +1.1
4,215,849 - Psyr_3537 0.75 -1.5
4,215,849 - Psyr_3537 0.75 -4.4
4,215,849 - Psyr_3537 0.75 +1.7
4,215,849 - Psyr_3537 0.75 +3.3
4,215,849 - Psyr_3537 0.75 +2.5
4,215,849 - Psyr_3537 0.75 -0.5
4,215,849 - Psyr_3537 0.75 -0.7
4,215,971 + Psyr_3537 0.89 +2.3
4,216,034 - +0.8
4,216,100 + -0.7
4,216,150 + -3.1
4,216,150 + +0.9
4,216,151 - +0.5
4,216,167 + +2.5
4,216,167 + -1.2
4,216,177 + -0.1
4,216,177 + +3.3
4,216,177 + +3.1
4,216,177 + +0.0
4,216,177 + -1.2
4,216,178 - -1.2
4,216,178 - +2.1
4,216,178 - -0.8
4,216,178 - -0.9
4,216,178 - -1.6
4,216,178 - +2.7
4,216,178 - -0.1
4,216,178 - +1.9
4,216,178 - -1.6
4,216,178 - -0.1
4,216,178 - -1.4
4,216,178 - -1.6
4,216,207 + -0.1
4,216,207 + +1.8
4,216,207 + +1.9
4,216,208 - -1.4
4,216,387 + Psyr_3538 0.34 -0.8
4,216,388 - Psyr_3538 0.34 -0.3
4,216,388 - Psyr_3538 0.34 +4.6
4,216,462 + Psyr_3538 0.47 +2.5
4,216,462 + Psyr_3538 0.47 -0.4
4,216,463 - Psyr_3538 0.47 -0.3
4,216,463 - Psyr_3538 0.47 +4.0
4,216,463 - Psyr_3538 0.47 -1.4
4,216,466 + Psyr_3538 0.47 -0.1
4,216,466 + Psyr_3538 0.47 +2.9
4,216,466 + Psyr_3538 0.47 +2.9
4,216,466 + Psyr_3538 0.47 -2.2
4,216,467 - Psyr_3538 0.48 -1.8
4,216,467 - Psyr_3538 0.48 -2.6
4,216,467 - Psyr_3538 0.48 +4.6
4,216,467 - Psyr_3538 0.48 +0.9
4,216,467 - Psyr_3538 0.48 -2.3
4,216,520 + Psyr_3538 0.56 -2.6
4,216,520 + Psyr_3538 0.56 -2.2
4,216,521 - Psyr_3538 0.57 +1.9
4,216,545 + Psyr_3538 0.61 -1.3
4,216,545 + Psyr_3538 0.61 -2.7
4,216,545 + Psyr_3538 0.61 -1.6
4,216,546 - Psyr_3538 0.61 +1.5
4,216,546 - Psyr_3538 0.61 -1.0
4,216,560 + Psyr_3538 0.63 -2.0
4,216,561 - Psyr_3538 0.63 +3.1
4,216,561 - Psyr_3538 0.63 +3.1
4,216,610 - Psyr_3538 0.71 +3.2
4,216,691 + Psyr_3538 0.85 +3.3
4,216,792 + -1.2
4,217,022 + +0.5
4,217,023 - +3.8
4,217,023 - +0.0
4,217,028 + -1.1
4,217,028 + -0.3
4,217,028 + +1.2
4,217,028 + +0.9
4,217,028 + -0.5
4,217,028 + -1.8
4,217,029 - -1.2
4,217,029 - -2.1
4,217,029 - +1.9
4,217,029 - -1.2
4,217,029 - +2.2
4,217,029 - -1.2
4,217,029 - +2.5

Or see this region's nucleotide sequence