Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3513

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3512 and Psyr_3513 are separated by 11 nucleotidesPsyr_3513 and Psyr_3514 are separated by 42 nucleotides Psyr_3512: Psyr_3512 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 4,186,583 to 4,187,956 _3512 Psyr_3513: Psyr_3513 - FAD dependent oxidoreductase, at 4,187,968 to 4,189,254 _3513 Psyr_3514: Psyr_3514 - delta-1-piperideine-6-carboxylate dehydrogenase, at 4,189,297 to 4,190,787 _3514 Position (kb) 4187 4188 4189 4190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4187.040 kb on + strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.041 kb on - strand, within Psyr_3512at 4187.215 kb on - strand, within Psyr_3512at 4187.810 kb on + strand, within Psyr_3512at 4187.810 kb on + strand, within Psyr_3512at 4187.810 kb on + strand, within Psyr_3512at 4187.811 kb on - strand, within Psyr_3512at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.284 kb on + strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.285 kb on - strand, within Psyr_3513at 4188.332 kb on + strand, within Psyr_3513at 4188.411 kb on + strand, within Psyr_3513at 4188.485 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.488 kb on + strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.489 kb on - strand, within Psyr_3513at 4188.491 kb on + strand, within Psyr_3513at 4188.539 kb on + strand, within Psyr_3513at 4188.540 kb on - strand, within Psyr_3513at 4188.574 kb on + strand, within Psyr_3513at 4188.574 kb on + strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.575 kb on - strand, within Psyr_3513at 4188.695 kb on + strand, within Psyr_3513at 4188.695 kb on + strand, within Psyr_3513at 4188.695 kb on + strand, within Psyr_3513at 4188.696 kb on - strand, within Psyr_3513at 4188.696 kb on - strand, within Psyr_3513at 4188.696 kb on - strand, within Psyr_3513at 4188.992 kb on - strand, within Psyr_3513at 4188.992 kb on - strand, within Psyr_3513at 4189.278 kb on - strandat 4189.280 kb on + strandat 4189.280 kb on + strandat 4189.280 kb on + strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.281 kb on - strandat 4189.340 kb on + strandat 4189.340 kb on + strandat 4189.340 kb on + strandat 4189.341 kb on - strandat 4189.370 kb on + strandat 4189.370 kb on + strandat 4189.370 kb on + strandat 4189.370 kb on + strandat 4189.370 kb on + strandat 4189.371 kb on - strandat 4189.371 kb on - strandat 4189.371 kb on - strandat 4189.371 kb on - strandat 4189.564 kb on + strand, within Psyr_3514at 4189.616 kb on + strand, within Psyr_3514at 4189.616 kb on + strand, within Psyr_3514at 4189.691 kb on + strand, within Psyr_3514at 4189.692 kb on - strand, within Psyr_3514at 4189.692 kb on - strand, within Psyr_3514at 4189.692 kb on - strand, within Psyr_3514at 4189.692 kb on - strand, within Psyr_3514at 4189.692 kb on - strand, within Psyr_3514at 4189.692 kb on - strand, within Psyr_3514at 4189.692 kb on - strand, within Psyr_3514at 4189.706 kb on + strand, within Psyr_3514at 4189.707 kb on - strand, within Psyr_3514

