Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3490

Experiment: KB with Acridine orange 62.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3488 and Psyr_3489 are separated by 49 nucleotidesPsyr_3489 and Psyr_3490 are separated by 82 nucleotidesPsyr_3490 and Psyr_3491 are separated by 62 nucleotides Psyr_3488: Psyr_3488 - anti-sigma-28 factor, FlgM, at 4,157,659 to 4,157,973 _3488 Psyr_3489: Psyr_3489 - FlgN, at 4,158,023 to 4,158,490 _3489 Psyr_3490: Psyr_3490 - conserved hypothetical protein, at 4,158,573 to 4,159,319 _3490 Psyr_3491: Psyr_3491 - Major facilitator superfamily, at 4,159,382 to 4,160,803 _3491 Position (kb) 4158 4159 4160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4157.971 kb on + strandat 4157.972 kb on - strandat 4158.034 kb on + strandat 4158.034 kb on + strandat 4158.035 kb on - strandat 4158.035 kb on - strandat 4158.035 kb on - strandat 4158.203 kb on - strand, within Psyr_3489at 4158.276 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.424 kb on + strand, within Psyr_3489at 4158.425 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.432 kb on - strand, within Psyr_3489at 4158.457 kb on + strandat 4158.489 kb on - strandat 4158.499 kb on - strandat 4158.547 kb on - strandat 4158.549 kb on + strandat 4158.549 kb on + strandat 4158.623 kb on + strandat 4158.623 kb on + strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.624 kb on - strandat 4158.686 kb on + strand, within Psyr_3490at 4158.687 kb on - strand, within Psyr_3490at 4158.687 kb on - strand, within Psyr_3490at 4158.720 kb on + strand, within Psyr_3490at 4158.720 kb on + strand, within Psyr_3490at 4158.721 kb on - strand, within Psyr_3490at 4158.721 kb on - strand, within Psyr_3490at 4158.860 kb on + strand, within Psyr_3490at 4158.861 kb on - strand, within Psyr_3490at 4158.861 kb on - strand, within Psyr_3490at 4158.903 kb on + strand, within Psyr_3490at 4158.904 kb on - strand, within Psyr_3490at 4158.904 kb on - strand, within Psyr_3490at 4158.934 kb on - strand, within Psyr_3490at 4159.044 kb on - strand, within Psyr_3490at 4159.111 kb on + strand, within Psyr_3490at 4159.111 kb on + strand, within Psyr_3490at 4159.113 kb on + strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.114 kb on - strand, within Psyr_3490at 4159.269 kb on + strandat 4159.276 kb on + strandat 4159.276 kb on + strandat 4159.277 kb on - strandat 4159.377 kb on - strandat 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.618 kb on + strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.619 kb on - strand, within Psyr_3491at 4159.734 kb on + strand, within Psyr_3491at 4159.734 kb on + strand, within Psyr_3491at 4159.735 kb on - strand, within Psyr_3491at 4159.806 kb on + strand, within Psyr_3491at 4159.806 kb on + strand, within Psyr_3491at 4159.807 kb on - strand, within Psyr_3491at 4159.807 kb on - strand, within Psyr_3491at 4159.807 kb on - strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.002 kb on + strand, within Psyr_3491at 4160.003 kb on - strand, within Psyr_3491at 4160.003 kb on - strand, within Psyr_3491at 4160.134 kb on - strand, within Psyr_3491at 4160.183 kb on + strand, within Psyr_3491

