Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3410

Experiment: KB with Acridine orange 62.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 62.5 ug/ml
4,072,399	+		Psyr_3409	0.48	+3.2
4,072,412	+		Psyr_3409	0.49	-0.1
4,072,413	-		Psyr_3409	0.49	-0.0
4,072,413	-		Psyr_3409	0.49	+2.1
4,072,509	+		Psyr_3409	0.54	-1.5
4,072,510	-		Psyr_3409	0.54	-0.7
4,072,620	-		Psyr_3409	0.60	+2.9
4,072,756	+		Psyr_3409	0.68	-0.4
4,072,756	+		Psyr_3409	0.68	-0.9
4,072,756	+		Psyr_3409	0.68	+2.9
4,072,771	-		Psyr_3409	0.68	+1.4
4,072,832	+		Psyr_3409	0.72	-1.7
4,072,832	+		Psyr_3409	0.72	+2.4
4,072,833	-		Psyr_3409	0.72	-1.1
4,072,873	-		Psyr_3409	0.74	-0.9
4,072,875	+		Psyr_3409	0.74	-3.4
4,072,875	+		Psyr_3409	0.74	+0.4
4,072,876	-		Psyr_3409	0.74	+2.8
4,072,992	-		Psyr_3409	0.80	+2.6
4,073,065	-		Psyr_3409	0.84	-0.6
4,073,068	+		Psyr_3409	0.85	-1.6
4,073,068	+		Psyr_3409	0.85	-1.9
4,073,068	+		Psyr_3409	0.85	-2.0
4,073,069	-		Psyr_3409	0.85	-2.0
4,073,069	-		Psyr_3409	0.85	-1.5
4,073,069	-		Psyr_3409	0.85	-2.1
4,073,103	+		Psyr_3409	0.87	+2.0
4,073,103	+		Psyr_3409	0.87	-0.9
4,073,104	-		Psyr_3409	0.87	+2.6
4,073,104	-		Psyr_3409	0.87	+2.1
4,073,104	-		Psyr_3409	0.87	+1.1
4,073,104	-		Psyr_3409	0.87	+0.8
4,073,112	+		Psyr_3409	0.87	-0.2
4,073,113	-		Psyr_3409	0.87	-0.5
4,073,202	-				-1.2
4,073,222	-				+0.4
4,073,276	+				-1.0
4,073,370	+				-0.9
4,073,371	-				+2.6
4,073,450	+				+1.4
4,073,451	-				+2.1
4,073,451	-				+2.1
4,073,451	-				+3.9
4,073,451	-				-0.1
4,073,452	+				-1.0
4,073,481	+				-3.5
4,073,481	+				+1.4
4,073,481	+				-0.2
4,073,508	+				-0.2
4,073,509	-				-0.2
4,073,521	+				-0.2
4,073,522	-				-1.7
4,073,578	+				-0.8
4,073,588	+				+2.4
4,073,588	+				+2.1
4,073,588	+				+2.6
4,073,588	+				-4.5
4,073,589	-				-1.5
4,073,589	-				-4.0
4,073,589	-				+4.0
4,073,589	-				+2.6
4,073,636	+				+1.8
4,073,636	+				+3.9
4,073,636	+				-2.6
4,073,636	+				-1.3
4,073,637	-				+3.2
4,073,637	-				-0.5
4,073,637	-				+2.4
4,073,669	-		Psyr_3410	0.10	+2.4
4,073,681	+		Psyr_3410	0.11	-0.9
4,073,681	+		Psyr_3410	0.11	+2.9
4,073,681	+		Psyr_3410	0.11	-3.1
4,073,681	+		Psyr_3410	0.11	+3.5
4,073,681	+		Psyr_3410	0.11	-2.8
4,073,681	+		Psyr_3410	0.11	-3.3
4,073,681	+		Psyr_3410	0.11	+1.4
4,073,682	-		Psyr_3410	0.11	+2.1
4,073,682	-		Psyr_3410	0.11	-1.3
