Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3492

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3491 and Psyr_3492 are separated by 54 nucleotidesPsyr_3492 and Psyr_3493 are separated by 100 nucleotides Psyr_3491: Psyr_3491 - Major facilitator superfamily, at 4,159,382 to 4,160,803 _3491 Psyr_3492: Psyr_3492 - L-glutamine synthetase, at 4,160,858 to 4,162,201 _3492 Psyr_3493: Psyr_3493 - conserved hypothetical protein, at 4,162,302 to 4,163,213 _3493 Position (kb) 4160 4161 4162 4163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4160.002 kb on + strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.003 kb on - strand, within Psyr_3491at 4160.003 kb on - strand, within Psyr_3491at 4160.134 kb on - strand, within Psyr_3491at 4160.183 kb on + strand, within Psyr_3491at 4160.373 kb on - strand, within Psyr_3491at 4160.385 kb on + strand, within Psyr_3491at 4160.386 kb on - strand, within Psyr_3491at 4160.386 kb on - strand, within Psyr_3491at 4160.400 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.469 kb on + strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.470 kb on - strand, within Psyr_3491at 4160.594 kb on - strand, within Psyr_3491at 4160.652 kb on + strand, within Psyr_3491at 4160.652 kb on + strand, within Psyr_3491at 4160.652 kb on + strand, within Psyr_3491at 4160.653 kb on - strand, within Psyr_3491at 4160.653 kb on - strand, within Psyr_3491at 4160.653 kb on - strand, within Psyr_3491at 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.721 kb on + strandat 4160.722 kb on - strandat 4160.769 kb on + strandat 4160.769 kb on + strandat 4160.898 kb on - strandat 4160.943 kb on + strandat 4160.944 kb on - strandat 4160.944 kb on - strandat 4161.022 kb on + strand, within Psyr_3492at 4161.023 kb on - strand, within Psyr_3492at 4161.023 kb on - strand, within Psyr_3492at 4161.138 kb on + strand, within Psyr_3492at 4161.209 kb on + strand, within Psyr_3492at 4161.209 kb on + strand, within Psyr_3492at 4161.210 kb on - strand, within Psyr_3492at 4161.262 kb on - strand, within Psyr_3492at 4161.392 kb on + strand, within Psyr_3492at 4161.392 kb on + strand, within Psyr_3492at 4161.392 kb on + strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.393 kb on - strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.651 kb on + strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.652 kb on - strand, within Psyr_3492at 4161.835 kb on - strand, within Psyr_3492at 4162.003 kb on - strand, within Psyr_3492at 4162.101 kb on - strandat 4162.137 kb on - strandat 4162.215 kb on + strandat 4162.215 kb on + strandat 4162.215 kb on + strandat 4162.215 kb on + strandat 4162.216 kb on - strandat 4162.491 kb on + strand, within Psyr_3493at 4162.491 kb on + strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.666 kb on + strand, within Psyr_3493at 4162.666 kb on + strand, within Psyr_3493at 4162.667 kb on - strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.878 kb on + strand, within Psyr_3493at 4162.966 kb on + strand, within Psyr_3493at 4162.966 kb on + strand, within Psyr_3493at 4162.967 kb on - strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.071 kb on + strand, within Psyr_3493at 4163.071 kb on + strand, within Psyr_3493at 4163.072 kb on - strand, within Psyr_3493at 4163.072 kb on - strand, within Psyr_3493at 4163.175 kb on + strandat 4163.175 kb on + strandat 4163.176 kb on - strandat 4163.176 kb on - strandat 4163.195 kb on - strandat 4163.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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4,160,002 + Psyr_3491 0.44 -0.2
4,160,002 + Psyr_3491 0.44 +3.3
4,160,002 + Psyr_3491 0.44 -2.3
4,160,003 - Psyr_3491 0.44 -2.5
4,160,003 - Psyr_3491 0.44 -1.2
4,160,134 - Psyr_3491 0.53 -2.2
4,160,183 + Psyr_3491 0.56 -0.2
4,160,373 - Psyr_3491 0.70 +0.2
4,160,385 + Psyr_3491 0.71 +4.5