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 62.5 ug/ml
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4,157,971 + +1.2
4,157,972 - -0.2
4,158,034 + +1.4
4,158,034 + +3.1
4,158,035 - -2.6
4,158,035 - +2.6
4,158,035 - -0.2
4,158,203 - Psyr_3489 0.38 -0.5
4,158,276 + Psyr_3489 0.54 +2.8
4,158,424 + Psyr_3489 0.86 +1.8
4,158,424 + Psyr_3489 0.86 +1.4
4,158,424 + Psyr_3489 0.86 -0.8
4,158,424 + Psyr_3489 0.86 +2.6
4,158,425 - Psyr_3489 0.86 +3.0
4,158,432 - Psyr_3489 0.87 -1.3
4,158,432 - Psyr_3489 0.87 +3.0
4,158,432 - Psyr_3489 0.87 +4.3
4,158,457 + -0.2
4,158,489 - -1.3
4,158,499 - +0.0
4,158,547 - -0.5
4,158,549 + -2.7
4,158,549 + -0.2
4,158,623 + +1.8
4,158,623 + -0.2
4,158,624 - -1.2
4,158,624 - +2.1
4,158,624 - +1.4
4,158,624 - +0.2
4,158,624 - -3.5
4,158,686 + Psyr_3490 0.15 +1.8
4,158,687 - Psyr_3490 0.15 +3.3
4,158,687 - Psyr_3490 0.15 -1.6
4,158,720 + Psyr_3490 0.20 +0.8
4,158,720 + Psyr_3490 0.20 +2.6
4,158,721 - Psyr_3490 0.20 +3.3
4,158,721 - Psyr_3490 0.20 -2.1
4,158,860 + Psyr_3490 0.38 +3.0
4,158,861 - Psyr_3490 0.39 -1.1
4,158,861 - Psyr_3490 0.39 -0.2
4,158,903 + Psyr_3490 0.44 -0.7
4,158,904 - Psyr_3490 0.44 -1.8
4,158,904 - Psyr_3490 0.44 +0.8
4,158,934 - Psyr_3490 0.48 -2.9
4,159,044 - Psyr_3490 0.63 +3.5
4,159,111 + Psyr_3490 0.72 +3.5
4,159,111 + Psyr_3490 0.72 +0.4
4,159,113 + Psyr_3490 0.72 -0.2
4,159,114 - Psyr_3490 0.72 -1.9
4,159,114 - Psyr_3490 0.72 +3.6
4,159,114 - Psyr_3490 0.72 -2.2
4,159,114 - Psyr_3490 0.72 -2.6
4,159,114 - Psyr_3490 0.72 -2.2
4,159,269 + +4.5
4,159,276 + -0.4
4,159,276 + -1.2
4,159,277 - +3.8
4,159,377 - +0.8
4,159,618 + Psyr_3491 0.17 -3.0
4,159,618 + Psyr_3491 0.17 -0.9
4,159,618 + Psyr_3491 0.17 -0.8
4,159,618 + Psyr_3491 0.17 -1.3
4,159,618 + Psyr_3491 0.17 -0.8
4,159,618 + Psyr_3491 0.17 +3.1
4,159,618 + Psyr_3491 0.17 -1.1
4,159,618 + Psyr_3491 0.17 +0.8
4,159,619 - Psyr_3491 0.17 +0.8
4,159,619 - Psyr_3491 0.17 -0.3
4,159,619 - Psyr_3491 0.17 +2.8
4,159,619 - Psyr_3491 0.17 +2.1
4,159,619 - Psyr_3491 0.17 +2.8
4,159,619 - Psyr_3491 0.17 -1.7
4,159,734 + Psyr_3491 0.25 -2.4
4,159,734 + Psyr_3491 0.25 -1.0
4,159,735 - Psyr_3491 0.25 -1.3
4,159,806 + Psyr_3491 0.30 +0.3
4,159,806 + Psyr_3491 0.30 +1.7
4,159,807 - Psyr_3491 0.30 -1.3
4,159,807 - Psyr_3491 0.30 -0.2
4,159,807 - Psyr_3491 0.30 +0.8
4,160,002 + Psyr_3491 0.44 -0.2
4,160,002 + Psyr_3491 0.44 +3.3
4,160,002 + Psyr_3491 0.44 -2.3
4,160,003 - Psyr_3491 0.44 -2.5
4,160,003 - Psyr_3491 0.44 -1.2
4,160,134 - Psyr_3491 0.53 -2.2
4,160,183 + Psyr_3491 0.56 -0.2

Or see this region's nucleotide sequence