4,073,682	-		Psyr_3410	0.11	+3.2
4,073,682	-		Psyr_3410	0.11	-2.9
4,073,682	-		Psyr_3410	0.11	+1.4
4,073,682	-		Psyr_3410	0.11	-0.9
4,073,682	-		Psyr_3410	0.11	-2.0
4,073,687	+		Psyr_3410	0.11	-0.2
4,073,688	-		Psyr_3410	0.11	+3.1
4,073,688	-		Psyr_3410	0.11	+0.9
4,073,689	+		Psyr_3410	0.11	+0.1
4,073,689	+		Psyr_3410	0.11	-2.1
4,073,689	+		Psyr_3410	0.11	+1.8
4,073,690	-		Psyr_3410	0.11	+4.5
4,073,690	-		Psyr_3410	0.11	-1.2
4,073,690	-		Psyr_3410	0.11	-1.2
4,073,736	+		Psyr_3410	0.13	+2.6
4,073,737	-		Psyr_3410	0.13	-0.2
4,073,912	+		Psyr_3410	0.19	+2.4
4,073,912	+		Psyr_3410	0.19	-1.5
4,073,912	+		Psyr_3410	0.19	-0.2
4,073,913	-		Psyr_3410	0.20	-2.7
4,073,913	-		Psyr_3410	0.20	+3.7
4,073,913	-		Psyr_3410	0.20	+0.8
4,073,913	-		Psyr_3410	0.20	-1.5
4,073,966	-		Psyr_3410	0.22	+0.1
4,073,998	+		Psyr_3410	0.23	-0.2
4,073,999	-		Psyr_3410	0.23	+2.8
4,074,025	+		Psyr_3410	0.24	-0.2
4,074,026	-		Psyr_3410	0.24	+1.2
4,074,061	+		Psyr_3410	0.25	+0.4
4,074,061	+		Psyr_3410	0.25	-1.7
4,074,062	-		Psyr_3410	0.25	-1.4
4,074,089	+		Psyr_3410	0.26	-0.9
4,074,089	+		Psyr_3410	0.26	-1.2
4,074,089	+		Psyr_3410	0.26	+1.3
4,074,089	+		Psyr_3410	0.26	-1.7
4,074,089	+		Psyr_3410	0.26	-3.1
4,074,090	-		Psyr_3410	0.26	+3.1
4,074,237	+		Psyr_3410	0.32	-1.9
4,074,237	+		Psyr_3410	0.32	+2.4
4,074,237	+		Psyr_3410	0.32	+2.9
4,074,256	+		Psyr_3410	0.33	-0.2
4,074,257	-		Psyr_3410	0.33	+3.9
4,074,312	+		Psyr_3410	0.35	-2.0
4,074,312	+		Psyr_3410	0.35	+0.6
4,074,312	+		Psyr_3410	0.35	-1.4
4,074,313	-		Psyr_3410	0.35	+3.5
4,074,389	+		Psyr_3410	0.38	-0.1
4,074,389	+		Psyr_3410	0.38	-0.8
4,074,390	-		Psyr_3410	0.38	-2.1
4,074,390	-		Psyr_3410	0.38	+3.2
4,074,390	-		Psyr_3410	0.38	-1.3
4,074,390	-		Psyr_3410	0.38	-0.6
4,074,548	+		Psyr_3410	0.44	-1.8
4,074,548	+		Psyr_3410	0.44	+1.4
4,074,549	-		Psyr_3410	0.44	-3.6
4,074,549	-		Psyr_3410	0.44	+1.8
4,074,551	+		Psyr_3410	0.44	+0.6
4,074,551	+		Psyr_3410	0.44	+3.5
4,074,551	+		Psyr_3410	0.44	+0.8
4,074,551	+		Psyr_3410	0.44	+3.9
4,074,551	+		Psyr_3410	0.44	-2.3
4,074,551	+		Psyr_3410	0.44	+0.5
4,074,551	+		Psyr_3410	0.44	-1.5
4,074,551	+		Psyr_3410	0.44	-1.2
4,074,551	+		Psyr_3410	0.44	-1.8
4,074,551	+		Psyr_3410	0.44	+2.6
4,074,551	+		Psyr_3410	0.44	+2.4
4,074,552	-		Psyr_3410	0.44	+1.4
4,074,552	-		Psyr_3410	0.44	+0.2
4,074,552	-		Psyr_3410	0.44	+0.8