4,160,386 - Psyr_3491 0.71 +4.7
4,160,386 - Psyr_3491 0.71 -1.3
4,160,400 + Psyr_3491 0.72 +0.6
4,160,469 + Psyr_3491 0.76 -0.2
4,160,469 + Psyr_3491 0.76 -1.3
4,160,469 + Psyr_3491 0.76 +2.8
4,160,469 + Psyr_3491 0.76 +2.1
4,160,469 + Psyr_3491 0.76 -3.2
4,160,469 + Psyr_3491 0.76 +1.1
4,160,469 + Psyr_3491 0.76 -1.5
4,160,469 + Psyr_3491 0.76 -1.4
4,160,469 + Psyr_3491 0.76 +2.4
4,160,469 + Psyr_3491 0.76 +4.1
4,160,469 + Psyr_3491 0.76 +2.1
4,160,470 - Psyr_3491 0.77 +2.1
4,160,470 - Psyr_3491 0.77 -0.6
4,160,470 - Psyr_3491 0.77 +0.8
4,160,470 - Psyr_3491 0.77 +3.6
4,160,470 - Psyr_3491 0.77 +1.8
4,160,470 - Psyr_3491 0.77 -2.3
4,160,470 - Psyr_3491 0.77 +1.4
4,160,470 - Psyr_3491 0.77 -0.5
4,160,470 - Psyr_3491 0.77 +2.0
4,160,470 - Psyr_3491 0.77 +2.6
4,160,470 - Psyr_3491 0.77 -0.8
4,160,470 - Psyr_3491 0.77 -2.1
4,160,594 - Psyr_3491 0.85 +3.3
4,160,652 + Psyr_3491 0.89 -1.8
4,160,652 + Psyr_3491 0.89 -1.0
4,160,652 + Psyr_3491 0.89 +1.4
4,160,653 - Psyr_3491 0.89 +3.3
4,160,653 - Psyr_3491 0.89 -0.1
4,160,653 - Psyr_3491 0.89 -2.9
4,160,721 + -2.1
4,160,721 + +2.8
4,160,721 + -1.0
4,160,721 + +3.3
4,160,721 + -0.2
4,160,721 + -1.2
4,160,722 - +1.4
4,160,769 + -0.7
4,160,769 + -1.5
4,160,898 - -0.2
4,160,943 + -0.5
4,160,944 - +1.1
4,160,944 - -0.6
4,161,022 + Psyr_3492 0.12 +2.1
4,161,023 - Psyr_3492 0.12 +2.1
4,161,023 - Psyr_3492 0.12 -2.5
4,161,138 + Psyr_3492 0.21 +1.0
4,161,209 + Psyr_3492 0.26 +3.0
4,161,209 + Psyr_3492 0.26 +1.0
4,161,210 - Psyr_3492 0.26 -1.7
4,161,262 - Psyr_3492 0.30 -0.9
4,161,392 + Psyr_3492 0.40 +2.1
4,161,392 + Psyr_3492 0.40 +1.4
4,161,392 + Psyr_3492 0.40 -2.8
4,161,393 - Psyr_3492 0.40 +4.0
4,161,393 - Psyr_3492 0.40 +1.4
4,161,393 - Psyr_3492 0.40 +1.8
4,161,393 - Psyr_3492 0.40 +4.5
4,161,651 + Psyr_3492 0.59 -3.6
4,161,651 + Psyr_3492 0.59 -0.8
4,161,651 + Psyr_3492 0.59 +3.3
4,161,651 + Psyr_3492 0.59 -1.3
4,161,651 + Psyr_3492 0.59 +0.3
4,161,651 + Psyr_3492 0.59 +2.8
4,161,651 + Psyr_3492 0.59 -1.5
4,161,651 + Psyr_3492 0.59 +2.8
4,161,652 - Psyr_3492 0.59 -1.5
4,161,652 - Psyr_3492 0.59 +3.3
4,161,652 - Psyr_3492 0.59 +1.4
4,161,652 - Psyr_3492 0.59 -2.1
4,161,652 - Psyr_3492 0.59 +0.5
4,161,652 - Psyr_3492 0.59 -0.2
4,161,652 - Psyr_3492 0.59 -1.5
4,161,652 - Psyr_3492 0.59 -0.1
4,161,835 - Psyr_3492 0.73 -0.5
4,162,003 - Psyr_3492 0.85 -3.0
4,162,101 - -0.6
4,162,137 - -0.6
4,162,215 + -1.0
4,162,215 + +1.4
4,162,215 + -1.9
4,162,215 + +3.0
4,162,216 - +3.4
4,162,491 + Psyr_3493 0.21 -4.0
4,162,491 + Psyr_3493 0.21 -1.5
4,162,492 - Psyr_3493 0.21 +3.3
4,162,492 - Psyr_3493 0.21 -0.9
4,162,492 - Psyr_3493 0.21 -0.7
4,162,492 - Psyr_3493 0.21 -0.1
4,162,492 - Psyr_3493 0.21 +2.1
4,162,492 - Psyr_3493 0.21 -1.7
4,162,666 + Psyr_3493 0.40 +0.6
4,162,666 + Psyr_3493 0.40 -4.1
4,162,667 - Psyr_3493 0.40 -0.5
4,162,696 + Psyr_3493 0.43 +1.1
4,162,696 + Psyr_3493 0.43 -2.9
4,162,696 + Psyr_3493 0.43 -2.6
4,162,696 + Psyr_3493 0.43 +3.5
4,162,696 + Psyr_3493 0.43 +0.4
4,162,697 - Psyr_3493 0.43 +0.3
4,162,697 - Psyr_3493 0.43 -3.4
4,162,697 - Psyr_3493 0.43 +1.4
4,162,697 - Psyr_3493 0.43 +3.0
4,162,697 - Psyr_3493 0.43 -0.4
4,162,697 - Psyr_3493 0.43 -1.5
4,162,878 + Psyr_3493 0.63 +3.4
4,162,966 + Psyr_3493 0.73 -2.7
4,162,966 + Psyr_3493 0.73 -1.5
4,162,967 - Psyr_3493 0.73 +1.4
4,163,062 + Psyr_3493 0.83 +2.6
4,163,062 + Psyr_3493 0.83 -1.4
4,163,062 + Psyr_3493 0.83 -0.2
4,163,062 + Psyr_3493 0.83 -1.0
4,163,062 + Psyr_3493 0.83 +2.4
4,163,062 + Psyr_3493 0.83 -4.2
4,163,063 - Psyr_3493 0.83 +2.6
4,163,063 - Psyr_3493 0.83 +0.0
4,163,063 - Psyr_3493 0.83 -2.9
4,163,063 - Psyr_3493 0.83 +0.8
4,163,071 + Psyr_3493 0.84 +0.6
4,163,071 + Psyr_3493 0.84 +2.1
4,163,072 - Psyr_3493 0.84 +2.1
4,163,072 - Psyr_3493 0.84 -2.1
4,163,175 + +1.4
4,163,175 + +0.8
4,163,176 - +2.8
4,163,176 - -2.2
4,163,195 - +1.8
4,163,201 + -3.0

Or see this region's nucleotide sequence