Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3500

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
4,169,691	+		Psyr_3499	0.14	-0.2
4,169,691	+		Psyr_3499	0.14	-0.6
4,169,691	+		Psyr_3499	0.14	+2.1
4,169,691	+		Psyr_3499	0.14	+2.1
4,169,692	-		Psyr_3499	0.14	-1.0
4,169,692	-		Psyr_3499	0.14	+4.1
4,169,692	-		Psyr_3499	0.14	-0.9
4,169,692	-		Psyr_3499	0.14	-2.3
4,169,692	-		Psyr_3499	0.14	+2.1
4,170,042	+		Psyr_3499	0.54	-0.2
4,170,043	-		Psyr_3499	0.54	+0.6
4,170,066	+		Psyr_3499	0.57	+4.0
4,170,067	-		Psyr_3499	0.57	+2.8
4,170,157	+		Psyr_3499	0.67	-0.8
4,170,158	-		Psyr_3499	0.68	+0.1
4,170,273	+		Psyr_3499	0.81	-1.4
4,170,274	-		Psyr_3499	0.81	-0.7
4,170,477	+				-1.9
4,170,477	+				-2.0
4,170,500	+				+0.8
4,170,500	+				+0.4
4,170,500	+				-0.5
4,170,500	+				-1.1
4,170,500	+				+0.0
4,170,642	+				-2.2
4,170,705	-				+1.8
4,170,705	-				-2.6
4,170,705	-				+3.0
4,170,891	-		Psyr_3500	0.25	+0.1
4,170,956	+		Psyr_3500	0.31	+1.4
4,170,956	+		Psyr_3500	0.31	-1.5
4,170,956	+		Psyr_3500	0.31	+1.8
4,170,956	+		Psyr_3500	0.31	-1.2
4,170,957	-		Psyr_3500	0.31	+1.8
4,170,957	-		Psyr_3500	0.31	-1.0
4,170,957	-		Psyr_3500	0.31	-1.3
4,171,052	+		Psyr_3500	0.39	+0.8
4,171,052	+		Psyr_3500	0.39	+0.6
4,171,052	+		Psyr_3500	0.39	+2.1
4,171,052	+		Psyr_3500	0.39	-3.4
4,171,052	+		Psyr_3500	0.39	+0.8
4,171,052	+		Psyr_3500	0.39	+0.0
4,171,052	+		Psyr_3500	0.39	-1.5
4,171,052	+		Psyr_3500	0.39	+4.2
4,171,053	-		Psyr_3500	0.39	-0.6
4,171,156	-		Psyr_3500	0.48	-0.9
4,171,193	+		Psyr_3500	0.51	-1.2
4,171,256	+		Psyr_3500	0.56	-1.1
4,171,256	+		Psyr_3500	0.56	-2.3
4,171,257	-		Psyr_3500	0.56	-1.0
4,171,257	-		Psyr_3500	0.56	-1.8
4,171,257	-		Psyr_3500	0.56	-0.0
4,171,257	-		Psyr_3500	0.56	-0.5
4,171,257	-		Psyr_3500	0.56	+0.2
4,171,425	-		Psyr_3500	0.70	+3.1
4,171,542	-		Psyr_3500	0.80	-0.1
4,171,574	+		Psyr_3500	0.83	+0.5
4,171,574	+		Psyr_3500	0.83	+1.0
4,171,575	-		Psyr_3500	0.83	+2.4
4,171,645	+		Psyr_3500	0.89	-1.1
4,171,645	+		Psyr_3500	0.89	-3.8
4,171,700	+				+3.5
4,171,701	-				-2.0
4,171,703	+				+0.5
4,171,703	+				+2.1
4,171,703	+				-0.2
4,171,703	+				+3.0
4,171,703	+				+0.2
4,171,704	-				-2.0
4,171,704	-				-1.7
4,171,704	-				-1.8
4,171,704	-				-1.0
4,171,745	+				-0.3
4,171,745	+				+0.6
4,171,745	+				+1.8
4,171,745	+				+1.4
4,171,746	-				+0.4
4,171,746	-				+2.4
4,171,746	-				+3.1
4,171,746	-				+1.4
4,171,746	-				+3.4
4,171,746	-				-0.2
4,171,746	-				+2.1
4,171,746	-				+3.6
4,171,823	+				+4.4
4,171,914	+				-2.3
4,171,914	+				+1.4
4,171,914	+				+2.4
4,171,914	+				-4.0
4,171,914	+				+3.0
4,171,915	-				+4.4
4,171,915	-				+1.4
4,171,915	-				-0.2
4,171,915	-				-3.6
4,171,915	-				-0.3
4,171,915	-				-0.6
4,171,915	-				+1.4
4,171,915	-				-0.3
4,171,915	-				+2.8
4,171,915	-				+2.6
4,171,935	+				+3.6
4,171,935	+				+3.3
4,171,936	-				+1.8
4,171,936	-				+1.7
4,171,936	-				-1.2
4,171,940	-				-2.0
4,171,940	-				-1.9
4,171,940	-				+1.4
4,171,940	-				-1.1
4,171,940	-				-0.5
4,171,947	+				+0.5
4,171,949	+				+0.8
4,171,950	-				-1.0
4,171,951	+				+0.8
4,171,951	+				-0.2
4,171,951	+				+0.2
4,171,952	-				+0.2
4,171,952	-				+2.6
4,171,952	-				-0.2
4,172,033	+				-2.0
4,172,065	+				-0.2
4,172,066	-				+0.8
4,172,078	+				+3.4
4,172,079	-				+2.2
4,172,090	+				+1.8
4,172,090	+				+0.2
4,172,091	-				+2.4
4,172,163	-		Psyr_3501	0.14	-0.3
4,172,195	+		Psyr_3501	0.16	+1.4
4,172,272	+		Psyr_3501	0.22	-0.6
4,172,272	+		Psyr_3501	0.22	+4.5
4,172,273	-		Psyr_3501	0.22	-1.0
4,172,327	+		Psyr_3501	0.26	-0.1
4,172,327	+		Psyr_3501	0.26	-0.3
4,172,327	+		Psyr_3501	0.26	+2.2
4,172,327	+		Psyr_3501	0.26	+3.6
4,172,328	-		Psyr_3501	0.26	+3.2
4,172,328	-		Psyr_3501	0.26	-1.0
4,172,328	-		Psyr_3501	0.26	+3.8
4,172,388	-		Psyr_3501	0.31	+2.8
4,172,388	-		Psyr_3501	0.31	+2.8
4,172,740	-		Psyr_3501	0.57	+3.2
4,172,755	+		Psyr_3501	0.58	-0.2
4,172,755	+		Psyr_3501	0.58	+1.8
4,172,759	+		Psyr_3501	0.59	+2.6
4,172,759	+		Psyr_3501	0.59	-3.1
4,172,759	+		Psyr_3501	0.59	-0.2
4,172,759	+		Psyr_3501	0.59	+4.1
4,172,759	+		Psyr_3501	0.59	+0.7
4,172,760	-		Psyr_3501	0.59	+1.4
4,172,760	-		Psyr_3501	0.59	+0.1
4,172,760	-		Psyr_3501	0.59	+3.0
4,172,760	-		Psyr_3501	0.59	+3.6
4,172,760	-		Psyr_3501	0.59	+3.2
4,172,760	-		Psyr_3501	0.59	-0.5