4,074,552	-		Psyr_3410	0.44	-1.2
4,074,552	-		Psyr_3410	0.44	-0.4
4,074,552	-		Psyr_3410	0.44	-1.8
4,074,557	-		Psyr_3410	0.44	-2.1
4,074,674	+		Psyr_3410	0.48	+2.6
4,074,728	+		Psyr_3410	0.50	+2.9
4,074,731	+		Psyr_3410	0.51	+2.1
4,074,731	+		Psyr_3410	0.51	+2.9
4,074,731	+		Psyr_3410	0.51	-1.4
4,074,732	-		Psyr_3410	0.51	-2.0
4,074,732	-		Psyr_3410	0.51	-3.7
4,074,732	-				-0.2
4,074,739	-		Psyr_3410	0.51	-1.6
4,074,777	+		Psyr_3410	0.52	+3.6
4,074,777	+		Psyr_3410	0.52	-2.6
4,074,777	+		Psyr_3410	0.52	+4.3
4,074,778	-		Psyr_3410	0.52	-1.0
4,074,778	-		Psyr_3410	0.52	+1.4
4,074,778	-		Psyr_3410	0.52	-2.1
4,074,778	-		Psyr_3410	0.52	-4.0
4,074,870	+		Psyr_3410	0.56	-0.0
4,074,870	+		Psyr_3410	0.56	+1.8
4,074,870	+		Psyr_3410	0.56	-0.3
4,074,870	+		Psyr_3410	0.56	-1.5
4,074,871	-		Psyr_3410	0.56	-2.0
4,074,871	-		Psyr_3410	0.56	-2.0
4,074,871	-		Psyr_3410	0.56	+0.8
4,074,871	-		Psyr_3410	0.56	+2.1
4,074,871	-		Psyr_3410	0.56	-0.2
4,074,871	-		Psyr_3410	0.56	-2.5
4,074,968	+		Psyr_3410	0.60	+0.4
4,074,968	+		Psyr_3410	0.60	-0.4
4,074,968	+		Psyr_3410	0.60	-0.7
4,074,968	+		Psyr_3410	0.60	-0.4
4,074,969	-		Psyr_3410	0.60	-3.0
4,074,969	-		Psyr_3410	0.60	+2.4
4,074,969	-		Psyr_3410	0.60	+3.8
4,074,969	-		Psyr_3410	0.60	-2.5
4,074,969	-		Psyr_3410	0.60	-1.4
4,074,977	+		Psyr_3410	0.60	+2.6
4,074,977	+		Psyr_3410	0.60	+1.4
4,074,977	+		Psyr_3410	0.60	-1.1
4,074,977	+		Psyr_3410	0.60	+1.8
4,074,977	+		Psyr_3410	0.60	+2.6
4,074,977	+		Psyr_3410	0.60	-3.5
4,074,977	+		Psyr_3410	0.60	+3.7
4,074,977	+		Psyr_3410	0.60	+1.4
4,074,977	+		Psyr_3410	0.60	+3.6
4,074,977	+		Psyr_3410	0.60	+2.8
4,074,978	-		Psyr_3410	0.60	+0.8
4,074,978	-		Psyr_3410	0.60	-2.2
4,074,978	-		Psyr_3410	0.60	-1.5
4,074,978	-		Psyr_3410	0.60	-1.2
4,074,978	-		Psyr_3410	0.60	-2.2
4,074,978	-		Psyr_3410	0.60	-0.7
4,074,978	-		Psyr_3410	0.60	+0.3
4,074,978	-		Psyr_3410	0.60	-1.6
4,074,978	-		Psyr_3410	0.60	-2.1
4,074,978	-		Psyr_3410	0.60	-0.2
4,074,978	-		Psyr_3410	0.60	-0.6
4,074,978	-		Psyr_3410	0.60	-0.9
4,074,978	-		Psyr_3410	0.60	-3.3
4,074,978	-		Psyr_3410	0.60	-2.5
4,074,978	-		Psyr_3410	0.60	-3.7
4,074,978	-		Psyr_3410	0.60	+1.4
4,074,978	-		Psyr_3410	0.60	-4.4
4,074,991	+		Psyr_3410	0.60	-1.5
4,075,017	+		Psyr_3410	0.61	-2.7
4,075,037	+		Psyr_3410	0.62	+3.4
4,075,038	-		Psyr_3410	0.62	-1.6
4,075,053	+		Psyr_3410	0.63	+1.8