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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4,187,040 + Psyr_3512 0.33 -0.8
4,187,041 - Psyr_3512 0.33 +2.9
4,187,041 - Psyr_3512 0.33 -0.1
4,187,041 - Psyr_3512 0.33 -3.6
4,187,041 - Psyr_3512 0.33 +3.2
4,187,215 - Psyr_3512 0.46 -0.5
4,187,810 + Psyr_3512 0.89 -0.3
4,187,810 + Psyr_3512 0.89 +1.9
4,187,810 + Psyr_3512 0.89 +1.5
4,187,811 - Psyr_3512 0.89 +2.4
4,188,284 + Psyr_3513 0.25 +3.7
4,188,284 + Psyr_3513 0.25 +0.1
4,188,284 + Psyr_3513 0.25 +1.9
4,188,284 + Psyr_3513 0.25 +1.9
4,188,284 + Psyr_3513 0.25 +1.7
4,188,284 + Psyr_3513 0.25 +3.0
4,188,284 + Psyr_3513 0.25 -1.5
4,188,284 + Psyr_3513 0.25 -0.0
4,188,285 - Psyr_3513 0.25 -1.7
4,188,285 - Psyr_3513 0.25 +2.3
4,188,285 - Psyr_3513 0.25 +0.9
4,188,285 - Psyr_3513 0.25 -0.3
4,188,285 - Psyr_3513 0.25 +0.5
4,188,285 - Psyr_3513 0.25 +1.9
4,188,285 - Psyr_3513 0.25 +0.8
4,188,332 + Psyr_3513 0.28 +1.9
4,188,411 + Psyr_3513 0.34 -1.0
4,188,485 + Psyr_3513 0.40 +0.9
4,188,488 + Psyr_3513 0.40 -1.0
4,188,488 + Psyr_3513 0.40 +0.7
4,188,488 + Psyr_3513 0.40 +3.9
4,188,488 + Psyr_3513 0.40 +3.0
4,188,488 + Psyr_3513 0.40 +0.8
4,188,489 - Psyr_3513 0.40 +0.1
4,188,489 - Psyr_3513 0.40 +1.1
4,188,489 - Psyr_3513 0.40 -0.1
4,188,489 - Psyr_3513 0.40 -1.9
4,188,489 - Psyr_3513 0.40 +1.2
4,188,491 + Psyr_3513 0.41 -0.1
4,188,539 + Psyr_3513 0.44 +3.4
4,188,540 - Psyr_3513 0.44 +0.4
4,188,574 + Psyr_3513 0.47 -1.1
4,188,574 + Psyr_3513 0.47 +2.2
4,188,575 - Psyr_3513 0.47 -1.1
4,188,575 - Psyr_3513 0.47 -1.1
4,188,575 - Psyr_3513 0.47 -3.0
4,188,575 - Psyr_3513 0.47 +2.7
4,188,695 + Psyr_3513 0.56 -1.2
4,188,695 + Psyr_3513 0.56 +1.4
4,188,695 + Psyr_3513 0.56 -1.9
4,188,696 - Psyr_3513 0.57 -0.7
4,188,696 - Psyr_3513 0.57 +0.7
4,188,696 - Psyr_3513 0.57 -0.3
4,188,992 - Psyr_3513 0.80 -2.2
4,188,992 - Psyr_3513 0.80 -0.5
4,189,278 - +0.3
4,189,280 + +3.6
4,189,280 + +0.1
4,189,280 + -0.4
4,189,281 - -1.5
4,189,281 - +0.3
4,189,281 - -2.4
4,189,281 - +3.0
4,189,281 - -1.1
4,189,281 - -0.9
4,189,281 - +2.9
4,189,281 - +1.9
4,189,281 - -1.1
4,189,281 - +2.4
4,189,340 + +3.3
4,189,340 + +1.9
4,189,340 + -0.4
4,189,341 - +1.5
4,189,370 + -0.1
4,189,370 + +2.9
4,189,370 + -0.2
4,189,370 + -0.1
4,189,370 + -1.7
4,189,371 - +2.7
4,189,371 - -3.0
4,189,371 - -0.0
4,189,371 - -1.2
4,189,564 + Psyr_3514 0.18 +3.8
4,189,616 + Psyr_3514 0.21 +0.9
4,189,616 + Psyr_3514 0.21 +1.9
4,189,691 + Psyr_3514 0.26 -0.6
4,189,692 - Psyr_3514 0.26 +3.3
4,189,692 - Psyr_3514 0.26 +0.1
4,189,692 - Psyr_3514 0.26 -1.3
4,189,692 - Psyr_3514 0.26 -0.1
4,189,692 - Psyr_3514 0.26 +2.2
4,189,692 - Psyr_3514 0.26 +3.9
4,189,692 - Psyr_3514 0.26 -0.4
4,189,706 + Psyr_3514 0.27 -1.2
4,189,707 - Psyr_3514 0.27 -0.6

Or see this region's nucleotide sequence