Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3499

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3498 and Psyr_3499 are separated by 51 nucleotidesPsyr_3499 and Psyr_3500 are separated by 153 nucleotides Psyr_3498: Psyr_3498 - Conserved hypothetical protein 730, at 4,168,112 to 4,169,518 _3498 Psyr_3499: Psyr_3499 - transcriptional regulator, AraC family, at 4,169,570 to 4,170,439 _3499 Psyr_3500: Psyr_3500 - 4-hydroxybenzoate 3-monooxygenase, at 4,170,593 to 4,171,777 _3500 Position (kb) 4169 4170 4171Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4168.631 kb on - strand, within Psyr_3498at 4168.641 kb on - strand, within Psyr_3498at 4168.641 kb on - strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.646 kb on + strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.647 kb on - strand, within Psyr_3498at 4168.950 kb on - strand, within Psyr_3498at 4169.033 kb on + strand, within Psyr_3498at 4169.033 kb on + strand, within Psyr_3498at 4169.033 kb on + strand, within Psyr_3498at 4169.094 kb on - strand, within Psyr_3498at 4169.490 kb on - strandat 4169.490 kb on - strandat 4169.532 kb on + strandat 4169.572 kb on - strandat 4169.691 kb on + strand, within Psyr_3499at 4169.691 kb on + strand, within Psyr_3499at 4169.691 kb on + strand, within Psyr_3499at 4169.691 kb on + strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4169.692 kb on - strand, within Psyr_3499at 4170.042 kb on + strand, within Psyr_3499at 4170.043 kb on - strand, within Psyr_3499at 4170.066 kb on + strand, within Psyr_3499at 4170.067 kb on - strand, within Psyr_3499at 4170.157 kb on + strand, within Psyr_3499at 4170.158 kb on - strand, within Psyr_3499at 4170.273 kb on + strand, within Psyr_3499at 4170.274 kb on - strand, within Psyr_3499at 4170.477 kb on + strandat 4170.477 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strandat 4170.500 kb on + strandat 4170.642 kb on + strandat 4170.705 kb on - strandat 4170.705 kb on - strandat 4170.705 kb on - strandat 4170.891 kb on - strand, within Psyr_3500at 4170.956 kb on + strand, within Psyr_3500at 4170.956 kb on + strand, within Psyr_3500at 4170.956 kb on + strand, within Psyr_3500at 4170.956 kb on + strand, within Psyr_3500at 4170.957 kb on - strand, within Psyr_3500at 4170.957 kb on - strand, within Psyr_3500at 4170.957 kb on - strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.052 kb on + strand, within Psyr_3500at 4171.053 kb on - strand, within Psyr_3500at 4171.156 kb on - strand, within Psyr_3500at 4171.193 kb on + strand, within Psyr_3500at 4171.256 kb on + strand, within Psyr_3500at 4171.256 kb on + strand, within Psyr_3500at 4171.257 kb on - strand, within Psyr_3500at 4171.257 kb on - strand, within Psyr_3500at 4171.257 kb on - strand, within Psyr_3500at 4171.257 kb on - strand, within Psyr_3500at 4171.257 kb on - strand, within Psyr_3500at 4171.425 kb on - strand, within Psyr_3500

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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4,168,631 - Psyr_3498 0.37 -0.3
4,168,641 - Psyr_3498 0.38 -1.0
4,168,641 - Psyr_3498 0.38 +0.8
4,168,646 + Psyr_3498 0.38 -2.3
4,168,646 + Psyr_3498 0.38 +0.2
4,168,646 + Psyr_3498 0.38 +3.1
4,168,646 + Psyr_3498 0.38 +1.8
4,168,646 + Psyr_3498 0.38 -1.6
4,168,646 + Psyr_3498 0.38 -1.8
4,168,646 + Psyr_3498 0.38 +0.3
4,168,646 + Psyr_3498 0.38 +1.8
4,168,647 - Psyr_3498 0.38 -2.8
4,168,647 - Psyr_3498 0.38 -0.2
4,168,647 - Psyr_3498 0.38 +3.1
4,168,647 - Psyr_3498 0.38 -1.9
4,168,647 - Psyr_3498 0.38 -0.8
4,168,950 - Psyr_3498 0.60 -0.4
4,169,033 + Psyr_3498 0.65 -1.1
4,169,033 + Psyr_3498 0.65 -2.4
4,169,033 + Psyr_3498 0.65 +1.8
4,169,094 - Psyr_3498 0.70 +0.4
4,169,490 - -0.4
4,169,490 - +1.7
4,169,532 + +3.3
4,169,572 - +0.7
4,169,691 + Psyr_3499 0.14 -0.2
4,169,691 + Psyr_3499 0.14 -0.6
4,169,691 + Psyr_3499 0.14 +2.1
4,169,691 + Psyr_3499 0.14 +2.1
4,169,692 - Psyr_3499 0.14 -1.0
4,169,692 - Psyr_3499 0.14 +4.1
4,169,692 - Psyr_3499 0.14 -0.9
4,169,692 - Psyr_3499 0.14 -2.3
4,169,692 - Psyr_3499 0.14 +2.1
4,170,042 + Psyr_3499 0.54 -0.2
4,170,043 - Psyr_3499 0.54 +0.6
4,170,066 + Psyr_3499 0.57 +4.0
4,170,067 - Psyr_3499 0.57 +2.8
4,170,157 + Psyr_3499 0.67 -0.8
4,170,158 - Psyr_3499 0.68 +0.1
4,170,273 + Psyr_3499 0.81 -1.4
4,170,274 - Psyr_3499 0.81 -0.7
4,170,477 + -1.9
4,170,477 + -2.0
4,170,500 + +0.8
4,170,500 + +0.4
4,170,500 + -0.5
4,170,500 + -1.1
4,170,500 + +0.0
4,170,642 + -2.2
4,170,705 - +1.8
4,170,705 - -2.6
4,170,705 - +3.0
4,170,891 - Psyr_3500 0.25 +0.1
4,170,956 + Psyr_3500 0.31 +1.4
4,170,956 + Psyr_3500 0.31 -1.5
4,170,956 + Psyr_3500 0.31 +1.8
4,170,956 + Psyr_3500 0.31 -1.2
4,170,957 - Psyr_3500 0.31 +1.8
4,170,957 - Psyr_3500 0.31 -1.0
4,170,957 - Psyr_3500 0.31 -1.3
4,171,052 + Psyr_3500 0.39 +0.8
4,171,052 + Psyr_3500 0.39 +0.6
4,171,052 + Psyr_3500 0.39 +2.1
4,171,052 + Psyr_3500 0.39 -3.4
4,171,052 + Psyr_3500 0.39 +0.8
4,171,052 + Psyr_3500 0.39 +0.0
4,171,052 + Psyr_3500 0.39 -1.5
4,171,052 + Psyr_3500 0.39 +4.2
4,171,053 - Psyr_3500 0.39 -0.6
4,171,156 - Psyr_3500 0.48 -0.9
4,171,193 + Psyr_3500 0.51 -1.2
4,171,256 + Psyr_3500 0.56 -1.1
4,171,256 + Psyr_3500 0.56 -2.3
4,171,257 - Psyr_3500 0.56 -1.0
4,171,257 - Psyr_3500 0.56 -1.8
4,171,257 - Psyr_3500 0.56 -0.0
4,171,257 - Psyr_3500 0.56 -0.5
4,171,257 - Psyr_3500 0.56 +0.2
4,171,425 - Psyr_3500 0.70 +3.1

Or see this region's nucleotide sequence