4,075,054	-		Psyr_3410	0.63	-0.4
4,075,065	+		Psyr_3410	0.63	-1.0
4,075,077	-		Psyr_3410	0.64	-1.7
4,075,077	-		Psyr_3410	0.64	-1.2
4,075,077	-		Psyr_3410	0.64	+3.7
4,075,126	+		Psyr_3410	0.66	-1.5
4,075,126	+		Psyr_3410	0.66	+1.4
4,075,126	+		Psyr_3410	0.66	-2.8
4,075,127	-		Psyr_3410	0.66	-1.4
4,075,127	-		Psyr_3410	0.66	-3.4
4,075,129	+		Psyr_3410	0.66	+1.0
4,075,171	-		Psyr_3410	0.67	+2.4
4,075,353	+		Psyr_3410	0.74	+4.6
4,075,353	+		Psyr_3410	0.74	-1.3
4,075,354	-		Psyr_3410	0.74	-1.2
4,075,409	+		Psyr_3410	0.76	+3.1
4,075,409	+		Psyr_3410	0.76	-0.2
4,075,409	+		Psyr_3410	0.76	+0.2
4,075,410	-		Psyr_3410	0.76	+1.8
4,075,410	-		Psyr_3410	0.76	+4.2
4,075,410	-		Psyr_3410	0.76	-0.0
4,075,529	+		Psyr_3410	0.81	+4.0
4,075,529	+		Psyr_3410	0.81	-1.9
4,075,529	+		Psyr_3410	0.81	+3.7
4,075,530	-		Psyr_3410	0.81	-2.4
4,075,530	-		Psyr_3410	0.81	-1.6
4,075,530	-		Psyr_3410	0.81	+0.4
4,075,617	-		Psyr_3410	0.84	+2.1
4,075,622	+		Psyr_3410	0.84	+3.6
4,075,622	+		Psyr_3410	0.84	+0.1
4,075,623	-		Psyr_3410	0.84	+2.1
4,075,623	-		Psyr_3410	0.84	-0.9
4,075,702	+		Psyr_3410	0.87	+3.9
4,075,703	-		Psyr_3410	0.87	-0.2
4,075,703	-		Psyr_3410	0.87	-1.4
4,075,703	-		Psyr_3410	0.87	-0.9
4,075,737	-		Psyr_3410	0.89	+1.1
4,075,872	-				+3.4
4,075,872	-				+2.6
4,075,904	+				+2.1
4,075,904	+				+2.9
4,075,904	+				-0.4
4,075,904	+				-0.4
4,075,905	-				-0.1
4,075,905	-				+2.9
4,075,952	+				-1.3
4,075,952	+				-1.0
4,075,953	-				-0.2
4,075,955	+				-3.5
4,075,955	+				-0.7
4,075,956	-				+2.6
4,075,956	-				-0.0
4,075,956	-				+2.9
4,075,956	-				-2.4
4,076,083	+				-1.5
4,076,083	+				-2.1
4,076,405	+		Psyr_3411	0.61	-1.0
4,076,405	+		Psyr_3411	0.61	+2.4
4,076,405	+		Psyr_3411	0.61	+3.6
4,076,406	-		Psyr_3411	0.61	+2.6
4,076,406	-		Psyr_3411	0.61	-1.8
4,076,406	-		Psyr_3411	0.61	+1.4
4,076,406	-		Psyr_3411	0.61	+0.8
4,076,514	+		Psyr_3411	0.85	-3.0
4,076,514	+		Psyr_3411	0.85	-0.7
4,076,515	-		Psyr_3411	0.85	+1.8
4,076,527	+		Psyr_3411	0.87	+1.8
4,076,527	+		Psyr_3411	0.87	+0.4
4,076,528	-		Psyr_3411	0.88	+2.9
4,076,528	-		Psyr_3411	0.88	+0.8
4,076,528	-		Psyr_3411	0.88	-1.4
4,076,573	+				-1.3
4,076,574	-				+0.8
4,076,574	-				+1.4
4,076,574	-				+2.1
4,076,726	-		Psyr_3412	0.18	+3.5
4,076,726	-		Psyr_3412	0.18	+0.8
4,076,842	+		Psyr_3412	0.32	-0.2
4,076,843	-		Psyr_3412	0.33	-2.7